Experiment: M9 plate, Mixed culture; Bacillus zanthoxyli TBS_056 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_00166 and MPMX20_00167 are separated by 103 nucleotides MPMX20_00167 and MPMX20_00168 overlap by 1 nucleotides MPMX20_00168 and MPMX20_00169 overlap by 8 nucleotides
MPMX20_00166: MPMX20_00166 - Xylulose kinase, at 172,472 to 173,926
_00166
MPMX20_00167: MPMX20_00167 - hypothetical protein, at 174,030 to 174,569
_00167
MPMX20_00168: MPMX20_00168 - HTH-type transcriptional regulator CdhR, at 174,569 to 175,489
_00168
MPMX20_00169: MPMX20_00169 - O-acetyltransferase WecH, at 175,482 to 176,477
_00169
Position (kb) 174
175 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7
8
9
10
11 at 173.103 kb on + strand, within MPMX20_00166 at 173.103 kb on + strand, within MPMX20_00166 at 173.111 kb on - strand, within MPMX20_00166 at 173.230 kb on + strand, within MPMX20_00166 at 173.255 kb on - strand, within MPMX20_00166 at 173.312 kb on - strand, within MPMX20_00166 at 173.340 kb on - strand, within MPMX20_00166 at 173.345 kb on - strand, within MPMX20_00166 at 173.361 kb on + strand, within MPMX20_00166 at 173.486 kb on + strand, within MPMX20_00166 at 173.486 kb on + strand, within MPMX20_00166 at 173.486 kb on + strand, within MPMX20_00166 at 173.554 kb on + strand, within MPMX20_00166 at 173.557 kb on - strand, within MPMX20_00166 at 173.587 kb on - strand, within MPMX20_00166 at 173.587 kb on - strand, within MPMX20_00166 at 173.598 kb on + strand, within MPMX20_00166 at 173.598 kb on + strand, within MPMX20_00166 at 173.609 kb on + strand, within MPMX20_00166 at 173.609 kb on + strand, within MPMX20_00166 at 173.617 kb on - strand, within MPMX20_00166 at 173.622 kb on + strand, within MPMX20_00166 at 173.640 kb on - strand, within MPMX20_00166 at 173.668 kb on - strand, within MPMX20_00166 at 173.732 kb on + strand, within MPMX20_00166 at 173.746 kb on + strand, within MPMX20_00166 at 173.746 kb on + strand, within MPMX20_00166 at 173.772 kb on - strand, within MPMX20_00166 at 173.820 kb on + strand at 173.834 kb on + strand at 173.874 kb on + strand at 173.945 kb on + strand at 173.946 kb on + strand at 173.979 kb on - strand at 174.000 kb on + strand at 174.000 kb on + strand at 174.002 kb on + strand at 174.112 kb on + strand, within MPMX20_00167 at 174.137 kb on + strand, within MPMX20_00167 at 174.137 kb on + strand, within MPMX20_00167 at 174.145 kb on - strand, within MPMX20_00167 at 174.197 kb on - strand, within MPMX20_00167 at 174.197 kb on - strand, within MPMX20_00167 at 174.197 kb on - strand, within MPMX20_00167 at 174.339 kb on - strand, within MPMX20_00167 at 174.339 kb on - strand, within MPMX20_00167 at 174.366 kb on + strand, within MPMX20_00167 at 174.366 kb on + strand, within MPMX20_00167 at 174.366 kb on + strand, within MPMX20_00167 at 174.366 kb on + strand, within MPMX20_00167 at 174.366 kb on + strand, within MPMX20_00167 at 174.392 kb on + strand, within MPMX20_00167 at 174.397 kb on + strand, within MPMX20_00167 at 174.405 kb on - strand, within MPMX20_00167 at 174.405 kb on - strand, within MPMX20_00167 at 174.407 kb on + strand, within MPMX20_00167 at 174.415 kb on - strand, within MPMX20_00167 at 174.415 kb on - strand, within MPMX20_00167 at 174.415 kb on - strand, within MPMX20_00167 at 174.415 kb on - strand, within MPMX20_00167 at 174.415 kb on - strand, within MPMX20_00167 at 174.422 kb on - strand, within MPMX20_00167 at 174.466 kb on + strand, within MPMX20_00167 at 174.564 kb on + strand at 174.624 kb on - strand at 174.635 kb on - strand at 174.670 kb on + strand, within MPMX20_00168 at 174.670 kb on + strand, within MPMX20_00168 at 174.715 kb on + strand, within MPMX20_00168 at 174.726 kb on + strand, within MPMX20_00168 at 174.734 kb on - strand, within MPMX20_00168 at 174.894 kb on + strand, within MPMX20_00168 at 174.902 kb on - strand, within MPMX20_00168 at 174.902 kb on - strand, within MPMX20_00168 at 174.902 kb on - strand, within MPMX20_00168 at 174.933 kb on + strand, within MPMX20_00168 at 174.943 kb on + strand, within MPMX20_00168 at 174.945 kb on + strand, within MPMX20_00168 at 174.951 kb on - strand, within MPMX20_00168 at 175.037 kb on + strand, within MPMX20_00168 at 175.045 kb on - strand, within MPMX20_00168 at 175.079 kb on - strand, within MPMX20_00168 at 175.079 kb on - strand, within MPMX20_00168 at 175.089 kb on - strand, within MPMX20_00168 at 175.155 kb on + strand, within MPMX20_00168 at 175.242 kb on + strand, within MPMX20_00168 at 175.259 kb on + strand, within MPMX20_00168 at 175.267 kb on - strand, within MPMX20_00168 at 175.267 kb on - strand, within MPMX20_00168 at 175.356 kb on + strand, within MPMX20_00168 at 175.356 kb on + strand, within MPMX20_00168 at 175.410 kb on + strand at 175.415 kb on + strand at 175.418 kb on - strand at 175.418 kb on - strand at 175.418 kb on - strand at 175.464 kb on - strand at 175.479 kb on + strand at 175.479 kb on + strand at 175.507 kb on + strand at 175.520 kb on + strand at 175.520 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 plate, Mixed culture; Bacillus zanthoxyli TBS_056 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct remove 173,103 + MPMX20_00166 0.43 +0.3 173,103 + MPMX20_00166 0.43 -1.2 173,111 - MPMX20_00166 0.44 +2.9 173,230 + MPMX20_00166 0.52 -0.9 173,255 - MPMX20_00166 0.54 -0.6 173,312 - MPMX20_00166 0.58 +1.6 173,340 - MPMX20_00166 0.60 -0.4 173,345 - MPMX20_00166 0.60 +0.5 173,361 + MPMX20_00166 0.61 -0.5 173,486 + MPMX20_00166 0.70 -1.5 173,486 + MPMX20_00166 0.70 -0.5 173,486 + MPMX20_00166 0.70 -0.3 173,554 + MPMX20_00166 0.74 -0.3 173,557 - MPMX20_00166 0.75 +1.9 173,587 - MPMX20_00166 0.77 -1.1 173,587 - MPMX20_00166 0.77 -0.4 173,598 + MPMX20_00166 0.77 -0.1 173,598 + MPMX20_00166 0.77 -0.9 173,609 + MPMX20_00166 0.78 -1.4 173,609 + MPMX20_00166 0.78 -1.4 173,617 - MPMX20_00166 0.79 -0.5 173,622 + MPMX20_00166 0.79 +1.9 173,640 - MPMX20_00166 0.80 +0.5 173,668 - MPMX20_00166 0.82 +0.5 173,732 + MPMX20_00166 0.87 -0.1 173,746 + MPMX20_00166 0.88 -1.4 173,746 + MPMX20_00166 0.88 -1.5 173,772 - MPMX20_00166 0.89 +0.9 173,820 + +0.3 173,834 + -0.9 173,874 + -0.8 173,945 + +0.2 173,946 + -0.9 173,979 - -1.0 174,000 + +1.9 174,000 + -0.6 174,002 + -0.4 174,112 + MPMX20_00167 0.15 +0.6 174,137 + MPMX20_00167 0.20 +10.8 174,137 + MPMX20_00167 0.20 -0.8 174,145 - MPMX20_00167 0.21 +0.9 174,197 - MPMX20_00167 0.31 +1.2 174,197 - MPMX20_00167 0.31 -1.5 174,197 - MPMX20_00167 0.31 +0.6 174,339 - MPMX20_00167 0.57 -0.6 174,339 - MPMX20_00167 0.57 +0.6 174,366 + MPMX20_00167 0.62 -1.4 174,366 + MPMX20_00167 0.62 +1.3 174,366 + MPMX20_00167 0.62 -0.7 174,366 + MPMX20_00167 0.62 +0.6 174,366 + MPMX20_00167 0.62 -0.6 174,392 + MPMX20_00167 0.67 -2.1 174,397 + MPMX20_00167 0.68 +1.3 174,405 - MPMX20_00167 0.69 -0.8 174,405 - MPMX20_00167 0.69 +1.3 174,407 + MPMX20_00167 0.70 -1.4 174,415 - MPMX20_00167 0.71 +1.3 174,415 - MPMX20_00167 0.71 -1.1 174,415 - MPMX20_00167 0.71 -0.9 174,415 - MPMX20_00167 0.71 -0.6 174,415 - MPMX20_00167 0.71 -0.9 174,422 - MPMX20_00167 0.73 +0.1 174,466 + MPMX20_00167 0.81 +0.6 174,564 + -0.0 174,624 - -0.8 174,635 - -1.1 174,670 + MPMX20_00168 0.11 -0.9 174,670 + MPMX20_00168 0.11 +0.4 174,715 + MPMX20_00168 0.16 +0.4 174,726 + MPMX20_00168 0.17 +0.3 174,734 - MPMX20_00168 0.18 +0.7 174,894 + MPMX20_00168 0.35 -1.6 174,902 - MPMX20_00168 0.36 -0.0 174,902 - MPMX20_00168 0.36 -1.4 174,902 - MPMX20_00168 0.36 -0.2 174,933 + MPMX20_00168 0.40 -0.7 174,943 + MPMX20_00168 0.41 +1.1 174,945 + MPMX20_00168 0.41 +1.3 174,951 - MPMX20_00168 0.41 -0.6 175,037 + MPMX20_00168 0.51 -0.3 175,045 - MPMX20_00168 0.52 -1.5 175,079 - MPMX20_00168 0.55 -0.4 175,079 - MPMX20_00168 0.55 -0.8 175,089 - MPMX20_00168 0.56 -2.5 175,155 + MPMX20_00168 0.64 -1.6 175,242 + MPMX20_00168 0.73 +0.2 175,259 + MPMX20_00168 0.75 -1.5 175,267 - MPMX20_00168 0.76 -1.1 175,267 - MPMX20_00168 0.76 -2.1 175,356 + MPMX20_00168 0.85 +0.2 175,356 + MPMX20_00168 0.85 -0.6 175,410 + -0.4 175,415 + -0.8 175,418 - +0.9 175,418 - -0.2 175,418 - -1.2 175,464 - -0.9 175,479 + +1.5 175,479 + -0.8 175,507 + -0.7 175,520 + -2.9 175,520 + -1.3
Or see this region's nucleotide sequence