Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03329

Experiment: 0.1X LB plate, Mixed culture; Bacillus zanthoxyli TBS_055 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_03327 and MPMX20_03328 are separated by 108 nucleotidesMPMX20_03328 and MPMX20_03329 are separated by 67 nucleotidesMPMX20_03329 and MPMX20_03330 are separated by 152 nucleotides MPMX20_03327: MPMX20_03327 - hypothetical protein, at 3,496,947 to 3,497,990 _03327 MPMX20_03328: MPMX20_03328 - GDP-mannose pyrophosphatase NudK, at 3,498,099 to 3,498,689 _03328 MPMX20_03329: MPMX20_03329 - Ferredoxin--NADP reductase, at 3,498,757 to 3,500,733 _03329 MPMX20_03330: MPMX20_03330 - Nitrate/nitrite sensor protein NarQ, at 3,500,886 to 3,502,580 _03330 Position (kb) 3498 3499 3500 3501Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 3497.797 kb on - strand, within MPMX20_03327at 3497.923 kb on + strandat 3497.929 kb on + strandat 3497.929 kb on + strandat 3497.937 kb on - strandat 3497.937 kb on - strandat 3497.937 kb on - strandat 3497.937 kb on - strandat 3497.937 kb on - strandat 3497.937 kb on - strandat 3497.937 kb on - strandat 3498.025 kb on + strandat 3498.112 kb on - strandat 3498.168 kb on - strand, within MPMX20_03328at 3498.174 kb on + strand, within MPMX20_03328at 3498.328 kb on + strand, within MPMX20_03328at 3498.328 kb on + strand, within MPMX20_03328at 3498.328 kb on + strand, within MPMX20_03328at 3498.336 kb on - strand, within MPMX20_03328at 3498.336 kb on - strand, within MPMX20_03328at 3498.365 kb on + strand, within MPMX20_03328at 3498.399 kb on + strand, within MPMX20_03328at 3498.469 kb on + strand, within MPMX20_03328at 3498.487 kb on + strand, within MPMX20_03328at 3498.495 kb on - strand, within MPMX20_03328at 3498.495 kb on - strand, within MPMX20_03328at 3498.495 kb on - strand, within MPMX20_03328at 3498.495 kb on - strand, within MPMX20_03328at 3498.506 kb on + strand, within MPMX20_03328at 3498.506 kb on + strand, within MPMX20_03328at 3498.514 kb on - strand, within MPMX20_03328at 3498.534 kb on - strand, within MPMX20_03328at 3498.561 kb on + strand, within MPMX20_03328at 3498.561 kb on + strand, within MPMX20_03328at 3498.561 kb on + strand, within MPMX20_03328at 3498.561 kb on + strand, within MPMX20_03328at 3498.561 kb on + strand, within MPMX20_03328at 3498.561 kb on + strand, within MPMX20_03328at 3498.569 kb on - strand, within MPMX20_03328at 3498.569 kb on - strand, within MPMX20_03328at 3498.569 kb on - strand, within MPMX20_03328at 3498.569 kb on - strand, within MPMX20_03328at 3498.569 kb on - strand, within MPMX20_03328at 3498.587 kb on + strand, within MPMX20_03328at 3498.632 kb on + strandat 3498.727 kb on - strandat 3498.788 kb on - strandat 3498.843 kb on + strandat 3498.851 kb on - strandat 3498.866 kb on - strandat 3498.897 kb on + strandat 3498.981 kb on - strand, within MPMX20_03329at 3499.063 kb on - strand, within MPMX20_03329at 3499.112 kb on + strand, within MPMX20_03329at 3499.112 kb on + strand, within MPMX20_03329at 3499.112 kb on + strand, within MPMX20_03329at 3499.120 kb on - strand, within MPMX20_03329at 3499.159 kb on - strand, within MPMX20_03329at 3499.273 kb on - strand, within MPMX20_03329at 3499.320 kb on + strand, within MPMX20_03329at 3499.340 kb on - strand, within MPMX20_03329at 3499.505 kb on + strand, within MPMX20_03329at 3499.530 kb on - strand, within MPMX20_03329at 3499.541 kb on + strand, within MPMX20_03329at 3499.544 kb on - strand, within MPMX20_03329at 3499.612 kb on - strand, within MPMX20_03329at 3499.614 kb on + strand, within MPMX20_03329at 3499.644 kb on - strand, within MPMX20_03329at 3499.742 kb on + strand, within MPMX20_03329at 3499.761 kb on - strand, within MPMX20_03329at 3499.809 kb on + strand, within MPMX20_03329at 3499.868 kb on + strand, within MPMX20_03329at 3499.868 kb on + strand, within MPMX20_03329at 3499.877 kb on - strand, within MPMX20_03329at 3499.928 kb on + strand, within MPMX20_03329at 3499.945 kb on + strand, within MPMX20_03329at 3499.963 kb on - strand, within MPMX20_03329at 3499.973 kb on + strand, within MPMX20_03329at 3500.030 kb on + strand, within MPMX20_03329at 3500.041 kb on - strand, within MPMX20_03329at 3500.059 kb on + strand, within MPMX20_03329at 3500.072 kb on + strand, within MPMX20_03329at 3500.072 kb on + strand, within MPMX20_03329at 3500.072 kb on + strand, within MPMX20_03329at 3500.077 kb on + strand, within MPMX20_03329at 3500.082 kb on + strand, within MPMX20_03329at 3500.163 kb on + strand, within MPMX20_03329at 3500.163 kb on + strand, within MPMX20_03329at 3500.166 kb on - strand, within MPMX20_03329at 3500.224 kb on + strand, within MPMX20_03329at 3500.228 kb on - strand, within MPMX20_03329at 3500.252 kb on - strand, within MPMX20_03329at 3500.300 kb on + strand, within MPMX20_03329at 3500.313 kb on + strand, within MPMX20_03329at 3500.356 kb on + strand, within MPMX20_03329at 3500.375 kb on - strand, within MPMX20_03329at 3500.468 kb on - strand, within MPMX20_03329at 3500.490 kb on + strand, within MPMX20_03329at 3500.496 kb on - strand, within MPMX20_03329at 3500.546 kb on - strandat 3500.546 kb on - strandat 3500.562 kb on + strandat 3500.562 kb on + strandat 3500.576 kb on + strandat 3500.578 kb on + strandat 3500.581 kb on + strandat 3500.584 kb on - strandat 3500.612 kb on - strandat 3500.684 kb on - strandat 3500.819 kb on - strandat 3500.849 kb on + strandat 3500.913 kb on + strandat 3500.921 kb on - strandat 3500.957 kb on + strandat 3500.957 kb on + strandat 3500.957 kb on + strandat 3500.960 kb on - strandat 3500.960 kb on - strandat 3500.962 kb on + strandat 3500.965 kb on + strandat 3500.965 kb on - strandat 3500.975 kb on + strandat 3500.983 kb on - strandat 3500.983 kb on - strandat 3501.036 kb on + strandat 3501.096 kb on + strand, within MPMX20_03330at 3501.123 kb on - strand, within MPMX20_03330at 3501.166 kb on + strand, within MPMX20_03330at 3501.221 kb on - strand, within MPMX20_03330at 3501.221 kb on - strand, within MPMX20_03330at 3501.238 kb on - strand, within MPMX20_03330at 3501.298 kb on + strand, within MPMX20_03330at 3501.306 kb on - strand, within MPMX20_03330at 3501.306 kb on - strand, within MPMX20_03330at 3501.308 kb on - strand, within MPMX20_03330at 3501.308 kb on - strand, within MPMX20_03330at 3501.308 kb on - strand, within MPMX20_03330at 3501.308 kb on - strand, within MPMX20_03330at 3501.308 kb on - strand, within MPMX20_03330at 3501.313 kb on - strand, within MPMX20_03330at 3501.358 kb on - strand, within MPMX20_03330at 3501.381 kb on + strand, within MPMX20_03330at 3501.381 kb on + strand, within MPMX20_03330at 3501.518 kb on + strand, within MPMX20_03330at 3501.554 kb on - strand, within MPMX20_03330at 3501.556 kb on - strand, within MPMX20_03330at 3501.610 kb on + strand, within MPMX20_03330at 3501.635 kb on + strand, within MPMX20_03330at 3501.658 kb on + strand, within MPMX20_03330at 3501.658 kb on + strand, within MPMX20_03330at 3501.666 kb on - strand, within MPMX20_03330

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 0.1X LB plate, Mixed culture; Bacillus zanthoxyli TBS_055 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
remove
3,497,797 - MPMX20_03327 0.81 -1.4
3,497,923 + +0.5
3,497,929 + -0.9
3,497,929 + -0.2
3,497,937 - +0.9
3,497,937 - -0.4
3,497,937 - -0.1
3,497,937 - -1.7
3,497,937 - -2.6
3,497,937 - +0.4
3,497,937 - -1.9
3,498,025 + -0.3
3,498,112 - +0.7
3,498,168 - MPMX20_03328 0.12 -0.9
3,498,174 + MPMX20_03328 0.13 -0.9
3,498,328 + MPMX20_03328 0.39 -0.2
3,498,328 + MPMX20_03328 0.39 +1.1
3,498,328 + MPMX20_03328 0.39 +0.1
3,498,336 - MPMX20_03328 0.40 +1.7
3,498,336 - MPMX20_03328 0.40 +1.7
3,498,365 + MPMX20_03328 0.45 +0.3
3,498,399 + MPMX20_03328 0.51 +0.3
3,498,469 + MPMX20_03328 0.63 -2.0
3,498,487 + MPMX20_03328 0.66 +0.1
3,498,495 - MPMX20_03328 0.67 -1.1
3,498,495 - MPMX20_03328 0.67 +0.4
3,498,495 - MPMX20_03328 0.67 -1.2
3,498,495 - MPMX20_03328 0.67 -0.6
3,498,506 + MPMX20_03328 0.69 +0.6
3,498,506 + MPMX20_03328 0.69 +1.3
3,498,514 - MPMX20_03328 0.70 +0.4
3,498,534 - MPMX20_03328 0.74 +0.7
3,498,561 + MPMX20_03328 0.78 -1.5
3,498,561 + MPMX20_03328 0.78 +0.8
3,498,561 + MPMX20_03328 0.78 +1.1
3,498,561 + MPMX20_03328 0.78 -1.1
3,498,561 + MPMX20_03328 0.78 +1.6
3,498,561 + MPMX20_03328 0.78 +0.1
3,498,569 - MPMX20_03328 0.80 +0.3
3,498,569 - MPMX20_03328 0.80 +0.5
3,498,569 - MPMX20_03328 0.80 +0.1
3,498,569 - MPMX20_03328 0.80 -1.0
3,498,569 - MPMX20_03328 0.80 -0.4
3,498,587 + MPMX20_03328 0.83 +1.7
3,498,632 + +0.3
3,498,727 - -0.1
3,498,788 - +0.5
3,498,843 + +0.7
3,498,851 - +1.4
3,498,866 - -0.4
3,498,897 + -0.3
3,498,981 - MPMX20_03329 0.11 -0.4
3,499,063 - MPMX20_03329 0.15 +0.9
3,499,112 + MPMX20_03329 0.18 -1.0
3,499,112 + MPMX20_03329 0.18 -0.2
3,499,112 + MPMX20_03329 0.18 +0.1
3,499,120 - MPMX20_03329 0.18 +0.1
3,499,159 - MPMX20_03329 0.20 +0.7
3,499,273 - MPMX20_03329 0.26 +0.5
3,499,320 + MPMX20_03329 0.28 -0.1
3,499,340 - MPMX20_03329 0.29 -0.4
3,499,505 + MPMX20_03329 0.38 -0.0
3,499,530 - MPMX20_03329 0.39 +0.4
3,499,541 + MPMX20_03329 0.40 -0.7
3,499,544 - MPMX20_03329 0.40 -0.4
3,499,612 - MPMX20_03329 0.43 -1.5
3,499,614 + MPMX20_03329 0.43 -1.7
3,499,644 - MPMX20_03329 0.45 +0.4
3,499,742 + MPMX20_03329 0.50 +0.7
3,499,761 - MPMX20_03329 0.51 +0.7
3,499,809 + MPMX20_03329 0.53 -0.1
3,499,868 + MPMX20_03329 0.56 +1.1
3,499,868 + MPMX20_03329 0.56 -0.9
3,499,877 - MPMX20_03329 0.57 -0.2
3,499,928 + MPMX20_03329 0.59 +1.7
3,499,945 + MPMX20_03329 0.60 +0.4
3,499,963 - MPMX20_03329 0.61 +0.1
3,499,973 + MPMX20_03329 0.62 -0.6
3,500,030 + MPMX20_03329 0.64 -0.8
3,500,041 - MPMX20_03329 0.65 +0.1
3,500,059 + MPMX20_03329 0.66 -0.4
3,500,072 + MPMX20_03329 0.67 +0.1
3,500,072 + MPMX20_03329 0.67 +0.6
3,500,072 + MPMX20_03329 0.67 -0.4
3,500,077 + MPMX20_03329 0.67 -2.4
3,500,082 + MPMX20_03329 0.67 -0.7
3,500,163 + MPMX20_03329 0.71 +0.1
3,500,163 + MPMX20_03329 0.71 +1.4
3,500,166 - MPMX20_03329 0.71 -0.2
3,500,224 + MPMX20_03329 0.74 -0.3
3,500,228 - MPMX20_03329 0.74 +0.4
3,500,252 - MPMX20_03329 0.76 -0.1
3,500,300 + MPMX20_03329 0.78 +0.6
3,500,313 + MPMX20_03329 0.79 -0.1
3,500,356 + MPMX20_03329 0.81 -0.3
3,500,375 - MPMX20_03329 0.82 +2.7
3,500,468 - MPMX20_03329 0.87 +1.5
3,500,490 + MPMX20_03329 0.88 +1.7
3,500,496 - MPMX20_03329 0.88 -0.1
3,500,546 - -0.4
3,500,546 - +0.4
3,500,562 + -1.9
3,500,562 + +0.7
3,500,576 + +2.1
3,500,578 + +1.6
3,500,581 + +2.7
3,500,584 - +0.1
3,500,612 - -0.4
3,500,684 - -0.4
3,500,819 - -0.3
3,500,849 + +1.6
3,500,913 + -3.2
3,500,921 - -0.3
3,500,957 + -1.2
3,500,957 + +1.1
3,500,957 + +2.0
3,500,960 - +0.0
3,500,960 - -0.2
3,500,962 + +0.1
3,500,965 + -1.5
3,500,965 - +0.3
3,500,975 + -0.7
3,500,983 - -0.6
3,500,983 - -0.6
3,501,036 + -0.5
3,501,096 + MPMX20_03330 0.12 -0.7
3,501,123 - MPMX20_03330 0.14 +0.5
3,501,166 + MPMX20_03330 0.17 +4.7
3,501,221 - MPMX20_03330 0.20 -1.3
3,501,221 - MPMX20_03330 0.20 -0.7
3,501,238 - MPMX20_03330 0.21 -1.6
3,501,298 + MPMX20_03330 0.24 -1.0
3,501,306 - MPMX20_03330 0.25 +1.1
3,501,306 - MPMX20_03330 0.25 -1.5
3,501,308 - MPMX20_03330 0.25 -0.9
3,501,308 - MPMX20_03330 0.25 +0.1
3,501,308 - MPMX20_03330 0.25 +0.2
3,501,308 - MPMX20_03330 0.25 +5.5
3,501,308 - MPMX20_03330 0.25 +0.7
3,501,313 - MPMX20_03330 0.25 +0.8
3,501,358 - MPMX20_03330 0.28 -1.8
3,501,381 + MPMX20_03330 0.29 -0.5
3,501,381 + MPMX20_03330 0.29 +0.6
3,501,518 + MPMX20_03330 0.37 -0.6
3,501,554 - MPMX20_03330 0.39 -1.3
3,501,556 - MPMX20_03330 0.40 -1.4
3,501,610 + MPMX20_03330 0.43 -1.1
3,501,635 + MPMX20_03330 0.44 +1.3
3,501,658 + MPMX20_03330 0.46 +2.1
3,501,658 + MPMX20_03330 0.46 -1.1
3,501,666 - MPMX20_03330 0.46 -0.6

Or see this region's nucleotide sequence