Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03280

Experiment: 0.1X LB plate, Mixed culture; Bacillus zanthoxyli TBS_055 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_03279 and MPMX20_03280 are separated by 13 nucleotidesMPMX20_03280 and MPMX20_03281 are separated by 32 nucleotides MPMX20_03279: MPMX20_03279 - Sensor histidine kinase YpdA, at 3,450,289 to 3,451,968 _03279 MPMX20_03280: MPMX20_03280 - Transcriptional regulatory protein YpdB, at 3,451,982 to 3,452,713 _03280 MPMX20_03281: MPMX20_03281 - Glucokinase, at 3,452,746 to 3,453,711 _03281 Position (kb) 3451 3452 3453Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6at 3451.029 kb on + strand, within MPMX20_03279at 3451.029 kb on + strand, within MPMX20_03279at 3451.076 kb on + strand, within MPMX20_03279at 3451.091 kb on + strand, within MPMX20_03279at 3451.237 kb on + strand, within MPMX20_03279at 3451.245 kb on - strand, within MPMX20_03279at 3451.255 kb on - strand, within MPMX20_03279at 3451.263 kb on - strand, within MPMX20_03279at 3451.263 kb on - strand, within MPMX20_03279at 3451.284 kb on + strand, within MPMX20_03279at 3451.286 kb on - strand, within MPMX20_03279at 3451.292 kb on - strand, within MPMX20_03279at 3451.292 kb on - strand, within MPMX20_03279at 3451.318 kb on + strand, within MPMX20_03279at 3451.343 kb on + strand, within MPMX20_03279at 3451.358 kb on + strand, within MPMX20_03279at 3451.360 kb on + strand, within MPMX20_03279at 3451.368 kb on - strand, within MPMX20_03279at 3451.429 kb on + strand, within MPMX20_03279at 3451.437 kb on - strand, within MPMX20_03279at 3451.437 kb on - strand, within MPMX20_03279at 3451.453 kb on + strand, within MPMX20_03279at 3451.484 kb on + strand, within MPMX20_03279at 3451.484 kb on + strand, within MPMX20_03279at 3451.487 kb on - strand, within MPMX20_03279at 3451.492 kb on - strand, within MPMX20_03279at 3451.492 kb on - strand, within MPMX20_03279at 3451.492 kb on - strand, within MPMX20_03279at 3451.497 kb on - strand, within MPMX20_03279at 3451.502 kb on - strand, within MPMX20_03279at 3451.507 kb on - strand, within MPMX20_03279at 3451.542 kb on + strand, within MPMX20_03279at 3451.567 kb on + strand, within MPMX20_03279at 3451.571 kb on - strand, within MPMX20_03279at 3451.589 kb on - strand, within MPMX20_03279at 3451.589 kb on - strand, within MPMX20_03279at 3451.617 kb on - strand, within MPMX20_03279at 3451.619 kb on - strand, within MPMX20_03279at 3451.625 kb on + strand, within MPMX20_03279at 3451.625 kb on + strand, within MPMX20_03279at 3451.631 kb on - strand, within MPMX20_03279at 3451.633 kb on - strand, within MPMX20_03279at 3451.666 kb on + strand, within MPMX20_03279at 3451.673 kb on + strand, within MPMX20_03279at 3451.681 kb on - strand, within MPMX20_03279at 3451.697 kb on - strand, within MPMX20_03279at 3451.698 kb on - strand, within MPMX20_03279at 3451.698 kb on - strand, within MPMX20_03279at 3451.702 kb on + strand, within MPMX20_03279at 3451.712 kb on + strand, within MPMX20_03279at 3451.733 kb on - strand, within MPMX20_03279at 3451.791 kb on + strand, within MPMX20_03279at 3451.797 kb on + strand, within MPMX20_03279at 3451.805 kb on - strandat 3451.820 kb on + strandat 3451.830 kb on + strandat 3451.836 kb on - strandat 3451.848 kb on + strandat 3451.963 kb on + strandat 3452.029 kb on + strandat 3452.081 kb on - strand, within MPMX20_03280at 3452.081 kb on - strand, within MPMX20_03280at 3452.084 kb on + strand, within MPMX20_03280at 3452.085 kb on + strand, within MPMX20_03280at 3452.085 kb on + strand, within MPMX20_03280at 3452.085 kb on + strand, within MPMX20_03280at 3452.085 kb on + strand, within MPMX20_03280at 3452.092 kb on - strand, within MPMX20_03280at 3452.092 kb on - strand, within MPMX20_03280at 3452.092 kb on - strand, within MPMX20_03280at 3452.092 kb on - strand, within MPMX20_03280at 3452.093 kb on - strand, within MPMX20_03280at 3452.093 kb on - strand, within MPMX20_03280at 3452.093 kb on - strand, within MPMX20_03280at 3452.163 kb on + strand, within MPMX20_03280at 3452.171 kb on - strand, within MPMX20_03280at 3452.249 kb on - strand, within MPMX20_03280at 3452.251 kb on - strand, within MPMX20_03280at 3452.251 kb on - strand, within MPMX20_03280at 3452.323 kb on + strand, within MPMX20_03280at 3452.355 kb on - strand, within MPMX20_03280at 3452.355 kb on - strand, within MPMX20_03280at 3452.391 kb on + strand, within MPMX20_03280at 3452.391 kb on + strand, within MPMX20_03280at 3452.399 kb on - strand, within MPMX20_03280at 3452.399 kb on - strand, within MPMX20_03280at 3452.399 kb on - strand, within MPMX20_03280at 3452.399 kb on - strand, within MPMX20_03280at 3452.759 kb on - strandat 3452.783 kb on - strandat 3452.783 kb on - strandat 3452.796 kb on + strandat 3452.796 kb on + strandat 3452.801 kb on + strandat 3452.809 kb on - strandat 3452.828 kb on + strandat 3452.833 kb on + strandat 3452.892 kb on - strand, within MPMX20_03281at 3452.892 kb on - strand, within MPMX20_03281at 3452.942 kb on + strand, within MPMX20_03281at 3452.953 kb on + strand, within MPMX20_03281at 3453.045 kb on - strand, within MPMX20_03281at 3453.124 kb on + strand, within MPMX20_03281at 3453.204 kb on + strand, within MPMX20_03281at 3453.226 kb on + strand, within MPMX20_03281at 3453.252 kb on + strand, within MPMX20_03281at 3453.252 kb on + strand, within MPMX20_03281at 3453.257 kb on + strand, within MPMX20_03281at 3453.260 kb on - strand, within MPMX20_03281at 3453.283 kb on + strand, within MPMX20_03281at 3453.285 kb on - strand, within MPMX20_03281at 3453.500 kb on - strand, within MPMX20_03281at 3453.501 kb on + strand, within MPMX20_03281at 3453.503 kb on - strand, within MPMX20_03281at 3453.547 kb on + strand, within MPMX20_03281at 3453.558 kb on - strand, within MPMX20_03281at 3453.561 kb on + strand, within MPMX20_03281at 3453.571 kb on + strand, within MPMX20_03281at 3453.571 kb on + strand, within MPMX20_03281at 3453.579 kb on - strand, within MPMX20_03281at 3453.585 kb on + strand, within MPMX20_03281at 3453.596 kb on + strand, within MPMX20_03281at 3453.609 kb on - strand, within MPMX20_03281at 3453.657 kb on + strandat 3453.660 kb on - strandat 3453.660 kb on - strandat 3453.660 kb on - strandat 3453.696 kb on + strandat 3453.713 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 0.1X LB plate, Mixed culture; Bacillus zanthoxyli TBS_055 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
remove
3,451,029 + MPMX20_03279 0.44 -1.3
3,451,029 + MPMX20_03279 0.44 +1.1
3,451,076 + MPMX20_03279 0.47 +0.3
3,451,091 + MPMX20_03279 0.48 +0.1
3,451,237 + MPMX20_03279 0.56 +3.3
3,451,245 - MPMX20_03279 0.57 -1.4
3,451,255 - MPMX20_03279 0.57 -0.3
3,451,263 - MPMX20_03279 0.58 -1.5
3,451,263 - MPMX20_03279 0.58 +0.4
3,451,284 + MPMX20_03279 0.59 -0.3
3,451,286 - MPMX20_03279 0.59 +0.4
3,451,292 - MPMX20_03279 0.60 +1.7
3,451,292 - MPMX20_03279 0.60 +0.5
3,451,318 + MPMX20_03279 0.61 -1.8
3,451,343 + MPMX20_03279 0.63 +0.5
3,451,358 + MPMX20_03279 0.64 -0.9
3,451,360 + MPMX20_03279 0.64 -1.2
3,451,368 - MPMX20_03279 0.64 -1.2
3,451,429 + MPMX20_03279 0.68 +0.1
3,451,437 - MPMX20_03279 0.68 +2.1
3,451,437 - MPMX20_03279 0.68 -0.8
3,451,453 + MPMX20_03279 0.69 +0.7
3,451,484 + MPMX20_03279 0.71 -1.5
3,451,484 + MPMX20_03279 0.71 -1.8
3,451,487 - MPMX20_03279 0.71 -0.3
3,451,492 - MPMX20_03279 0.72 +0.2
3,451,492 - MPMX20_03279 0.72 -0.3
3,451,492 - MPMX20_03279 0.72 +0.7
3,451,497 - MPMX20_03279 0.72 +0.1
3,451,502 - MPMX20_03279 0.72 +0.2
3,451,507 - MPMX20_03279 0.72 -0.7
3,451,542 + MPMX20_03279 0.75 +1.1
3,451,567 + MPMX20_03279 0.76 +0.2
3,451,571 - MPMX20_03279 0.76 -0.1
3,451,589 - MPMX20_03279 0.77 -0.2
3,451,589 - MPMX20_03279 0.77 +1.1
3,451,617 - MPMX20_03279 0.79 +1.1
3,451,619 - MPMX20_03279 0.79 +0.1
3,451,625 + MPMX20_03279 0.80 +0.2
3,451,625 + MPMX20_03279 0.80 -1.4
3,451,631 - MPMX20_03279 0.80 +1.9
3,451,633 - MPMX20_03279 0.80 +0.5
3,451,666 + MPMX20_03279 0.82 -1.0
3,451,673 + MPMX20_03279 0.82 -0.9
3,451,681 - MPMX20_03279 0.83 -0.3
3,451,697 - MPMX20_03279 0.84 +0.5
3,451,698 - MPMX20_03279 0.84 +0.4
3,451,698 - MPMX20_03279 0.84 -0.3
3,451,702 + MPMX20_03279 0.84 -0.1
3,451,712 + MPMX20_03279 0.85 +1.7
3,451,733 - MPMX20_03279 0.86 -0.5
3,451,791 + MPMX20_03279 0.89 -0.8
3,451,797 + MPMX20_03279 0.90 -0.7
3,451,805 - +0.4
3,451,820 + +0.2
3,451,830 + +1.5
3,451,836 - -0.9
3,451,848 + -0.7
3,451,963 + -0.2
3,452,029 + +0.0
3,452,081 - MPMX20_03280 0.14 -0.8
3,452,081 - MPMX20_03280 0.14 +0.0
3,452,084 + MPMX20_03280 0.14 -1.2
3,452,085 + MPMX20_03280 0.14 -0.0
3,452,085 + MPMX20_03280 0.14 -0.2
3,452,085 + MPMX20_03280 0.14 +0.0
3,452,085 + MPMX20_03280 0.14 -0.4
3,452,092 - MPMX20_03280 0.15 +0.9
3,452,092 - MPMX20_03280 0.15 +1.7
3,452,092 - MPMX20_03280 0.15 +0.4
3,452,092 - MPMX20_03280 0.15 -0.4
3,452,093 - MPMX20_03280 0.15 -0.3
3,452,093 - MPMX20_03280 0.15 -0.5
3,452,093 - MPMX20_03280 0.15 +0.1
3,452,163 + MPMX20_03280 0.25 +0.3
3,452,171 - MPMX20_03280 0.26 -0.7
3,452,249 - MPMX20_03280 0.36 +0.2
3,452,251 - MPMX20_03280 0.37 -0.3
3,452,251 - MPMX20_03280 0.37 -0.3
3,452,323 + MPMX20_03280 0.47 +0.4
3,452,355 - MPMX20_03280 0.51 +1.2
3,452,355 - MPMX20_03280 0.51 -0.8
3,452,391 + MPMX20_03280 0.56 -0.0
3,452,391 + MPMX20_03280 0.56 +0.2
3,452,399 - MPMX20_03280 0.57 +2.1
3,452,399 - MPMX20_03280 0.57 -0.6
3,452,399 - MPMX20_03280 0.57 -1.7
3,452,399 - MPMX20_03280 0.57 -0.9
3,452,759 - -1.1
3,452,783 - -0.5
3,452,783 - +0.7
3,452,796 + -0.8
3,452,796 + -0.5
3,452,801 + -0.1
3,452,809 - +0.2
3,452,828 + +0.3
3,452,833 + -1.1
3,452,892 - MPMX20_03281 0.15 +0.1
3,452,892 - MPMX20_03281 0.15 -2.5
3,452,942 + MPMX20_03281 0.20 +1.7
3,452,953 + MPMX20_03281 0.21 +0.1
3,453,045 - MPMX20_03281 0.31 +1.1
3,453,124 + MPMX20_03281 0.39 -0.0
3,453,204 + MPMX20_03281 0.47 +0.3
3,453,226 + MPMX20_03281 0.50 +0.5
3,453,252 + MPMX20_03281 0.52 +1.9
3,453,252 + MPMX20_03281 0.52 -2.5
3,453,257 + MPMX20_03281 0.53 +1.6
3,453,260 - MPMX20_03281 0.53 +0.4
3,453,283 + MPMX20_03281 0.56 -2.5
3,453,285 - MPMX20_03281 0.56 +2.2
3,453,500 - MPMX20_03281 0.78 +0.8
3,453,501 + MPMX20_03281 0.78 +0.1
3,453,503 - MPMX20_03281 0.78 +0.5
3,453,547 + MPMX20_03281 0.83 +0.4
3,453,558 - MPMX20_03281 0.84 -0.1
3,453,561 + MPMX20_03281 0.84 +1.1
3,453,571 + MPMX20_03281 0.85 -0.1
3,453,571 + MPMX20_03281 0.85 -0.4
3,453,579 - MPMX20_03281 0.86 -0.4
3,453,585 + MPMX20_03281 0.87 +0.7
3,453,596 + MPMX20_03281 0.88 +0.8
3,453,609 - MPMX20_03281 0.89 +0.3
3,453,657 + -0.9
3,453,660 - -1.4
3,453,660 - +0.0
3,453,660 - +1.1
3,453,696 + +6.7
3,453,713 + +1.3

Or see this region's nucleotide sequence