Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04313

Experiment: M9 plate, Mixed culture; Bacillus zanthoxyli TBS_056 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_04312 and MPMX20_04313 are separated by 17 nucleotidesMPMX20_04313 and MPMX20_04314 overlap by 4 nucleotides MPMX20_04312: MPMX20_04312 - Glucose-1-phosphate adenylyltransferase, at 4,503,876 to 4,505,171 _04312 MPMX20_04313: MPMX20_04313 - Glycogen debranching enzyme, at 4,505,189 to 4,507,162 _04313 MPMX20_04314: MPMX20_04314 - 1,4-alpha-glucan branching enzyme GlgB, at 4,507,159 to 4,509,345 _04314 Position (kb) 4505 4506 4507 4508Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 4504.217 kb on - strand, within MPMX20_04312at 4504.273 kb on + strand, within MPMX20_04312at 4504.303 kb on + strand, within MPMX20_04312at 4504.317 kb on - strand, within MPMX20_04312at 4504.327 kb on + strand, within MPMX20_04312at 4504.379 kb on + strand, within MPMX20_04312at 4504.382 kb on - strand, within MPMX20_04312at 4504.386 kb on + strand, within MPMX20_04312at 4504.394 kb on + strand, within MPMX20_04312at 4504.394 kb on - strand, within MPMX20_04312at 4504.403 kb on - strand, within MPMX20_04312at 4504.486 kb on + strand, within MPMX20_04312at 4504.486 kb on + strand, within MPMX20_04312at 4504.494 kb on - strand, within MPMX20_04312at 4504.715 kb on + strand, within MPMX20_04312at 4504.726 kb on - strand, within MPMX20_04312at 4504.927 kb on - strand, within MPMX20_04312at 4504.928 kb on + strand, within MPMX20_04312at 4504.942 kb on + strand, within MPMX20_04312at 4504.986 kb on - strand, within MPMX20_04312at 4504.990 kb on + strand, within MPMX20_04312at 4504.992 kb on + strand, within MPMX20_04312at 4505.047 kb on - strandat 4505.156 kb on + strandat 4505.449 kb on + strand, within MPMX20_04313at 4505.449 kb on + strand, within MPMX20_04313at 4505.498 kb on + strand, within MPMX20_04313at 4505.501 kb on - strand, within MPMX20_04313at 4505.508 kb on + strand, within MPMX20_04313at 4505.508 kb on + strand, within MPMX20_04313at 4505.516 kb on - strand, within MPMX20_04313at 4505.539 kb on - strand, within MPMX20_04313at 4505.550 kb on + strand, within MPMX20_04313at 4505.599 kb on - strand, within MPMX20_04313at 4505.627 kb on - strand, within MPMX20_04313at 4505.642 kb on - strand, within MPMX20_04313at 4505.666 kb on - strand, within MPMX20_04313at 4505.668 kb on + strand, within MPMX20_04313at 4505.701 kb on + strand, within MPMX20_04313at 4505.701 kb on + strand, within MPMX20_04313at 4505.709 kb on - strand, within MPMX20_04313at 4505.709 kb on - strand, within MPMX20_04313at 4505.709 kb on - strand, within MPMX20_04313at 4505.709 kb on - strand, within MPMX20_04313at 4505.722 kb on - strand, within MPMX20_04313at 4505.722 kb on - strand, within MPMX20_04313at 4505.824 kb on - strand, within MPMX20_04313at 4506.062 kb on - strand, within MPMX20_04313at 4506.074 kb on - strand, within MPMX20_04313at 4506.145 kb on - strand, within MPMX20_04313at 4506.197 kb on - strand, within MPMX20_04313at 4506.197 kb on - strand, within MPMX20_04313at 4506.239 kb on - strand, within MPMX20_04313at 4506.334 kb on + strand, within MPMX20_04313at 4506.449 kb on + strand, within MPMX20_04313at 4506.449 kb on + strand, within MPMX20_04313at 4506.454 kb on + strand, within MPMX20_04313at 4506.470 kb on - strand, within MPMX20_04313at 4506.504 kb on + strand, within MPMX20_04313at 4506.563 kb on + strand, within MPMX20_04313at 4506.585 kb on + strand, within MPMX20_04313at 4506.603 kb on - strand, within MPMX20_04313at 4506.630 kb on + strand, within MPMX20_04313at 4506.631 kb on + strand, within MPMX20_04313at 4506.631 kb on + strand, within MPMX20_04313at 4506.639 kb on - strand, within MPMX20_04313at 4506.677 kb on + strand, within MPMX20_04313at 4506.716 kb on + strand, within MPMX20_04313at 4506.724 kb on - strand, within MPMX20_04313at 4506.733 kb on + strand, within MPMX20_04313at 4506.741 kb on - strand, within MPMX20_04313at 4506.798 kb on - strand, within MPMX20_04313at 4506.816 kb on - strand, within MPMX20_04313at 4506.901 kb on + strand, within MPMX20_04313at 4506.901 kb on + strand, within MPMX20_04313at 4506.909 kb on - strand, within MPMX20_04313at 4507.032 kb on + strandat 4507.038 kb on - strandat 4507.040 kb on - strandat 4507.066 kb on - strandat 4507.068 kb on - strandat 4507.079 kb on + strandat 4507.130 kb on - strandat 4507.146 kb on + strandat 4507.146 kb on + strandat 4507.187 kb on - strandat 4507.203 kb on + strandat 4507.258 kb on - strandat 4507.272 kb on - strandat 4507.330 kb on + strandat 4507.343 kb on - strandat 4507.370 kb on + strandat 4507.378 kb on - strand, within MPMX20_04314at 4507.406 kb on + strand, within MPMX20_04314at 4507.413 kb on - strand, within MPMX20_04314at 4507.451 kb on + strand, within MPMX20_04314at 4507.455 kb on + strand, within MPMX20_04314at 4507.502 kb on + strand, within MPMX20_04314at 4507.502 kb on + strand, within MPMX20_04314at 4507.538 kb on + strand, within MPMX20_04314at 4507.553 kb on - strand, within MPMX20_04314at 4507.571 kb on + strand, within MPMX20_04314at 4507.603 kb on - strand, within MPMX20_04314at 4507.812 kb on - strand, within MPMX20_04314at 4507.812 kb on - strand, within MPMX20_04314at 4507.815 kb on + strand, within MPMX20_04314at 4507.823 kb on - strand, within MPMX20_04314at 4507.823 kb on - strand, within MPMX20_04314at 4507.823 kb on - strand, within MPMX20_04314at 4507.835 kb on + strand, within MPMX20_04314at 4507.889 kb on + strand, within MPMX20_04314at 4507.907 kb on - strand, within MPMX20_04314at 4507.948 kb on - strand, within MPMX20_04314at 4507.958 kb on - strand, within MPMX20_04314at 4507.991 kb on + strand, within MPMX20_04314at 4508.018 kb on - strand, within MPMX20_04314at 4508.021 kb on + strand, within MPMX20_04314at 4508.142 kb on + strand, within MPMX20_04314at 4508.150 kb on - strand, within MPMX20_04314at 4508.160 kb on + strand, within MPMX20_04314

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 plate, Mixed culture; Bacillus zanthoxyli TBS_056 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
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4,504,217 - MPMX20_04312 0.26 -1.1
4,504,273 + MPMX20_04312 0.31 +1.1
4,504,303 + MPMX20_04312 0.33 +0.6
4,504,317 - MPMX20_04312 0.34 -2.5
4,504,327 + MPMX20_04312 0.35 -0.8
4,504,379 + MPMX20_04312 0.39 -1.5
4,504,382 - MPMX20_04312 0.39 +2.0
4,504,386 + MPMX20_04312 0.39 +0.6
4,504,394 + MPMX20_04312 0.40 -0.2
4,504,394 - MPMX20_04312 0.40 +3.1
4,504,403 - MPMX20_04312 0.41 +3.0
4,504,486 + MPMX20_04312 0.47 +0.1
4,504,486 + MPMX20_04312 0.47 +1.4
4,504,494 - MPMX20_04312 0.48 +0.7
4,504,715 + MPMX20_04312 0.65 +1.0
4,504,726 - MPMX20_04312 0.66 -2.2
4,504,927 - MPMX20_04312 0.81 -1.2
4,504,928 + MPMX20_04312 0.81 +3.0
4,504,942 + MPMX20_04312 0.82 +4.9
4,504,986 - MPMX20_04312 0.86 +0.2
4,504,990 + MPMX20_04312 0.86 +0.5
4,504,992 + MPMX20_04312 0.86 +1.6
4,505,047 - -0.3
4,505,156 + +1.4
4,505,449 + MPMX20_04313 0.13 +0.6
4,505,449 + MPMX20_04313 0.13 +0.1
4,505,498 + MPMX20_04313 0.16 -0.4
4,505,501 - MPMX20_04313 0.16 +1.2
4,505,508 + MPMX20_04313 0.16 -0.1
4,505,508 + MPMX20_04313 0.16 -2.0
4,505,516 - MPMX20_04313 0.17 +0.5
4,505,539 - MPMX20_04313 0.18 +0.2
4,505,550 + MPMX20_04313 0.18 +0.9
4,505,599 - MPMX20_04313 0.21 -1.6
4,505,627 - MPMX20_04313 0.22 -1.2
4,505,642 - MPMX20_04313 0.23 +0.6
4,505,666 - MPMX20_04313 0.24 +0.6
4,505,668 + MPMX20_04313 0.24 +1.6
4,505,701 + MPMX20_04313 0.26 +0.2
4,505,701 + MPMX20_04313 0.26 -0.7
4,505,709 - MPMX20_04313 0.26 +0.3
4,505,709 - MPMX20_04313 0.26 +3.0
4,505,709 - MPMX20_04313 0.26 -0.9
4,505,709 - MPMX20_04313 0.26 +1.4
4,505,722 - MPMX20_04313 0.27 +2.0
4,505,722 - MPMX20_04313 0.27 -0.9
4,505,824 - MPMX20_04313 0.32 -0.5
4,506,062 - MPMX20_04313 0.44 +1.0
4,506,074 - MPMX20_04313 0.45 +3.6
4,506,145 - MPMX20_04313 0.48 -1.3
4,506,197 - MPMX20_04313 0.51 +3.0
4,506,197 - MPMX20_04313 0.51 -0.5
4,506,239 - MPMX20_04313 0.53 -0.8
4,506,334 + MPMX20_04313 0.58 +0.1
4,506,449 + MPMX20_04313 0.64 -0.2
4,506,449 + MPMX20_04313 0.64 -0.4
4,506,454 + MPMX20_04313 0.64 +0.9
4,506,470 - MPMX20_04313 0.65 +2.0
4,506,504 + MPMX20_04313 0.67 +0.5
4,506,563 + MPMX20_04313 0.70 -1.8
4,506,585 + MPMX20_04313 0.71 -0.9
4,506,603 - MPMX20_04313 0.72 -0.7
4,506,630 + MPMX20_04313 0.73 -0.6
4,506,631 + MPMX20_04313 0.73 +0.2
4,506,631 + MPMX20_04313 0.73 -0.8
4,506,639 - MPMX20_04313 0.73 +2.0
4,506,677 + MPMX20_04313 0.75 +2.0
4,506,716 + MPMX20_04313 0.77 -0.8
4,506,724 - MPMX20_04313 0.78 -2.0
4,506,733 + MPMX20_04313 0.78 +0.6
4,506,741 - MPMX20_04313 0.79 +0.1
4,506,798 - MPMX20_04313 0.82 +1.4
4,506,816 - MPMX20_04313 0.82 -1.6
4,506,901 + MPMX20_04313 0.87 -0.2
4,506,901 + MPMX20_04313 0.87 -1.5
4,506,909 - MPMX20_04313 0.87 +1.0
4,507,032 + -1.2
4,507,038 - -1.7
4,507,040 - +0.2
4,507,066 - -0.7
4,507,068 - -0.6
4,507,079 + -1.2
4,507,130 - +2.0
4,507,146 + +0.5
4,507,146 + -1.6
4,507,187 - +1.0
4,507,203 + -0.3
4,507,258 - -1.2
4,507,272 - +0.4
4,507,330 + -1.9
4,507,343 - +3.0
4,507,370 + +4.5
4,507,378 - MPMX20_04314 0.10 -0.8
4,507,406 + MPMX20_04314 0.11 +1.5
4,507,413 - MPMX20_04314 0.12 +2.0
4,507,451 + MPMX20_04314 0.13 +0.2
4,507,455 + MPMX20_04314 0.14 -0.2
4,507,502 + MPMX20_04314 0.16 -2.2
4,507,502 + MPMX20_04314 0.16 -0.8
4,507,538 + MPMX20_04314 0.17 -2.4
4,507,553 - MPMX20_04314 0.18 +3.0
4,507,571 + MPMX20_04314 0.19 -0.0
4,507,603 - MPMX20_04314 0.20 -0.9
4,507,812 - MPMX20_04314 0.30 -1.0
4,507,812 - MPMX20_04314 0.30 +0.4
4,507,815 + MPMX20_04314 0.30 +2.0
4,507,823 - MPMX20_04314 0.30 +2.0
4,507,823 - MPMX20_04314 0.30 -0.5
4,507,823 - MPMX20_04314 0.30 -0.0
4,507,835 + MPMX20_04314 0.31 -0.4
4,507,889 + MPMX20_04314 0.33 -0.7
4,507,907 - MPMX20_04314 0.34 -1.1
4,507,948 - MPMX20_04314 0.36 +2.5
4,507,958 - MPMX20_04314 0.37 +1.4
4,507,991 + MPMX20_04314 0.38 -0.8
4,508,018 - MPMX20_04314 0.39 -1.6
4,508,021 + MPMX20_04314 0.39 +2.0
4,508,142 + MPMX20_04314 0.45 +1.1
4,508,150 - MPMX20_04314 0.45 +1.0
4,508,160 + MPMX20_04314 0.46 -1.0

Or see this region's nucleotide sequence