Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03076

Experiment: M9 plate, Mixed culture; Bacillus zanthoxyli TBS_056 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03074 and MPMX20_03075 overlap by 27 nucleotidesMPMX20_03075 and MPMX20_03076 are separated by 42 nucleotidesMPMX20_03076 and MPMX20_03077 overlap by 4 nucleotides MPMX20_03074: MPMX20_03074 - Ribokinase, at 3,224,311 to 3,225,264 _03074 MPMX20_03075: MPMX20_03075 - HTH-type transcriptional repressor NagR, at 3,225,238 to 3,225,984 _03075 MPMX20_03076: MPMX20_03076 - Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase, at 3,226,027 to 3,226,827 _03076 MPMX20_03077: MPMX20_03077 - Hydroxyethylthiazole kinase, at 3,226,824 to 3,227,594 _03077 Position (kb) 3226 3227Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3225.033 kb on + strand, within MPMX20_03074at 3225.041 kb on - strand, within MPMX20_03074at 3225.041 kb on - strand, within MPMX20_03074at 3225.100 kb on + strand, within MPMX20_03074at 3225.161 kb on + strand, within MPMX20_03074at 3225.169 kb on - strandat 3225.235 kb on + strandat 3225.235 kb on + strandat 3225.235 kb on + strandat 3225.235 kb on + strandat 3225.243 kb on - strandat 3225.258 kb on - strandat 3225.274 kb on + strandat 3225.405 kb on + strand, within MPMX20_03075at 3225.503 kb on + strand, within MPMX20_03075at 3225.511 kb on - strand, within MPMX20_03075at 3225.511 kb on - strand, within MPMX20_03075at 3225.592 kb on - strand, within MPMX20_03075at 3225.696 kb on + strand, within MPMX20_03075at 3225.740 kb on - strand, within MPMX20_03075at 3225.793 kb on - strand, within MPMX20_03075at 3225.820 kb on - strand, within MPMX20_03075at 3225.846 kb on + strand, within MPMX20_03075at 3225.846 kb on + strand, within MPMX20_03075at 3225.861 kb on + strand, within MPMX20_03075at 3225.861 kb on + strand, within MPMX20_03075at 3225.999 kb on + strandat 3226.004 kb on + strandat 3226.007 kb on - strandat 3226.018 kb on + strandat 3226.026 kb on - strandat 3226.026 kb on - strandat 3226.056 kb on + strandat 3226.064 kb on - strandat 3226.064 kb on - strandat 3226.074 kb on + strandat 3226.214 kb on + strand, within MPMX20_03076at 3226.298 kb on + strand, within MPMX20_03076at 3226.306 kb on - strand, within MPMX20_03076at 3226.306 kb on - strand, within MPMX20_03076at 3226.365 kb on + strand, within MPMX20_03076at 3226.373 kb on - strand, within MPMX20_03076at 3226.408 kb on - strand, within MPMX20_03076at 3226.408 kb on - strand, within MPMX20_03076at 3226.408 kb on - strand, within MPMX20_03076at 3226.410 kb on + strand, within MPMX20_03076at 3226.410 kb on + strand, within MPMX20_03076at 3226.418 kb on - strand, within MPMX20_03076at 3226.418 kb on - strand, within MPMX20_03076at 3226.511 kb on - strand, within MPMX20_03076at 3226.513 kb on + strand, within MPMX20_03076at 3226.521 kb on - strand, within MPMX20_03076at 3226.521 kb on - strand, within MPMX20_03076at 3226.541 kb on + strand, within MPMX20_03076at 3226.541 kb on + strand, within MPMX20_03076at 3226.541 kb on - strand, within MPMX20_03076at 3226.549 kb on - strand, within MPMX20_03076at 3226.549 kb on - strand, within MPMX20_03076at 3226.577 kb on + strand, within MPMX20_03076at 3226.716 kb on + strand, within MPMX20_03076at 3226.759 kb on - strandat 3226.835 kb on + strandat 3226.843 kb on + strandat 3226.843 kb on + strandat 3226.851 kb on - strandat 3226.851 kb on - strandat 3226.877 kb on - strandat 3226.918 kb on + strand, within MPMX20_03077at 3227.005 kb on + strand, within MPMX20_03077at 3227.033 kb on - strand, within MPMX20_03077at 3227.043 kb on + strand, within MPMX20_03077at 3227.043 kb on + strand, within MPMX20_03077at 3227.051 kb on - strand, within MPMX20_03077at 3227.087 kb on + strand, within MPMX20_03077at 3227.092 kb on + strand, within MPMX20_03077at 3227.095 kb on - strand, within MPMX20_03077at 3227.110 kb on - strand, within MPMX20_03077at 3227.186 kb on + strand, within MPMX20_03077at 3227.196 kb on + strand, within MPMX20_03077at 3227.294 kb on - strand, within MPMX20_03077at 3227.316 kb on + strand, within MPMX20_03077at 3227.330 kb on - strand, within MPMX20_03077at 3227.416 kb on - strand, within MPMX20_03077at 3227.473 kb on - strand, within MPMX20_03077at 3227.503 kb on + strand, within MPMX20_03077at 3227.505 kb on - strand, within MPMX20_03077at 3227.510 kb on - strand, within MPMX20_03077at 3227.529 kb on - strandat 3227.582 kb on + strandat 3227.582 kb on + strandat 3227.590 kb on - strandat 3227.590 kb on - strandat 3227.720 kb on - strandat 3227.742 kb on - strandat 3227.760 kb on + strandat 3227.760 kb on + strandat 3227.760 kb on + strandat 3227.763 kb on - strandat 3227.771 kb on + strandat 3227.780 kb on - strandat 3227.815 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 plate, Mixed culture; Bacillus zanthoxyli TBS_056 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
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3,225,033 + MPMX20_03074 0.76 -1.5
3,225,041 - MPMX20_03074 0.77 -0.8
3,225,041 - MPMX20_03074 0.77 +1.8
3,225,100 + MPMX20_03074 0.83 +0.1
3,225,161 + MPMX20_03074 0.89 -0.4
3,225,169 - -0.9
3,225,235 + +0.2
3,225,235 + -0.1
3,225,235 + +0.1
3,225,235 + +0.1
3,225,243 - +0.2
3,225,258 - -0.7
3,225,274 + -0.6
3,225,405 + MPMX20_03075 0.22 -1.1
3,225,503 + MPMX20_03075 0.35 -1.7
3,225,511 - MPMX20_03075 0.37 -0.8
3,225,511 - MPMX20_03075 0.37 -2.2
3,225,592 - MPMX20_03075 0.47 -3.1
3,225,696 + MPMX20_03075 0.61 -2.6
3,225,740 - MPMX20_03075 0.67 -0.7
3,225,793 - MPMX20_03075 0.74 -0.0
3,225,820 - MPMX20_03075 0.78 -1.0
3,225,846 + MPMX20_03075 0.81 +0.3
3,225,846 + MPMX20_03075 0.81 -1.4
3,225,861 + MPMX20_03075 0.83 -0.3
3,225,861 + MPMX20_03075 0.83 -1.3
3,225,999 + +0.1
3,226,004 + -1.3
3,226,007 - -1.3
3,226,018 + +1.3
3,226,026 - +1.3
3,226,026 - -1.3
3,226,056 + -0.3
3,226,064 - +0.4
3,226,064 - -2.6
3,226,074 + -2.6
3,226,214 + MPMX20_03076 0.23 +1.9
3,226,298 + MPMX20_03076 0.34 -0.3
3,226,306 - MPMX20_03076 0.35 -1.3
3,226,306 - MPMX20_03076 0.35 -1.3
3,226,365 + MPMX20_03076 0.42 -3.4
3,226,373 - MPMX20_03076 0.43 -1.8
3,226,408 - MPMX20_03076 0.48 -0.4
3,226,408 - MPMX20_03076 0.48 -1.4
3,226,408 - MPMX20_03076 0.48 -2.1
3,226,410 + MPMX20_03076 0.48 -1.5
3,226,410 + MPMX20_03076 0.48 -2.6
3,226,418 - MPMX20_03076 0.49 -0.1
3,226,418 - MPMX20_03076 0.49 -0.8
3,226,511 - MPMX20_03076 0.60 +0.2
3,226,513 + MPMX20_03076 0.61 -0.7
3,226,521 - MPMX20_03076 0.62 -1.0
3,226,521 - MPMX20_03076 0.62 -1.4
3,226,541 + MPMX20_03076 0.64 -0.7
3,226,541 + MPMX20_03076 0.64 +0.0
3,226,541 - MPMX20_03076 0.64 +0.6
3,226,549 - MPMX20_03076 0.65 +0.9
3,226,549 - MPMX20_03076 0.65 -2.5
3,226,577 + MPMX20_03076 0.69 -0.9
3,226,716 + MPMX20_03076 0.86 -2.2
3,226,759 - -0.3
3,226,835 + -1.0
3,226,843 + +0.2
3,226,843 + +0.2
3,226,851 - -1.4
3,226,851 - -1.6
3,226,877 - -1.7
3,226,918 + MPMX20_03077 0.12 -1.3
3,227,005 + MPMX20_03077 0.23 -2.4
3,227,033 - MPMX20_03077 0.27 -0.7
3,227,043 + MPMX20_03077 0.28 -1.6
3,227,043 + MPMX20_03077 0.28 +0.8
3,227,051 - MPMX20_03077 0.29 +0.6
3,227,087 + MPMX20_03077 0.34 +2.4
3,227,092 + MPMX20_03077 0.35 -0.0
3,227,095 - MPMX20_03077 0.35 +0.4
3,227,110 - MPMX20_03077 0.37 -0.8
3,227,186 + MPMX20_03077 0.47 -0.1
3,227,196 + MPMX20_03077 0.48 +0.7
3,227,294 - MPMX20_03077 0.61 -0.2
3,227,316 + MPMX20_03077 0.64 -1.3
3,227,330 - MPMX20_03077 0.66 -0.6
3,227,416 - MPMX20_03077 0.77 -0.8
3,227,473 - MPMX20_03077 0.84 -0.4
3,227,503 + MPMX20_03077 0.88 -0.1
3,227,505 - MPMX20_03077 0.88 +2.8
3,227,510 - MPMX20_03077 0.89 -0.9
3,227,529 - -0.3
3,227,582 + -1.5
3,227,582 + +1.3
3,227,590 - -1.2
3,227,590 - -1.0
3,227,720 - -1.3
3,227,742 - -0.6
3,227,760 + -1.0
3,227,760 + +1.3
3,227,760 + -0.4
3,227,763 - -1.3
3,227,771 + +1.3
3,227,780 - +0.3
3,227,815 + -2.1

Or see this region's nucleotide sequence