Experiment: M9 plate, Mixed culture; Bacillus zanthoxyli TBS_056 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02346 and MPMX20_02347 are separated by 97 nucleotides MPMX20_02347 and MPMX20_02348 are separated by 28 nucleotides
MPMX20_02346: MPMX20_02346 - Methyl-accepting chemotaxis protein III, at 2,471,251 to 2,472,801
_02346
MPMX20_02347: MPMX20_02347 - Catabolite repressor/activator, at 2,472,899 to 2,473,915
_02347
MPMX20_02348: MPMX20_02348 - Sucrose-6-phosphate hydrolase, at 2,473,944 to 2,475,350
_02348
Position (kb)
2472
2473
2474 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5
6 at 2472.045 kb on + strand, within MPMX20_02346 at 2472.045 kb on + strand, within MPMX20_02346 at 2472.048 kb on + strand, within MPMX20_02346 at 2472.053 kb on - strand, within MPMX20_02346 at 2472.053 kb on - strand, within MPMX20_02346 at 2472.217 kb on + strand, within MPMX20_02346 at 2472.337 kb on - strand, within MPMX20_02346 at 2472.355 kb on - strand, within MPMX20_02346 at 2472.357 kb on + strand, within MPMX20_02346 at 2472.365 kb on - strand, within MPMX20_02346 at 2472.365 kb on - strand, within MPMX20_02346 at 2472.365 kb on - strand, within MPMX20_02346 at 2472.365 kb on - strand, within MPMX20_02346 at 2472.417 kb on - strand, within MPMX20_02346 at 2472.474 kb on - strand, within MPMX20_02346 at 2472.474 kb on - strand, within MPMX20_02346 at 2472.517 kb on + strand, within MPMX20_02346 at 2472.541 kb on + strand, within MPMX20_02346 at 2472.606 kb on + strand, within MPMX20_02346 at 2472.607 kb on + strand, within MPMX20_02346 at 2472.609 kb on + strand, within MPMX20_02346 at 2472.614 kb on + strand, within MPMX20_02346 at 2472.614 kb on + strand, within MPMX20_02346 at 2472.615 kb on - strand, within MPMX20_02346 at 2472.617 kb on - strand, within MPMX20_02346 at 2472.617 kb on - strand, within MPMX20_02346 at 2472.622 kb on - strand, within MPMX20_02346 at 2472.627 kb on + strand, within MPMX20_02346 at 2472.627 kb on + strand, within MPMX20_02346 at 2472.628 kb on + strand, within MPMX20_02346 at 2472.629 kb on + strand, within MPMX20_02346 at 2472.635 kb on - strand, within MPMX20_02346 at 2472.658 kb on + strand at 2472.720 kb on + strand at 2472.720 kb on + strand at 2472.720 kb on + strand at 2472.728 kb on - strand at 2472.728 kb on - strand at 2472.730 kb on + strand at 2472.899 kb on - strand at 2472.904 kb on - strand at 2472.904 kb on - strand at 2472.904 kb on - strand at 2472.904 kb on - strand at 2472.904 kb on - strand at 2472.905 kb on - strand at 2472.928 kb on - strand at 2472.991 kb on + strand at 2472.991 kb on + strand at 2472.991 kb on + strand at 2472.999 kb on - strand at 2472.999 kb on - strand at 2472.999 kb on - strand at 2473.004 kb on - strand, within MPMX20_02347 at 2473.075 kb on + strand, within MPMX20_02347 at 2473.083 kb on - strand, within MPMX20_02347 at 2473.083 kb on - strand, within MPMX20_02347 at 2473.093 kb on - strand, within MPMX20_02347 at 2473.110 kb on + strand, within MPMX20_02347 at 2473.110 kb on + strand, within MPMX20_02347 at 2473.110 kb on + strand, within MPMX20_02347 at 2473.111 kb on + strand, within MPMX20_02347 at 2473.118 kb on - strand, within MPMX20_02347 at 2473.118 kb on - strand, within MPMX20_02347 at 2473.118 kb on - strand, within MPMX20_02347 at 2473.119 kb on - strand, within MPMX20_02347 at 2473.120 kb on + strand, within MPMX20_02347 at 2473.123 kb on - strand, within MPMX20_02347 at 2473.128 kb on - strand, within MPMX20_02347 at 2473.128 kb on - strand, within MPMX20_02347 at 2473.128 kb on - strand, within MPMX20_02347 at 2473.138 kb on - strand, within MPMX20_02347 at 2473.140 kb on + strand, within MPMX20_02347 at 2473.148 kb on - strand, within MPMX20_02347 at 2473.152 kb on + strand, within MPMX20_02347 at 2473.174 kb on - strand, within MPMX20_02347 at 2473.187 kb on + strand, within MPMX20_02347 at 2473.195 kb on - strand, within MPMX20_02347 at 2473.294 kb on - strand, within MPMX20_02347 at 2473.297 kb on + strand, within MPMX20_02347 at 2473.305 kb on - strand, within MPMX20_02347 at 2473.332 kb on + strand, within MPMX20_02347 at 2473.376 kb on - strand, within MPMX20_02347 at 2473.492 kb on + strand, within MPMX20_02347 at 2473.500 kb on - strand, within MPMX20_02347 at 2473.571 kb on - strand, within MPMX20_02347 at 2473.681 kb on - strand, within MPMX20_02347 at 2473.704 kb on - strand, within MPMX20_02347 at 2473.746 kb on + strand, within MPMX20_02347 at 2473.816 kb on + strand at 2473.873 kb on + strand at 2473.893 kb on - strand at 2473.915 kb on + strand at 2473.941 kb on + strand at 2473.941 kb on + strand at 2474.013 kb on - strand at 2474.091 kb on + strand, within MPMX20_02348 at 2474.136 kb on + strand, within MPMX20_02348 at 2474.144 kb on - strand, within MPMX20_02348 at 2474.169 kb on + strand, within MPMX20_02348 at 2474.237 kb on - strand, within MPMX20_02348 at 2474.290 kb on + strand, within MPMX20_02348 at 2474.298 kb on - strand, within MPMX20_02348 at 2474.373 kb on + strand, within MPMX20_02348 at 2474.438 kb on + strand, within MPMX20_02348 at 2474.499 kb on + strand, within MPMX20_02348 at 2474.499 kb on + strand, within MPMX20_02348 at 2474.517 kb on - strand, within MPMX20_02348 at 2474.568 kb on + strand, within MPMX20_02348 at 2474.568 kb on + strand, within MPMX20_02348 at 2474.642 kb on + strand, within MPMX20_02348 at 2474.687 kb on + strand, within MPMX20_02348 at 2474.687 kb on + strand, within MPMX20_02348 at 2474.732 kb on + strand, within MPMX20_02348 at 2474.740 kb on - strand, within MPMX20_02348 at 2474.758 kb on - strand, within MPMX20_02348 at 2474.790 kb on + strand, within MPMX20_02348 at 2474.838 kb on + strand, within MPMX20_02348 at 2474.840 kb on + strand, within MPMX20_02348 at 2474.864 kb on + strand, within MPMX20_02348 at 2474.912 kb on - strand, within MPMX20_02348
Per-strain Table
Position Strand Gene LocusTag Fraction M9 plate, Mixed culture; Bacillus zanthoxyli TBS_056 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct remove 2,472,045 + MPMX20_02346 0.51 -0.7 2,472,045 + MPMX20_02346 0.51 +0.8 2,472,048 + MPMX20_02346 0.51 -0.6 2,472,053 - MPMX20_02346 0.52 +0.4 2,472,053 - MPMX20_02346 0.52 -0.3 2,472,217 + MPMX20_02346 0.62 +2.8 2,472,337 - MPMX20_02346 0.70 -1.5 2,472,355 - MPMX20_02346 0.71 +1.8 2,472,357 + MPMX20_02346 0.71 -1.8 2,472,365 - MPMX20_02346 0.72 -0.5 2,472,365 - MPMX20_02346 0.72 +0.8 2,472,365 - MPMX20_02346 0.72 +0.0 2,472,365 - MPMX20_02346 0.72 -1.7 2,472,417 - MPMX20_02346 0.75 -1.1 2,472,474 - MPMX20_02346 0.79 +1.3 2,472,474 - MPMX20_02346 0.79 -1.0 2,472,517 + MPMX20_02346 0.82 +1.4 2,472,541 + MPMX20_02346 0.83 -1.1 2,472,606 + MPMX20_02346 0.87 -0.4 2,472,607 + MPMX20_02346 0.87 -1.7 2,472,609 + MPMX20_02346 0.88 -1.8 2,472,614 + MPMX20_02346 0.88 +1.6 2,472,614 + MPMX20_02346 0.88 +0.7 2,472,615 - MPMX20_02346 0.88 -0.2 2,472,617 - MPMX20_02346 0.88 -2.9 2,472,617 - MPMX20_02346 0.88 +1.8 2,472,622 - MPMX20_02346 0.88 -0.6 2,472,627 + MPMX20_02346 0.89 +0.0 2,472,627 + MPMX20_02346 0.89 -0.6 2,472,628 + MPMX20_02346 0.89 +2.8 2,472,629 + MPMX20_02346 0.89 -1.6 2,472,635 - MPMX20_02346 0.89 +1.5 2,472,658 + +0.3 2,472,720 + +0.3 2,472,720 + -0.3 2,472,720 + -0.7 2,472,728 - -0.6 2,472,728 - +0.5 2,472,730 + -0.7 2,472,899 - -2.2 2,472,904 - +0.8 2,472,904 - -0.3 2,472,904 - +0.0 2,472,904 - +0.0 2,472,904 - -0.4 2,472,905 - -0.0 2,472,928 - +0.3 2,472,991 + +0.3 2,472,991 + +0.5 2,472,991 + +1.4 2,472,999 - +0.3 2,472,999 - +0.7 2,472,999 - +0.5 2,473,004 - MPMX20_02347 0.10 +0.3 2,473,075 + MPMX20_02347 0.17 +0.4 2,473,083 - MPMX20_02347 0.18 +0.5 2,473,083 - MPMX20_02347 0.18 +0.8 2,473,093 - MPMX20_02347 0.19 -1.9 2,473,110 + MPMX20_02347 0.21 +2.6 2,473,110 + MPMX20_02347 0.21 +0.0 2,473,110 + MPMX20_02347 0.21 -0.0 2,473,111 + MPMX20_02347 0.21 -1.0 2,473,118 - MPMX20_02347 0.22 -0.7 2,473,118 - MPMX20_02347 0.22 -1.9 2,473,118 - MPMX20_02347 0.22 -1.9 2,473,119 - MPMX20_02347 0.22 -1.3 2,473,120 + MPMX20_02347 0.22 +6.1 2,473,123 - MPMX20_02347 0.22 -1.1 2,473,128 - MPMX20_02347 0.23 -1.2 2,473,128 - MPMX20_02347 0.23 -0.8 2,473,128 - MPMX20_02347 0.23 -1.1 2,473,138 - MPMX20_02347 0.24 -0.3 2,473,140 + MPMX20_02347 0.24 +1.0 2,473,148 - MPMX20_02347 0.24 -0.9 2,473,152 + MPMX20_02347 0.25 -0.5 2,473,174 - MPMX20_02347 0.27 -0.1 2,473,187 + MPMX20_02347 0.28 +1.7 2,473,195 - MPMX20_02347 0.29 -0.9 2,473,294 - MPMX20_02347 0.39 +2.3 2,473,297 + MPMX20_02347 0.39 +0.0 2,473,305 - MPMX20_02347 0.40 -0.9 2,473,332 + MPMX20_02347 0.43 -0.5 2,473,376 - MPMX20_02347 0.47 -1.3 2,473,492 + MPMX20_02347 0.58 +0.2 2,473,500 - MPMX20_02347 0.59 +0.3 2,473,571 - MPMX20_02347 0.66 +0.7 2,473,681 - MPMX20_02347 0.77 -0.0 2,473,704 - MPMX20_02347 0.79 -0.7 2,473,746 + MPMX20_02347 0.83 +2.1 2,473,816 + +0.8 2,473,873 + -1.6 2,473,893 - +0.3 2,473,915 + -0.7 2,473,941 + -0.8 2,473,941 + -1.6 2,474,013 - +0.3 2,474,091 + MPMX20_02348 0.10 -1.0 2,474,136 + MPMX20_02348 0.14 +1.3 2,474,144 - MPMX20_02348 0.14 +0.4 2,474,169 + MPMX20_02348 0.16 +0.1 2,474,237 - MPMX20_02348 0.21 +0.8 2,474,290 + MPMX20_02348 0.25 +0.0 2,474,298 - MPMX20_02348 0.25 -1.1 2,474,373 + MPMX20_02348 0.30 -0.4 2,474,438 + MPMX20_02348 0.35 +0.1 2,474,499 + MPMX20_02348 0.39 -0.3 2,474,499 + MPMX20_02348 0.39 -0.2 2,474,517 - MPMX20_02348 0.41 +1.0 2,474,568 + MPMX20_02348 0.44 -2.2 2,474,568 + MPMX20_02348 0.44 -0.1 2,474,642 + MPMX20_02348 0.50 -0.5 2,474,687 + MPMX20_02348 0.53 +1.8 2,474,687 + MPMX20_02348 0.53 +0.1 2,474,732 + MPMX20_02348 0.56 -0.7 2,474,740 - MPMX20_02348 0.57 +1.3 2,474,758 - MPMX20_02348 0.58 -1.6 2,474,790 + MPMX20_02348 0.60 +0.7 2,474,838 + MPMX20_02348 0.64 -1.0 2,474,840 + MPMX20_02348 0.64 -2.1 2,474,864 + MPMX20_02348 0.65 -1.4 2,474,912 - MPMX20_02348 0.69 +0.0
Or see this region's nucleotide sequence