Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_02624

Experiment: 0.1X LB plate, Mixed culture; Bacillus zanthoxyli TBS_055 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_02622 and MPMX20_02623 are separated by 9 nucleotidesMPMX20_02623 and MPMX20_02624 are separated by 2 nucleotidesMPMX20_02624 and MPMX20_02625 are separated by 228 nucleotides MPMX20_02622: MPMX20_02622 - Bicarbonate transport ATP-binding protein CmpC, at 2,766,678 to 2,767,466 _02622 MPMX20_02623: MPMX20_02623 - Bicarbonate transport system permease protein CmpB, at 2,767,476 to 2,768,357 _02623 MPMX20_02624: MPMX20_02624 - Nitrate/nitrite binding protein NrtA, at 2,768,360 to 2,769,607 _02624 MPMX20_02625: MPMX20_02625 - Nitrate regulatory protein, at 2,769,836 to 2,771,020 _02625 Position (kb) 2768 2769 2770Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6 7at 2767.515 kb on - strandat 2767.517 kb on + strandat 2767.519 kb on - strandat 2767.544 kb on + strandat 2767.772 kb on + strand, within MPMX20_02623at 2767.772 kb on + strand, within MPMX20_02623at 2767.779 kb on - strand, within MPMX20_02623at 2767.779 kb on - strand, within MPMX20_02623at 2767.780 kb on - strand, within MPMX20_02623at 2767.790 kb on + strand, within MPMX20_02623at 2767.798 kb on - strand, within MPMX20_02623at 2767.802 kb on + strand, within MPMX20_02623at 2767.805 kb on - strand, within MPMX20_02623at 2767.805 kb on - strand, within MPMX20_02623at 2767.811 kb on - strand, within MPMX20_02623at 2767.831 kb on - strand, within MPMX20_02623at 2767.831 kb on - strand, within MPMX20_02623at 2767.923 kb on - strand, within MPMX20_02623at 2767.924 kb on + strand, within MPMX20_02623at 2767.976 kb on - strand, within MPMX20_02623at 2768.018 kb on + strand, within MPMX20_02623at 2768.110 kb on - strand, within MPMX20_02623at 2768.112 kb on + strand, within MPMX20_02623at 2768.203 kb on + strand, within MPMX20_02623at 2768.267 kb on - strand, within MPMX20_02623at 2768.351 kb on - strandat 2768.367 kb on + strandat 2768.367 kb on + strandat 2768.417 kb on + strandat 2768.516 kb on - strand, within MPMX20_02624at 2768.518 kb on + strand, within MPMX20_02624at 2768.549 kb on - strand, within MPMX20_02624at 2768.664 kb on + strand, within MPMX20_02624at 2768.674 kb on + strand, within MPMX20_02624at 2768.674 kb on + strand, within MPMX20_02624at 2768.677 kb on - strand, within MPMX20_02624at 2768.841 kb on + strand, within MPMX20_02624at 2768.864 kb on + strand, within MPMX20_02624at 2768.872 kb on - strand, within MPMX20_02624at 2769.050 kb on - strand, within MPMX20_02624at 2769.050 kb on - strand, within MPMX20_02624at 2769.095 kb on - strand, within MPMX20_02624at 2769.096 kb on - strand, within MPMX20_02624at 2769.251 kb on - strand, within MPMX20_02624at 2769.367 kb on - strand, within MPMX20_02624at 2769.372 kb on - strand, within MPMX20_02624at 2769.466 kb on + strand, within MPMX20_02624at 2769.474 kb on - strand, within MPMX20_02624at 2769.501 kb on - strandat 2769.553 kb on - strandat 2769.567 kb on + strandat 2769.676 kb on - strandat 2769.676 kb on - strandat 2769.688 kb on + strandat 2769.790 kb on + strandat 2769.849 kb on - strandat 2769.934 kb on + strandat 2769.939 kb on + strandat 2769.939 kb on + strandat 2769.947 kb on - strandat 2769.947 kb on - strandat 2770.012 kb on + strand, within MPMX20_02625at 2770.020 kb on - strand, within MPMX20_02625at 2770.040 kb on - strand, within MPMX20_02625at 2770.054 kb on + strand, within MPMX20_02625at 2770.132 kb on + strand, within MPMX20_02625at 2770.173 kb on - strand, within MPMX20_02625at 2770.210 kb on + strand, within MPMX20_02625at 2770.210 kb on + strand, within MPMX20_02625at 2770.210 kb on + strand, within MPMX20_02625at 2770.218 kb on + strand, within MPMX20_02625at 2770.218 kb on - strand, within MPMX20_02625at 2770.254 kb on + strand, within MPMX20_02625at 2770.262 kb on - strand, within MPMX20_02625at 2770.262 kb on - strand, within MPMX20_02625at 2770.262 kb on - strand, within MPMX20_02625at 2770.262 kb on - strand, within MPMX20_02625at 2770.272 kb on - strand, within MPMX20_02625at 2770.324 kb on - strand, within MPMX20_02625at 2770.387 kb on - strand, within MPMX20_02625at 2770.406 kb on + strand, within MPMX20_02625at 2770.599 kb on - strand, within MPMX20_02625

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Per-strain Table

Position Strand Gene LocusTag Fraction 0.1X LB plate, Mixed culture; Bacillus zanthoxyli TBS_055 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
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2,767,515 - -0.9
2,767,517 + -0.5
2,767,519 - -0.5
2,767,544 + -0.7
2,767,772 + MPMX20_02623 0.34 -0.0
2,767,772 + MPMX20_02623 0.34 +0.9
2,767,779 - MPMX20_02623 0.34 +0.4
2,767,779 - MPMX20_02623 0.34 -1.2
2,767,780 - MPMX20_02623 0.34 -0.6
2,767,790 + MPMX20_02623 0.36 -1.2
2,767,798 - MPMX20_02623 0.37 -2.6
2,767,802 + MPMX20_02623 0.37 -2.2
2,767,805 - MPMX20_02623 0.37 -0.8
2,767,805 - MPMX20_02623 0.37 +1.2
2,767,811 - MPMX20_02623 0.38 -2.0
2,767,831 - MPMX20_02623 0.40 -1.8
2,767,831 - MPMX20_02623 0.40 -0.2
2,767,923 - MPMX20_02623 0.51 -0.8
2,767,924 + MPMX20_02623 0.51 +1.0
2,767,976 - MPMX20_02623 0.57 +1.5
2,768,018 + MPMX20_02623 0.61 -0.0
2,768,110 - MPMX20_02623 0.72 -0.1
2,768,112 + MPMX20_02623 0.72 -0.6
2,768,203 + MPMX20_02623 0.82 -0.3
2,768,267 - MPMX20_02623 0.90 -2.4
2,768,351 - -0.4
2,768,367 + -1.1
2,768,367 + -1.7
2,768,417 + -0.9
2,768,516 - MPMX20_02624 0.12 +3.1
2,768,518 + MPMX20_02624 0.13 -1.1
2,768,549 - MPMX20_02624 0.15 -0.7
2,768,664 + MPMX20_02624 0.24 +1.5
2,768,674 + MPMX20_02624 0.25 +0.2
2,768,674 + MPMX20_02624 0.25 +6.3
2,768,677 - MPMX20_02624 0.25 +0.6
2,768,841 + MPMX20_02624 0.39 +0.5
2,768,864 + MPMX20_02624 0.40 +0.0
2,768,872 - MPMX20_02624 0.41 +0.6
2,769,050 - MPMX20_02624 0.55 -1.3
2,769,050 - MPMX20_02624 0.55 +0.6
2,769,095 - MPMX20_02624 0.59 +0.8
2,769,096 - MPMX20_02624 0.59 -1.4
2,769,251 - MPMX20_02624 0.71 +0.0
2,769,367 - MPMX20_02624 0.81 +0.8
2,769,372 - MPMX20_02624 0.81 +0.3
2,769,466 + MPMX20_02624 0.89 -0.9
2,769,474 - MPMX20_02624 0.89 +0.1
2,769,501 - +1.2
2,769,553 - +1.5
2,769,567 + +1.5
2,769,676 - -0.0
2,769,676 - +7.0
2,769,688 + -2.0
2,769,790 + -1.5
2,769,849 - +0.0
2,769,934 + -1.4
2,769,939 + -0.1
2,769,939 + +0.9
2,769,947 - +0.5
2,769,947 - -0.3
2,770,012 + MPMX20_02625 0.15 -0.3
2,770,020 - MPMX20_02625 0.16 -0.8
2,770,040 - MPMX20_02625 0.17 +0.2
2,770,054 + MPMX20_02625 0.18 -1.3
2,770,132 + MPMX20_02625 0.25 -0.8
2,770,173 - MPMX20_02625 0.28 -1.1
2,770,210 + MPMX20_02625 0.32 -0.4
2,770,210 + MPMX20_02625 0.32 -1.6
2,770,210 + MPMX20_02625 0.32 -1.4
2,770,218 + MPMX20_02625 0.32 +0.2
2,770,218 - MPMX20_02625 0.32 -1.1
2,770,254 + MPMX20_02625 0.35 -1.0
2,770,262 - MPMX20_02625 0.36 +0.2
2,770,262 - MPMX20_02625 0.36 +0.2
2,770,262 - MPMX20_02625 0.36 +0.8
2,770,262 - MPMX20_02625 0.36 +0.9
2,770,272 - MPMX20_02625 0.37 +0.4
2,770,324 - MPMX20_02625 0.41 -0.1
2,770,387 - MPMX20_02625 0.46 -1.0
2,770,406 + MPMX20_02625 0.48 +0.0
2,770,599 - MPMX20_02625 0.64 +0.6

Or see this region's nucleotide sequence