Experiment: 0.1X LB plate, Mixed culture; Bacillus zanthoxyli TBS_055 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03327 and MPMX20_03328 are separated by 108 nucleotides MPMX20_03328 and MPMX20_03329 are separated by 67 nucleotides MPMX20_03329 and MPMX20_03330 are separated by 152 nucleotides
MPMX20_03327: MPMX20_03327 - hypothetical protein, at 3,496,947 to 3,497,990
_03327
MPMX20_03328: MPMX20_03328 - GDP-mannose pyrophosphatase NudK, at 3,498,099 to 3,498,689
_03328
MPMX20_03329: MPMX20_03329 - Ferredoxin--NADP reductase, at 3,498,757 to 3,500,733
_03329
MPMX20_03330: MPMX20_03330 - Nitrate/nitrite sensor protein NarQ, at 3,500,886 to 3,502,580
_03330
Position (kb)
3498
3499
3500
3501 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5 at 3497.797 kb on - strand, within MPMX20_03327 at 3497.923 kb on + strand at 3497.929 kb on + strand at 3497.929 kb on + strand at 3497.937 kb on - strand at 3497.937 kb on - strand at 3497.937 kb on - strand at 3497.937 kb on - strand at 3497.937 kb on - strand at 3497.937 kb on - strand at 3497.937 kb on - strand at 3498.025 kb on + strand at 3498.112 kb on - strand at 3498.168 kb on - strand, within MPMX20_03328 at 3498.174 kb on + strand, within MPMX20_03328 at 3498.328 kb on + strand, within MPMX20_03328 at 3498.328 kb on + strand, within MPMX20_03328 at 3498.328 kb on + strand, within MPMX20_03328 at 3498.336 kb on - strand, within MPMX20_03328 at 3498.336 kb on - strand, within MPMX20_03328 at 3498.365 kb on + strand, within MPMX20_03328 at 3498.399 kb on + strand, within MPMX20_03328 at 3498.469 kb on + strand, within MPMX20_03328 at 3498.487 kb on + strand, within MPMX20_03328 at 3498.495 kb on - strand, within MPMX20_03328 at 3498.495 kb on - strand, within MPMX20_03328 at 3498.495 kb on - strand, within MPMX20_03328 at 3498.495 kb on - strand, within MPMX20_03328 at 3498.506 kb on + strand, within MPMX20_03328 at 3498.506 kb on + strand, within MPMX20_03328 at 3498.514 kb on - strand, within MPMX20_03328 at 3498.534 kb on - strand, within MPMX20_03328 at 3498.561 kb on + strand, within MPMX20_03328 at 3498.561 kb on + strand, within MPMX20_03328 at 3498.561 kb on + strand, within MPMX20_03328 at 3498.561 kb on + strand, within MPMX20_03328 at 3498.561 kb on + strand, within MPMX20_03328 at 3498.561 kb on + strand, within MPMX20_03328 at 3498.569 kb on - strand, within MPMX20_03328 at 3498.569 kb on - strand, within MPMX20_03328 at 3498.569 kb on - strand, within MPMX20_03328 at 3498.569 kb on - strand, within MPMX20_03328 at 3498.569 kb on - strand, within MPMX20_03328 at 3498.587 kb on + strand, within MPMX20_03328 at 3498.632 kb on + strand at 3498.727 kb on - strand at 3498.788 kb on - strand at 3498.843 kb on + strand at 3498.851 kb on - strand at 3498.866 kb on - strand at 3498.897 kb on + strand at 3498.981 kb on - strand, within MPMX20_03329 at 3499.063 kb on - strand, within MPMX20_03329 at 3499.112 kb on + strand, within MPMX20_03329 at 3499.112 kb on + strand, within MPMX20_03329 at 3499.112 kb on + strand, within MPMX20_03329 at 3499.120 kb on - strand, within MPMX20_03329 at 3499.159 kb on - strand, within MPMX20_03329 at 3499.273 kb on - strand, within MPMX20_03329 at 3499.320 kb on + strand, within MPMX20_03329 at 3499.340 kb on - strand, within MPMX20_03329 at 3499.505 kb on + strand, within MPMX20_03329 at 3499.530 kb on - strand, within MPMX20_03329 at 3499.541 kb on + strand, within MPMX20_03329 at 3499.544 kb on - strand, within MPMX20_03329 at 3499.612 kb on - strand, within MPMX20_03329 at 3499.614 kb on + strand, within MPMX20_03329 at 3499.644 kb on - strand, within MPMX20_03329 at 3499.742 kb on + strand, within MPMX20_03329 at 3499.761 kb on - strand, within MPMX20_03329 at 3499.809 kb on + strand, within MPMX20_03329 at 3499.868 kb on + strand, within MPMX20_03329 at 3499.868 kb on + strand, within MPMX20_03329 at 3499.877 kb on - strand, within MPMX20_03329 at 3499.928 kb on + strand, within MPMX20_03329 at 3499.945 kb on + strand, within MPMX20_03329 at 3499.963 kb on - strand, within MPMX20_03329 at 3499.973 kb on + strand, within MPMX20_03329 at 3500.030 kb on + strand, within MPMX20_03329 at 3500.041 kb on - strand, within MPMX20_03329 at 3500.059 kb on + strand, within MPMX20_03329 at 3500.072 kb on + strand, within MPMX20_03329 at 3500.072 kb on + strand, within MPMX20_03329 at 3500.072 kb on + strand, within MPMX20_03329 at 3500.077 kb on + strand, within MPMX20_03329 at 3500.082 kb on + strand, within MPMX20_03329 at 3500.163 kb on + strand, within MPMX20_03329 at 3500.163 kb on + strand, within MPMX20_03329 at 3500.166 kb on - strand, within MPMX20_03329 at 3500.224 kb on + strand, within MPMX20_03329 at 3500.228 kb on - strand, within MPMX20_03329 at 3500.252 kb on - strand, within MPMX20_03329 at 3500.300 kb on + strand, within MPMX20_03329 at 3500.313 kb on + strand, within MPMX20_03329 at 3500.356 kb on + strand, within MPMX20_03329 at 3500.375 kb on - strand, within MPMX20_03329 at 3500.468 kb on - strand, within MPMX20_03329 at 3500.490 kb on + strand, within MPMX20_03329 at 3500.496 kb on - strand, within MPMX20_03329 at 3500.546 kb on - strand at 3500.546 kb on - strand at 3500.562 kb on + strand at 3500.562 kb on + strand at 3500.576 kb on + strand at 3500.578 kb on + strand at 3500.581 kb on + strand at 3500.584 kb on - strand at 3500.612 kb on - strand at 3500.684 kb on - strand at 3500.819 kb on - strand at 3500.849 kb on + strand at 3500.913 kb on + strand at 3500.921 kb on - strand at 3500.957 kb on + strand at 3500.957 kb on + strand at 3500.957 kb on + strand at 3500.960 kb on - strand at 3500.960 kb on - strand at 3500.962 kb on + strand at 3500.965 kb on + strand at 3500.965 kb on - strand at 3500.975 kb on + strand at 3500.983 kb on - strand at 3500.983 kb on - strand at 3501.036 kb on + strand at 3501.096 kb on + strand, within MPMX20_03330 at 3501.123 kb on - strand, within MPMX20_03330 at 3501.166 kb on + strand, within MPMX20_03330 at 3501.221 kb on - strand, within MPMX20_03330 at 3501.221 kb on - strand, within MPMX20_03330 at 3501.238 kb on - strand, within MPMX20_03330 at 3501.298 kb on + strand, within MPMX20_03330 at 3501.306 kb on - strand, within MPMX20_03330 at 3501.306 kb on - strand, within MPMX20_03330 at 3501.308 kb on - strand, within MPMX20_03330 at 3501.308 kb on - strand, within MPMX20_03330 at 3501.308 kb on - strand, within MPMX20_03330 at 3501.308 kb on - strand, within MPMX20_03330 at 3501.308 kb on - strand, within MPMX20_03330 at 3501.313 kb on - strand, within MPMX20_03330 at 3501.358 kb on - strand, within MPMX20_03330 at 3501.381 kb on + strand, within MPMX20_03330 at 3501.381 kb on + strand, within MPMX20_03330 at 3501.518 kb on + strand, within MPMX20_03330 at 3501.554 kb on - strand, within MPMX20_03330 at 3501.556 kb on - strand, within MPMX20_03330 at 3501.610 kb on + strand, within MPMX20_03330 at 3501.635 kb on + strand, within MPMX20_03330 at 3501.658 kb on + strand, within MPMX20_03330 at 3501.658 kb on + strand, within MPMX20_03330 at 3501.666 kb on - strand, within MPMX20_03330
Per-strain Table
Position Strand Gene LocusTag Fraction 0.1X LB plate, Mixed culture; Bacillus zanthoxyli TBS_055 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct remove 3,497,797 - MPMX20_03327 0.81 -1.4 3,497,923 + +0.5 3,497,929 + -0.9 3,497,929 + -0.2 3,497,937 - +0.9 3,497,937 - -0.4 3,497,937 - -0.1 3,497,937 - -1.7 3,497,937 - -2.6 3,497,937 - +0.4 3,497,937 - -1.9 3,498,025 + -0.3 3,498,112 - +0.7 3,498,168 - MPMX20_03328 0.12 -0.9 3,498,174 + MPMX20_03328 0.13 -0.9 3,498,328 + MPMX20_03328 0.39 -0.2 3,498,328 + MPMX20_03328 0.39 +1.1 3,498,328 + MPMX20_03328 0.39 +0.1 3,498,336 - MPMX20_03328 0.40 +1.7 3,498,336 - MPMX20_03328 0.40 +1.7 3,498,365 + MPMX20_03328 0.45 +0.3 3,498,399 + MPMX20_03328 0.51 +0.3 3,498,469 + MPMX20_03328 0.63 -2.0 3,498,487 + MPMX20_03328 0.66 +0.1 3,498,495 - MPMX20_03328 0.67 -1.1 3,498,495 - MPMX20_03328 0.67 +0.4 3,498,495 - MPMX20_03328 0.67 -1.2 3,498,495 - MPMX20_03328 0.67 -0.6 3,498,506 + MPMX20_03328 0.69 +0.6 3,498,506 + MPMX20_03328 0.69 +1.3 3,498,514 - MPMX20_03328 0.70 +0.4 3,498,534 - MPMX20_03328 0.74 +0.7 3,498,561 + MPMX20_03328 0.78 -1.5 3,498,561 + MPMX20_03328 0.78 +0.8 3,498,561 + MPMX20_03328 0.78 +1.1 3,498,561 + MPMX20_03328 0.78 -1.1 3,498,561 + MPMX20_03328 0.78 +1.6 3,498,561 + MPMX20_03328 0.78 +0.1 3,498,569 - MPMX20_03328 0.80 +0.3 3,498,569 - MPMX20_03328 0.80 +0.5 3,498,569 - MPMX20_03328 0.80 +0.1 3,498,569 - MPMX20_03328 0.80 -1.0 3,498,569 - MPMX20_03328 0.80 -0.4 3,498,587 + MPMX20_03328 0.83 +1.7 3,498,632 + +0.3 3,498,727 - -0.1 3,498,788 - +0.5 3,498,843 + +0.7 3,498,851 - +1.4 3,498,866 - -0.4 3,498,897 + -0.3 3,498,981 - MPMX20_03329 0.11 -0.4 3,499,063 - MPMX20_03329 0.15 +0.9 3,499,112 + MPMX20_03329 0.18 -1.0 3,499,112 + MPMX20_03329 0.18 -0.2 3,499,112 + MPMX20_03329 0.18 +0.1 3,499,120 - MPMX20_03329 0.18 +0.1 3,499,159 - MPMX20_03329 0.20 +0.7 3,499,273 - MPMX20_03329 0.26 +0.5 3,499,320 + MPMX20_03329 0.28 -0.1 3,499,340 - MPMX20_03329 0.29 -0.4 3,499,505 + MPMX20_03329 0.38 -0.0 3,499,530 - MPMX20_03329 0.39 +0.4 3,499,541 + MPMX20_03329 0.40 -0.7 3,499,544 - MPMX20_03329 0.40 -0.4 3,499,612 - MPMX20_03329 0.43 -1.5 3,499,614 + MPMX20_03329 0.43 -1.7 3,499,644 - MPMX20_03329 0.45 +0.4 3,499,742 + MPMX20_03329 0.50 +0.7 3,499,761 - MPMX20_03329 0.51 +0.7 3,499,809 + MPMX20_03329 0.53 -0.1 3,499,868 + MPMX20_03329 0.56 +1.1 3,499,868 + MPMX20_03329 0.56 -0.9 3,499,877 - MPMX20_03329 0.57 -0.2 3,499,928 + MPMX20_03329 0.59 +1.7 3,499,945 + MPMX20_03329 0.60 +0.4 3,499,963 - MPMX20_03329 0.61 +0.1 3,499,973 + MPMX20_03329 0.62 -0.6 3,500,030 + MPMX20_03329 0.64 -0.8 3,500,041 - MPMX20_03329 0.65 +0.1 3,500,059 + MPMX20_03329 0.66 -0.4 3,500,072 + MPMX20_03329 0.67 +0.1 3,500,072 + MPMX20_03329 0.67 +0.6 3,500,072 + MPMX20_03329 0.67 -0.4 3,500,077 + MPMX20_03329 0.67 -2.4 3,500,082 + MPMX20_03329 0.67 -0.7 3,500,163 + MPMX20_03329 0.71 +0.1 3,500,163 + MPMX20_03329 0.71 +1.4 3,500,166 - MPMX20_03329 0.71 -0.2 3,500,224 + MPMX20_03329 0.74 -0.3 3,500,228 - MPMX20_03329 0.74 +0.4 3,500,252 - MPMX20_03329 0.76 -0.1 3,500,300 + MPMX20_03329 0.78 +0.6 3,500,313 + MPMX20_03329 0.79 -0.1 3,500,356 + MPMX20_03329 0.81 -0.3 3,500,375 - MPMX20_03329 0.82 +2.7 3,500,468 - MPMX20_03329 0.87 +1.5 3,500,490 + MPMX20_03329 0.88 +1.7 3,500,496 - MPMX20_03329 0.88 -0.1 3,500,546 - -0.4 3,500,546 - +0.4 3,500,562 + -1.9 3,500,562 + +0.7 3,500,576 + +2.1 3,500,578 + +1.6 3,500,581 + +2.7 3,500,584 - +0.1 3,500,612 - -0.4 3,500,684 - -0.4 3,500,819 - -0.3 3,500,849 + +1.6 3,500,913 + -3.2 3,500,921 - -0.3 3,500,957 + -1.2 3,500,957 + +1.1 3,500,957 + +2.0 3,500,960 - +0.0 3,500,960 - -0.2 3,500,962 + +0.1 3,500,965 + -1.5 3,500,965 - +0.3 3,500,975 + -0.7 3,500,983 - -0.6 3,500,983 - -0.6 3,501,036 + -0.5 3,501,096 + MPMX20_03330 0.12 -0.7 3,501,123 - MPMX20_03330 0.14 +0.5 3,501,166 + MPMX20_03330 0.17 +4.7 3,501,221 - MPMX20_03330 0.20 -1.3 3,501,221 - MPMX20_03330 0.20 -0.7 3,501,238 - MPMX20_03330 0.21 -1.6 3,501,298 + MPMX20_03330 0.24 -1.0 3,501,306 - MPMX20_03330 0.25 +1.1 3,501,306 - MPMX20_03330 0.25 -1.5 3,501,308 - MPMX20_03330 0.25 -0.9 3,501,308 - MPMX20_03330 0.25 +0.1 3,501,308 - MPMX20_03330 0.25 +0.2 3,501,308 - MPMX20_03330 0.25 +5.5 3,501,308 - MPMX20_03330 0.25 +0.7 3,501,313 - MPMX20_03330 0.25 +0.8 3,501,358 - MPMX20_03330 0.28 -1.8 3,501,381 + MPMX20_03330 0.29 -0.5 3,501,381 + MPMX20_03330 0.29 +0.6 3,501,518 + MPMX20_03330 0.37 -0.6 3,501,554 - MPMX20_03330 0.39 -1.3 3,501,556 - MPMX20_03330 0.40 -1.4 3,501,610 + MPMX20_03330 0.43 -1.1 3,501,635 + MPMX20_03330 0.44 +1.3 3,501,658 + MPMX20_03330 0.46 +2.1 3,501,658 + MPMX20_03330 0.46 -1.1 3,501,666 - MPMX20_03330 0.46 -0.6
Or see this region's nucleotide sequence