Experiment: 0.1X LB plate, Mixed culture; Bacillus zanthoxyli TBS_055 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03279 and MPMX20_03280 are separated by 13 nucleotides MPMX20_03280 and MPMX20_03281 are separated by 32 nucleotides
MPMX20_03279: MPMX20_03279 - Sensor histidine kinase YpdA, at 3,450,289 to 3,451,968
_03279
MPMX20_03280: MPMX20_03280 - Transcriptional regulatory protein YpdB, at 3,451,982 to 3,452,713
_03280
MPMX20_03281: MPMX20_03281 - Glucokinase, at 3,452,746 to 3,453,711
_03281
Position (kb)
3451
3452
3453 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5
6 at 3451.029 kb on + strand, within MPMX20_03279 at 3451.029 kb on + strand, within MPMX20_03279 at 3451.076 kb on + strand, within MPMX20_03279 at 3451.091 kb on + strand, within MPMX20_03279 at 3451.237 kb on + strand, within MPMX20_03279 at 3451.245 kb on - strand, within MPMX20_03279 at 3451.255 kb on - strand, within MPMX20_03279 at 3451.263 kb on - strand, within MPMX20_03279 at 3451.263 kb on - strand, within MPMX20_03279 at 3451.284 kb on + strand, within MPMX20_03279 at 3451.286 kb on - strand, within MPMX20_03279 at 3451.292 kb on - strand, within MPMX20_03279 at 3451.292 kb on - strand, within MPMX20_03279 at 3451.318 kb on + strand, within MPMX20_03279 at 3451.343 kb on + strand, within MPMX20_03279 at 3451.358 kb on + strand, within MPMX20_03279 at 3451.360 kb on + strand, within MPMX20_03279 at 3451.368 kb on - strand, within MPMX20_03279 at 3451.429 kb on + strand, within MPMX20_03279 at 3451.437 kb on - strand, within MPMX20_03279 at 3451.437 kb on - strand, within MPMX20_03279 at 3451.453 kb on + strand, within MPMX20_03279 at 3451.484 kb on + strand, within MPMX20_03279 at 3451.484 kb on + strand, within MPMX20_03279 at 3451.487 kb on - strand, within MPMX20_03279 at 3451.492 kb on - strand, within MPMX20_03279 at 3451.492 kb on - strand, within MPMX20_03279 at 3451.492 kb on - strand, within MPMX20_03279 at 3451.497 kb on - strand, within MPMX20_03279 at 3451.502 kb on - strand, within MPMX20_03279 at 3451.507 kb on - strand, within MPMX20_03279 at 3451.542 kb on + strand, within MPMX20_03279 at 3451.567 kb on + strand, within MPMX20_03279 at 3451.571 kb on - strand, within MPMX20_03279 at 3451.589 kb on - strand, within MPMX20_03279 at 3451.589 kb on - strand, within MPMX20_03279 at 3451.617 kb on - strand, within MPMX20_03279 at 3451.619 kb on - strand, within MPMX20_03279 at 3451.625 kb on + strand, within MPMX20_03279 at 3451.625 kb on + strand, within MPMX20_03279 at 3451.631 kb on - strand, within MPMX20_03279 at 3451.633 kb on - strand, within MPMX20_03279 at 3451.666 kb on + strand, within MPMX20_03279 at 3451.673 kb on + strand, within MPMX20_03279 at 3451.681 kb on - strand, within MPMX20_03279 at 3451.697 kb on - strand, within MPMX20_03279 at 3451.698 kb on - strand, within MPMX20_03279 at 3451.698 kb on - strand, within MPMX20_03279 at 3451.702 kb on + strand, within MPMX20_03279 at 3451.712 kb on + strand, within MPMX20_03279 at 3451.733 kb on - strand, within MPMX20_03279 at 3451.791 kb on + strand, within MPMX20_03279 at 3451.797 kb on + strand, within MPMX20_03279 at 3451.805 kb on - strand at 3451.820 kb on + strand at 3451.830 kb on + strand at 3451.836 kb on - strand at 3451.848 kb on + strand at 3451.963 kb on + strand at 3452.029 kb on + strand at 3452.081 kb on - strand, within MPMX20_03280 at 3452.081 kb on - strand, within MPMX20_03280 at 3452.084 kb on + strand, within MPMX20_03280 at 3452.085 kb on + strand, within MPMX20_03280 at 3452.085 kb on + strand, within MPMX20_03280 at 3452.085 kb on + strand, within MPMX20_03280 at 3452.085 kb on + strand, within MPMX20_03280 at 3452.092 kb on - strand, within MPMX20_03280 at 3452.092 kb on - strand, within MPMX20_03280 at 3452.092 kb on - strand, within MPMX20_03280 at 3452.092 kb on - strand, within MPMX20_03280 at 3452.093 kb on - strand, within MPMX20_03280 at 3452.093 kb on - strand, within MPMX20_03280 at 3452.093 kb on - strand, within MPMX20_03280 at 3452.163 kb on + strand, within MPMX20_03280 at 3452.171 kb on - strand, within MPMX20_03280 at 3452.249 kb on - strand, within MPMX20_03280 at 3452.251 kb on - strand, within MPMX20_03280 at 3452.251 kb on - strand, within MPMX20_03280 at 3452.323 kb on + strand, within MPMX20_03280 at 3452.355 kb on - strand, within MPMX20_03280 at 3452.355 kb on - strand, within MPMX20_03280 at 3452.391 kb on + strand, within MPMX20_03280 at 3452.391 kb on + strand, within MPMX20_03280 at 3452.399 kb on - strand, within MPMX20_03280 at 3452.399 kb on - strand, within MPMX20_03280 at 3452.399 kb on - strand, within MPMX20_03280 at 3452.399 kb on - strand, within MPMX20_03280 at 3452.759 kb on - strand at 3452.783 kb on - strand at 3452.783 kb on - strand at 3452.796 kb on + strand at 3452.796 kb on + strand at 3452.801 kb on + strand at 3452.809 kb on - strand at 3452.828 kb on + strand at 3452.833 kb on + strand at 3452.892 kb on - strand, within MPMX20_03281 at 3452.892 kb on - strand, within MPMX20_03281 at 3452.942 kb on + strand, within MPMX20_03281 at 3452.953 kb on + strand, within MPMX20_03281 at 3453.045 kb on - strand, within MPMX20_03281 at 3453.124 kb on + strand, within MPMX20_03281 at 3453.204 kb on + strand, within MPMX20_03281 at 3453.226 kb on + strand, within MPMX20_03281 at 3453.252 kb on + strand, within MPMX20_03281 at 3453.252 kb on + strand, within MPMX20_03281 at 3453.257 kb on + strand, within MPMX20_03281 at 3453.260 kb on - strand, within MPMX20_03281 at 3453.283 kb on + strand, within MPMX20_03281 at 3453.285 kb on - strand, within MPMX20_03281 at 3453.500 kb on - strand, within MPMX20_03281 at 3453.501 kb on + strand, within MPMX20_03281 at 3453.503 kb on - strand, within MPMX20_03281 at 3453.547 kb on + strand, within MPMX20_03281 at 3453.558 kb on - strand, within MPMX20_03281 at 3453.561 kb on + strand, within MPMX20_03281 at 3453.571 kb on + strand, within MPMX20_03281 at 3453.571 kb on + strand, within MPMX20_03281 at 3453.579 kb on - strand, within MPMX20_03281 at 3453.585 kb on + strand, within MPMX20_03281 at 3453.596 kb on + strand, within MPMX20_03281 at 3453.609 kb on - strand, within MPMX20_03281 at 3453.657 kb on + strand at 3453.660 kb on - strand at 3453.660 kb on - strand at 3453.660 kb on - strand at 3453.696 kb on + strand at 3453.713 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 0.1X LB plate, Mixed culture; Bacillus zanthoxyli TBS_055 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct remove 3,451,029 + MPMX20_03279 0.44 -1.3 3,451,029 + MPMX20_03279 0.44 +1.1 3,451,076 + MPMX20_03279 0.47 +0.3 3,451,091 + MPMX20_03279 0.48 +0.1 3,451,237 + MPMX20_03279 0.56 +3.3 3,451,245 - MPMX20_03279 0.57 -1.4 3,451,255 - MPMX20_03279 0.57 -0.3 3,451,263 - MPMX20_03279 0.58 -1.5 3,451,263 - MPMX20_03279 0.58 +0.4 3,451,284 + MPMX20_03279 0.59 -0.3 3,451,286 - MPMX20_03279 0.59 +0.4 3,451,292 - MPMX20_03279 0.60 +1.7 3,451,292 - MPMX20_03279 0.60 +0.5 3,451,318 + MPMX20_03279 0.61 -1.8 3,451,343 + MPMX20_03279 0.63 +0.5 3,451,358 + MPMX20_03279 0.64 -0.9 3,451,360 + MPMX20_03279 0.64 -1.2 3,451,368 - MPMX20_03279 0.64 -1.2 3,451,429 + MPMX20_03279 0.68 +0.1 3,451,437 - MPMX20_03279 0.68 +2.1 3,451,437 - MPMX20_03279 0.68 -0.8 3,451,453 + MPMX20_03279 0.69 +0.7 3,451,484 + MPMX20_03279 0.71 -1.5 3,451,484 + MPMX20_03279 0.71 -1.8 3,451,487 - MPMX20_03279 0.71 -0.3 3,451,492 - MPMX20_03279 0.72 +0.2 3,451,492 - MPMX20_03279 0.72 -0.3 3,451,492 - MPMX20_03279 0.72 +0.7 3,451,497 - MPMX20_03279 0.72 +0.1 3,451,502 - MPMX20_03279 0.72 +0.2 3,451,507 - MPMX20_03279 0.72 -0.7 3,451,542 + MPMX20_03279 0.75 +1.1 3,451,567 + MPMX20_03279 0.76 +0.2 3,451,571 - MPMX20_03279 0.76 -0.1 3,451,589 - MPMX20_03279 0.77 -0.2 3,451,589 - MPMX20_03279 0.77 +1.1 3,451,617 - MPMX20_03279 0.79 +1.1 3,451,619 - MPMX20_03279 0.79 +0.1 3,451,625 + MPMX20_03279 0.80 +0.2 3,451,625 + MPMX20_03279 0.80 -1.4 3,451,631 - MPMX20_03279 0.80 +1.9 3,451,633 - MPMX20_03279 0.80 +0.5 3,451,666 + MPMX20_03279 0.82 -1.0 3,451,673 + MPMX20_03279 0.82 -0.9 3,451,681 - MPMX20_03279 0.83 -0.3 3,451,697 - MPMX20_03279 0.84 +0.5 3,451,698 - MPMX20_03279 0.84 +0.4 3,451,698 - MPMX20_03279 0.84 -0.3 3,451,702 + MPMX20_03279 0.84 -0.1 3,451,712 + MPMX20_03279 0.85 +1.7 3,451,733 - MPMX20_03279 0.86 -0.5 3,451,791 + MPMX20_03279 0.89 -0.8 3,451,797 + MPMX20_03279 0.90 -0.7 3,451,805 - +0.4 3,451,820 + +0.2 3,451,830 + +1.5 3,451,836 - -0.9 3,451,848 + -0.7 3,451,963 + -0.2 3,452,029 + +0.0 3,452,081 - MPMX20_03280 0.14 -0.8 3,452,081 - MPMX20_03280 0.14 +0.0 3,452,084 + MPMX20_03280 0.14 -1.2 3,452,085 + MPMX20_03280 0.14 -0.0 3,452,085 + MPMX20_03280 0.14 -0.2 3,452,085 + MPMX20_03280 0.14 +0.0 3,452,085 + MPMX20_03280 0.14 -0.4 3,452,092 - MPMX20_03280 0.15 +0.9 3,452,092 - MPMX20_03280 0.15 +1.7 3,452,092 - MPMX20_03280 0.15 +0.4 3,452,092 - MPMX20_03280 0.15 -0.4 3,452,093 - MPMX20_03280 0.15 -0.3 3,452,093 - MPMX20_03280 0.15 -0.5 3,452,093 - MPMX20_03280 0.15 +0.1 3,452,163 + MPMX20_03280 0.25 +0.3 3,452,171 - MPMX20_03280 0.26 -0.7 3,452,249 - MPMX20_03280 0.36 +0.2 3,452,251 - MPMX20_03280 0.37 -0.3 3,452,251 - MPMX20_03280 0.37 -0.3 3,452,323 + MPMX20_03280 0.47 +0.4 3,452,355 - MPMX20_03280 0.51 +1.2 3,452,355 - MPMX20_03280 0.51 -0.8 3,452,391 + MPMX20_03280 0.56 -0.0 3,452,391 + MPMX20_03280 0.56 +0.2 3,452,399 - MPMX20_03280 0.57 +2.1 3,452,399 - MPMX20_03280 0.57 -0.6 3,452,399 - MPMX20_03280 0.57 -1.7 3,452,399 - MPMX20_03280 0.57 -0.9 3,452,759 - -1.1 3,452,783 - -0.5 3,452,783 - +0.7 3,452,796 + -0.8 3,452,796 + -0.5 3,452,801 + -0.1 3,452,809 - +0.2 3,452,828 + +0.3 3,452,833 + -1.1 3,452,892 - MPMX20_03281 0.15 +0.1 3,452,892 - MPMX20_03281 0.15 -2.5 3,452,942 + MPMX20_03281 0.20 +1.7 3,452,953 + MPMX20_03281 0.21 +0.1 3,453,045 - MPMX20_03281 0.31 +1.1 3,453,124 + MPMX20_03281 0.39 -0.0 3,453,204 + MPMX20_03281 0.47 +0.3 3,453,226 + MPMX20_03281 0.50 +0.5 3,453,252 + MPMX20_03281 0.52 +1.9 3,453,252 + MPMX20_03281 0.52 -2.5 3,453,257 + MPMX20_03281 0.53 +1.6 3,453,260 - MPMX20_03281 0.53 +0.4 3,453,283 + MPMX20_03281 0.56 -2.5 3,453,285 - MPMX20_03281 0.56 +2.2 3,453,500 - MPMX20_03281 0.78 +0.8 3,453,501 + MPMX20_03281 0.78 +0.1 3,453,503 - MPMX20_03281 0.78 +0.5 3,453,547 + MPMX20_03281 0.83 +0.4 3,453,558 - MPMX20_03281 0.84 -0.1 3,453,561 + MPMX20_03281 0.84 +1.1 3,453,571 + MPMX20_03281 0.85 -0.1 3,453,571 + MPMX20_03281 0.85 -0.4 3,453,579 - MPMX20_03281 0.86 -0.4 3,453,585 + MPMX20_03281 0.87 +0.7 3,453,596 + MPMX20_03281 0.88 +0.8 3,453,609 - MPMX20_03281 0.89 +0.3 3,453,657 + -0.9 3,453,660 - -1.4 3,453,660 - +0.0 3,453,660 - +1.1 3,453,696 + +6.7 3,453,713 + +1.3
Or see this region's nucleotide sequence