Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00838

Experiment: M9 plate, Mixed culture; Bacillus zanthoxyli TBS_056 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00836 and MPMX20_00837 are separated by 50 nucleotidesMPMX20_00837 and MPMX20_00838 overlap by 1 nucleotidesMPMX20_00838 and MPMX20_00839 overlap by 4 nucleotides MPMX20_00836: MPMX20_00836 - Ferrichrome outer membrane transporter/phage receptor, at 880,446 to 882,665 _00836 MPMX20_00837: MPMX20_00837 - Iron(3+)-hydroxamate import ATP-binding protein FhuC, at 882,716 to 883,513 _00837 MPMX20_00838: MPMX20_00838 - Iron(3+)-hydroxamate-binding protein FhuD, at 883,513 to 884,403 _00838 MPMX20_00839: MPMX20_00839 - Iron(3+)-hydroxamate import system permease protein FhuB, at 884,400 to 886,382 _00839 Position (kb) 883 884 885Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 882.549 kb on - strandat 882.622 kb on - strandat 882.622 kb on - strandat 882.669 kb on + strandat 882.719 kb on - strandat 882.791 kb on - strandat 882.836 kb on + strand, within MPMX20_00837at 883.009 kb on + strand, within MPMX20_00837at 883.009 kb on + strand, within MPMX20_00837at 883.011 kb on + strand, within MPMX20_00837at 883.011 kb on + strand, within MPMX20_00837at 883.017 kb on - strand, within MPMX20_00837at 883.017 kb on - strand, within MPMX20_00837at 883.017 kb on - strand, within MPMX20_00837at 883.038 kb on - strand, within MPMX20_00837at 883.167 kb on - strand, within MPMX20_00837at 883.202 kb on + strand, within MPMX20_00837at 883.207 kb on + strand, within MPMX20_00837at 883.210 kb on - strand, within MPMX20_00837at 883.215 kb on - strand, within MPMX20_00837at 883.220 kb on - strand, within MPMX20_00837at 883.252 kb on - strand, within MPMX20_00837at 883.295 kb on + strand, within MPMX20_00837at 883.308 kb on + strand, within MPMX20_00837at 883.308 kb on + strand, within MPMX20_00837at 883.308 kb on + strand, within MPMX20_00837at 883.325 kb on + strand, within MPMX20_00837at 883.364 kb on - strand, within MPMX20_00837at 883.373 kb on - strand, within MPMX20_00837at 883.385 kb on + strand, within MPMX20_00837at 883.393 kb on - strand, within MPMX20_00837at 883.418 kb on - strand, within MPMX20_00837at 883.452 kb on - strandat 883.525 kb on + strandat 883.616 kb on - strand, within MPMX20_00838at 883.685 kb on - strand, within MPMX20_00838at 883.709 kb on + strand, within MPMX20_00838at 883.724 kb on + strand, within MPMX20_00838at 883.764 kb on - strand, within MPMX20_00838at 883.783 kb on - strand, within MPMX20_00838at 883.833 kb on - strand, within MPMX20_00838at 883.868 kb on + strand, within MPMX20_00838at 883.936 kb on + strand, within MPMX20_00838at 883.949 kb on + strand, within MPMX20_00838at 884.003 kb on + strand, within MPMX20_00838at 884.003 kb on - strand, within MPMX20_00838at 884.108 kb on - strand, within MPMX20_00838at 884.120 kb on + strand, within MPMX20_00838at 884.176 kb on - strand, within MPMX20_00838at 884.215 kb on + strand, within MPMX20_00838at 884.222 kb on + strand, within MPMX20_00838at 884.420 kb on + strandat 884.430 kb on + strandat 884.611 kb on + strand, within MPMX20_00839at 884.648 kb on + strand, within MPMX20_00839at 884.648 kb on + strand, within MPMX20_00839at 884.654 kb on + strand, within MPMX20_00839at 884.654 kb on + strand, within MPMX20_00839at 884.656 kb on - strand, within MPMX20_00839at 884.656 kb on - strand, within MPMX20_00839at 884.697 kb on + strand, within MPMX20_00839at 884.721 kb on + strand, within MPMX20_00839at 884.819 kb on + strand, within MPMX20_00839at 884.827 kb on - strand, within MPMX20_00839at 884.867 kb on - strand, within MPMX20_00839at 884.920 kb on + strand, within MPMX20_00839at 884.938 kb on + strand, within MPMX20_00839at 884.948 kb on + strand, within MPMX20_00839at 885.128 kb on - strand, within MPMX20_00839at 885.138 kb on - strand, within MPMX20_00839at 885.138 kb on - strand, within MPMX20_00839at 885.230 kb on + strand, within MPMX20_00839at 885.233 kb on - strand, within MPMX20_00839at 885.259 kb on + strand, within MPMX20_00839at 885.351 kb on - strand, within MPMX20_00839

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 plate, Mixed culture; Bacillus zanthoxyli TBS_056 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
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882,549 - -1.3
882,622 - +0.8
882,622 - -0.5
882,669 + -0.6
882,719 - -2.2
882,791 - -1.2
882,836 + MPMX20_00837 0.15 +0.0
883,009 + MPMX20_00837 0.37 +0.7
883,009 + MPMX20_00837 0.37 -0.6
883,011 + MPMX20_00837 0.37 +0.3
883,011 + MPMX20_00837 0.37 -1.1
883,017 - MPMX20_00837 0.38 -0.1
883,017 - MPMX20_00837 0.38 +0.0
883,017 - MPMX20_00837 0.38 -1.0
883,038 - MPMX20_00837 0.40 -0.3
883,167 - MPMX20_00837 0.57 -0.5
883,202 + MPMX20_00837 0.61 +0.0
883,207 + MPMX20_00837 0.62 -1.1
883,210 - MPMX20_00837 0.62 +0.3
883,215 - MPMX20_00837 0.63 +0.9
883,220 - MPMX20_00837 0.63 -1.4
883,252 - MPMX20_00837 0.67 -1.4
883,295 + MPMX20_00837 0.73 -2.0
883,308 + MPMX20_00837 0.74 +1.4
883,308 + MPMX20_00837 0.74 -1.0
883,308 + MPMX20_00837 0.74 +0.5
883,325 + MPMX20_00837 0.76 -1.6
883,364 - MPMX20_00837 0.81 +4.9
883,373 - MPMX20_00837 0.82 -1.1
883,385 + MPMX20_00837 0.84 -1.1
883,393 - MPMX20_00837 0.85 +0.5
883,418 - MPMX20_00837 0.88 +0.5
883,452 - -0.3
883,525 + -0.7
883,616 - MPMX20_00838 0.12 +1.3
883,685 - MPMX20_00838 0.19 -1.5
883,709 + MPMX20_00838 0.22 -0.8
883,724 + MPMX20_00838 0.24 -1.5
883,764 - MPMX20_00838 0.28 -1.1
883,783 - MPMX20_00838 0.30 +2.9
883,833 - MPMX20_00838 0.36 -0.7
883,868 + MPMX20_00838 0.40 +1.5
883,936 + MPMX20_00838 0.47 -1.2
883,949 + MPMX20_00838 0.49 -1.5
884,003 + MPMX20_00838 0.55 -0.5
884,003 - MPMX20_00838 0.55 -1.5
884,108 - MPMX20_00838 0.67 -0.7
884,120 + MPMX20_00838 0.68 -0.8
884,176 - MPMX20_00838 0.74 -1.0
884,215 + MPMX20_00838 0.79 -2.2
884,222 + MPMX20_00838 0.80 -2.1
884,420 + -0.2
884,430 + -0.1
884,611 + MPMX20_00839 0.11 +0.9
884,648 + MPMX20_00839 0.13 -2.6
884,648 + MPMX20_00839 0.13 +0.9
884,654 + MPMX20_00839 0.13 -0.9
884,654 + MPMX20_00839 0.13 +0.3
884,656 - MPMX20_00839 0.13 +0.0
884,656 - MPMX20_00839 0.13 +2.9
884,697 + MPMX20_00839 0.15 +0.0
884,721 + MPMX20_00839 0.16 -0.3
884,819 + MPMX20_00839 0.21 -0.3
884,827 - MPMX20_00839 0.22 -0.5
884,867 - MPMX20_00839 0.24 +0.0
884,920 + MPMX20_00839 0.26 +1.9
884,938 + MPMX20_00839 0.27 -0.6
884,948 + MPMX20_00839 0.28 -0.7
885,128 - MPMX20_00839 0.37 +1.0
885,138 - MPMX20_00839 0.37 +0.9
885,138 - MPMX20_00839 0.37 -1.9
885,230 + MPMX20_00839 0.42 +0.3
885,233 - MPMX20_00839 0.42 -1.5
885,259 + MPMX20_00839 0.43 +1.1
885,351 - MPMX20_00839 0.48 -1.2

Or see this region's nucleotide sequence