Experiment: M9 plate, Mixed culture; Bacillus zanthoxyli TBS_056 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_00514 and MPMX20_00515 are separated by 197 nucleotides MPMX20_00515 and MPMX20_00516 are separated by 93 nucleotides MPMX20_00516 and MPMX20_00517 are separated by 95 nucleotides
MPMX20_00514: MPMX20_00514 - Fructose-1,6-bisphosphatase class 1, at 531,789 to 532,787
_00514
MPMX20_00515: MPMX20_00515 - UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl- meso-2,6-diaminoheptandioate ligase, at 532,985 to 534,361
_00515
MPMX20_00516: MPMX20_00516 - hypothetical protein, at 534,455 to 535,006
_00516
MPMX20_00517: MPMX20_00517 - Metalloprotease PmbA, at 535,102 to 536,454
_00517
Position (kb) 532
533
534
535 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 531.991 kb on + strand, within MPMX20_00514 at 531.993 kb on - strand, within MPMX20_00514 at 532.003 kb on - strand, within MPMX20_00514 at 532.014 kb on + strand, within MPMX20_00514 at 532.016 kb on + strand, within MPMX20_00514 at 532.022 kb on - strand, within MPMX20_00514 at 532.035 kb on - strand, within MPMX20_00514 at 532.042 kb on + strand, within MPMX20_00514 at 532.050 kb on - strand, within MPMX20_00514 at 532.089 kb on - strand, within MPMX20_00514 at 532.107 kb on - strand, within MPMX20_00514 at 532.141 kb on + strand, within MPMX20_00514 at 532.190 kb on - strand, within MPMX20_00514 at 532.191 kb on - strand, within MPMX20_00514 at 532.211 kb on - strand, within MPMX20_00514 at 532.211 kb on - strand, within MPMX20_00514 at 532.265 kb on - strand, within MPMX20_00514 at 532.279 kb on + strand, within MPMX20_00514 at 532.279 kb on + strand, within MPMX20_00514 at 532.287 kb on - strand, within MPMX20_00514 at 532.287 kb on - strand, within MPMX20_00514 at 532.287 kb on - strand, within MPMX20_00514 at 532.287 kb on - strand, within MPMX20_00514 at 532.400 kb on - strand, within MPMX20_00514 at 532.469 kb on - strand, within MPMX20_00514 at 532.469 kb on - strand, within MPMX20_00514 at 532.474 kb on - strand, within MPMX20_00514 at 532.484 kb on + strand, within MPMX20_00514 at 532.492 kb on - strand, within MPMX20_00514 at 532.527 kb on + strand, within MPMX20_00514 at 532.536 kb on - strand, within MPMX20_00514 at 532.559 kb on + strand, within MPMX20_00514 at 532.559 kb on + strand, within MPMX20_00514 at 532.599 kb on + strand, within MPMX20_00514 at 532.612 kb on + strand, within MPMX20_00514 at 532.614 kb on - strand, within MPMX20_00514 at 532.628 kb on - strand, within MPMX20_00514 at 532.660 kb on + strand, within MPMX20_00514 at 532.673 kb on - strand, within MPMX20_00514 at 532.705 kb on - strand at 532.713 kb on - strand at 532.717 kb on + strand at 532.717 kb on + strand at 532.717 kb on + strand at 532.717 kb on + strand at 532.717 kb on + strand at 532.717 kb on + strand at 532.718 kb on - strand at 532.725 kb on - strand at 532.729 kb on + strand at 532.754 kb on - strand at 532.780 kb on - strand at 532.813 kb on - strand at 532.873 kb on - strand at 532.878 kb on + strand at 532.878 kb on + strand at 532.878 kb on + strand at 532.883 kb on + strand at 532.883 kb on + strand at 532.883 kb on + strand at 532.891 kb on - strand at 532.944 kb on - strand at 532.944 kb on - strand at 532.981 kb on - strand at 533.000 kb on - strand at 533.032 kb on + strand at 533.077 kb on - strand at 533.155 kb on + strand, within MPMX20_00515 at 533.188 kb on - strand, within MPMX20_00515 at 533.233 kb on - strand, within MPMX20_00515 at 533.250 kb on + strand, within MPMX20_00515 at 533.253 kb on - strand, within MPMX20_00515 at 533.253 kb on - strand, within MPMX20_00515 at 533.402 kb on - strand, within MPMX20_00515 at 533.473 kb on - strand, within MPMX20_00515 at 533.473 kb on - strand, within MPMX20_00515 at 533.473 kb on - strand, within MPMX20_00515 at 533.502 kb on - strand, within MPMX20_00515 at 533.502 kb on - strand, within MPMX20_00515 at 533.572 kb on + strand, within MPMX20_00515 at 533.572 kb on + strand, within MPMX20_00515 at 533.591 kb on + strand, within MPMX20_00515 at 533.616 kb on + strand, within MPMX20_00515 at 533.621 kb on + strand, within MPMX20_00515 at 533.626 kb on + strand, within MPMX20_00515 at 533.629 kb on - strand, within MPMX20_00515 at 533.765 kb on + strand, within MPMX20_00515 at 533.773 kb on - strand, within MPMX20_00515 at 533.786 kb on - strand, within MPMX20_00515 at 533.883 kb on - strand, within MPMX20_00515 at 533.925 kb on + strand, within MPMX20_00515 at 533.925 kb on + strand, within MPMX20_00515 at 533.933 kb on - strand, within MPMX20_00515 at 533.952 kb on + strand, within MPMX20_00515 at 533.960 kb on + strand, within MPMX20_00515 at 534.062 kb on - strand, within MPMX20_00515 at 534.062 kb on - strand, within MPMX20_00515 at 534.114 kb on + strand, within MPMX20_00515 at 534.122 kb on - strand, within MPMX20_00515 at 534.205 kb on + strand, within MPMX20_00515 at 534.211 kb on - strand, within MPMX20_00515 at 534.244 kb on + strand at 534.259 kb on + strand at 534.335 kb on - strand at 534.411 kb on - strand at 534.427 kb on + strand at 534.435 kb on - strand at 534.437 kb on - strand at 534.448 kb on - strand at 534.460 kb on - strand at 535.036 kb on - strand at 535.047 kb on + strand at 535.063 kb on - strand at 535.070 kb on + strand at 535.070 kb on + strand at 535.078 kb on - strand at 535.090 kb on + strand at 535.100 kb on + strand at 535.100 kb on - strand at 535.100 kb on - strand at 535.100 kb on - strand at 535.108 kb on - strand at 535.125 kb on - strand at 535.143 kb on + strand at 535.151 kb on - strand at 535.177 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 plate, Mixed culture; Bacillus zanthoxyli TBS_056 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct remove 531,991 + MPMX20_00514 0.20 -1.3 531,993 - MPMX20_00514 0.20 +0.8 532,003 - MPMX20_00514 0.21 +1.2 532,014 + MPMX20_00514 0.23 +2.8 532,016 + MPMX20_00514 0.23 +0.8 532,022 - MPMX20_00514 0.23 +0.8 532,035 - MPMX20_00514 0.25 -0.8 532,042 + MPMX20_00514 0.25 +1.8 532,050 - MPMX20_00514 0.26 +2.8 532,089 - MPMX20_00514 0.30 -0.5 532,107 - MPMX20_00514 0.32 -1.0 532,141 + MPMX20_00514 0.35 +0.2 532,190 - MPMX20_00514 0.40 +1.5 532,191 - MPMX20_00514 0.40 -0.7 532,211 - MPMX20_00514 0.42 +0.8 532,211 - MPMX20_00514 0.42 +2.8 532,265 - MPMX20_00514 0.48 +0.8 532,279 + MPMX20_00514 0.49 +1.8 532,279 + MPMX20_00514 0.49 +0.2 532,287 - MPMX20_00514 0.50 +1.2 532,287 - MPMX20_00514 0.50 +0.5 532,287 - MPMX20_00514 0.50 +1.5 532,287 - MPMX20_00514 0.50 -1.3 532,400 - MPMX20_00514 0.61 -0.8 532,469 - MPMX20_00514 0.68 +1.5 532,469 - MPMX20_00514 0.68 +1.2 532,474 - MPMX20_00514 0.69 +0.2 532,484 + MPMX20_00514 0.70 -0.0 532,492 - MPMX20_00514 0.70 +2.4 532,527 + MPMX20_00514 0.74 +1.2 532,536 - MPMX20_00514 0.75 +1.2 532,559 + MPMX20_00514 0.77 +1.2 532,559 + MPMX20_00514 0.77 -0.8 532,599 + MPMX20_00514 0.81 +0.8 532,612 + MPMX20_00514 0.82 +1.2 532,614 - MPMX20_00514 0.83 -0.9 532,628 - MPMX20_00514 0.84 +2.8 532,660 + MPMX20_00514 0.87 -0.2 532,673 - MPMX20_00514 0.88 -0.0 532,705 - -0.5 532,713 - -0.0 532,717 + +2.8 532,717 + +2.8 532,717 + +2.8 532,717 + -0.0 532,717 + +0.2 532,717 + -0.0 532,718 - +1.8 532,725 - +0.5 532,729 + -0.4 532,754 - -0.0 532,780 - +0.8 532,813 - -0.0 532,873 - -0.9 532,878 + +1.5 532,878 + +0.6 532,878 + -1.1 532,883 + -1.1 532,883 + -1.2 532,883 + -0.0 532,891 - -0.2 532,944 - -0.3 532,944 - -0.0 532,981 - -0.7 533,000 - -0.4 533,032 + -0.7 533,077 - -1.3 533,155 + MPMX20_00515 0.12 -1.0 533,188 - MPMX20_00515 0.15 +1.8 533,233 - MPMX20_00515 0.18 +0.2 533,250 + MPMX20_00515 0.19 -0.5 533,253 - MPMX20_00515 0.19 +0.2 533,253 - MPMX20_00515 0.19 -1.5 533,402 - MPMX20_00515 0.30 -1.5 533,473 - MPMX20_00515 0.35 -0.0 533,473 - MPMX20_00515 0.35 -0.7 533,473 - MPMX20_00515 0.35 +0.5 533,502 - MPMX20_00515 0.38 -0.8 533,502 - MPMX20_00515 0.38 -1.2 533,572 + MPMX20_00515 0.43 +0.3 533,572 + MPMX20_00515 0.43 -0.5 533,591 + MPMX20_00515 0.44 -0.5 533,616 + MPMX20_00515 0.46 +0.2 533,621 + MPMX20_00515 0.46 +0.5 533,626 + MPMX20_00515 0.47 -1.0 533,629 - MPMX20_00515 0.47 -1.7 533,765 + MPMX20_00515 0.57 -0.2 533,773 - MPMX20_00515 0.57 +1.6 533,786 - MPMX20_00515 0.58 -0.7 533,883 - MPMX20_00515 0.65 +2.8 533,925 + MPMX20_00515 0.68 +0.2 533,925 + MPMX20_00515 0.68 -0.2 533,933 - MPMX20_00515 0.69 -0.2 533,952 + MPMX20_00515 0.70 -0.0 533,960 + MPMX20_00515 0.71 -2.2 534,062 - MPMX20_00515 0.78 +0.8 534,062 - MPMX20_00515 0.78 -1.0 534,114 + MPMX20_00515 0.82 -0.3 534,122 - MPMX20_00515 0.83 -1.8 534,205 + MPMX20_00515 0.89 -0.1 534,211 - MPMX20_00515 0.89 -1.0 534,244 + +0.2 534,259 + +0.1 534,335 - -0.0 534,411 - +0.1 534,427 + +0.1 534,435 - +3.5 534,437 - -0.5 534,448 - -0.4 534,460 - -0.7 535,036 - -1.0 535,047 + -0.2 535,063 - -0.6 535,070 + +0.8 535,070 + +1.0 535,078 - -1.5 535,090 + +0.4 535,100 + +1.8 535,100 - -0.2 535,100 - -0.6 535,100 - -0.2 535,108 - +1.5 535,125 - -1.0 535,143 + +0.2 535,151 - -0.8 535,177 - -1.5
Or see this region's nucleotide sequence