Experiment: 0.1X LB plate, Mixed culture; Bacillus zanthoxyli TBS_055 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02435 and MPMX20_02436 are separated by 76 nucleotides MPMX20_02436 and MPMX20_02437 are separated by 3 nucleotides MPMX20_02437 and MPMX20_02438 are separated by 134 nucleotides MPMX20_02438 and MPMX20_02439 are separated by 144 nucleotides MPMX20_02439 and MPMX20_02440 are separated by 348 nucleotides
MPMX20_02435: MPMX20_02435 - hypothetical protein, at 2,574,016 to 2,574,213
_02435
MPMX20_02436: MPMX20_02436 - hypothetical protein, at 2,574,290 to 2,574,703
_02436
MPMX20_02437: MPMX20_02437 - hypothetical protein, at 2,574,707 to 2,574,904
_02437
MPMX20_02438: MPMX20_02438 - hypothetical protein, at 2,575,039 to 2,575,488
_02438
MPMX20_02439: MPMX20_02439 - hypothetical protein, at 2,575,633 to 2,575,977
_02439
MPMX20_02440: MPMX20_02440 - tRNA-cytidine(32) 2-sulfurtransferase, at 2,576,326 to 2,577,261
_02440
Position (kb)
2575
2576 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 2574.045 kb on - strand, within MPMX20_02435 at 2574.051 kb on - strand, within MPMX20_02435 at 2574.058 kb on + strand, within MPMX20_02435 at 2574.058 kb on + strand, within MPMX20_02435 at 2574.058 kb on + strand, within MPMX20_02435 at 2574.058 kb on + strand, within MPMX20_02435 at 2574.060 kb on + strand, within MPMX20_02435 at 2574.066 kb on - strand, within MPMX20_02435 at 2574.066 kb on - strand, within MPMX20_02435 at 2574.066 kb on - strand, within MPMX20_02435 at 2574.066 kb on - strand, within MPMX20_02435 at 2574.066 kb on - strand, within MPMX20_02435 at 2574.066 kb on - strand, within MPMX20_02435 at 2574.066 kb on - strand, within MPMX20_02435 at 2574.066 kb on - strand, within MPMX20_02435 at 2574.068 kb on - strand, within MPMX20_02435 at 2574.068 kb on - strand, within MPMX20_02435 at 2574.068 kb on - strand, within MPMX20_02435 at 2574.078 kb on + strand, within MPMX20_02435 at 2574.086 kb on - strand, within MPMX20_02435 at 2574.086 kb on - strand, within MPMX20_02435 at 2574.086 kb on - strand, within MPMX20_02435 at 2574.098 kb on + strand, within MPMX20_02435 at 2574.103 kb on - strand, within MPMX20_02435 at 2574.117 kb on - strand, within MPMX20_02435 at 2574.131 kb on + strand, within MPMX20_02435 at 2574.139 kb on - strand, within MPMX20_02435 at 2574.164 kb on - strand, within MPMX20_02435 at 2574.171 kb on - strand, within MPMX20_02435 at 2574.248 kb on + strand at 2574.248 kb on + strand at 2574.253 kb on + strand at 2574.256 kb on - strand at 2574.256 kb on - strand at 2574.261 kb on - strand at 2574.261 kb on - strand at 2574.267 kb on + strand at 2574.275 kb on - strand at 2574.275 kb on - strand at 2574.343 kb on - strand, within MPMX20_02436 at 2574.343 kb on - strand, within MPMX20_02436 at 2574.352 kb on + strand, within MPMX20_02436 at 2574.352 kb on + strand, within MPMX20_02436 at 2574.360 kb on - strand, within MPMX20_02436 at 2574.368 kb on - strand, within MPMX20_02436 at 2574.394 kb on + strand, within MPMX20_02436 at 2574.418 kb on + strand, within MPMX20_02436 at 2574.439 kb on + strand, within MPMX20_02436 at 2574.462 kb on + strand, within MPMX20_02436 at 2574.509 kb on - strand, within MPMX20_02436 at 2574.557 kb on + strand, within MPMX20_02436 at 2574.578 kb on - strand, within MPMX20_02436 at 2574.612 kb on + strand, within MPMX20_02436 at 2574.620 kb on - strand, within MPMX20_02436 at 2574.620 kb on - strand, within MPMX20_02436 at 2574.636 kb on - strand, within MPMX20_02436 at 2574.646 kb on - strand, within MPMX20_02436 at 2574.672 kb on + strand at 2574.672 kb on + strand at 2574.685 kb on - strand at 2574.690 kb on - strand at 2574.715 kb on + strand at 2574.720 kb on - strand at 2574.783 kb on + strand, within MPMX20_02437 at 2574.783 kb on + strand, within MPMX20_02437 at 2574.788 kb on + strand, within MPMX20_02437 at 2574.788 kb on + strand, within MPMX20_02437 at 2574.791 kb on - strand, within MPMX20_02437 at 2574.791 kb on - strand, within MPMX20_02437 at 2574.796 kb on - strand, within MPMX20_02437 at 2574.796 kb on - strand, within MPMX20_02437 at 2574.810 kb on - strand, within MPMX20_02437 at 2574.818 kb on + strand, within MPMX20_02437 at 2574.823 kb on - strand, within MPMX20_02437 at 2574.831 kb on + strand, within MPMX20_02437 at 2574.866 kb on - strand, within MPMX20_02437 at 2574.914 kb on + strand at 2574.914 kb on + strand at 2574.914 kb on + strand at 2574.922 kb on - strand at 2574.922 kb on - strand at 2574.922 kb on - strand at 2574.922 kb on - strand at 2574.922 kb on - strand at 2574.922 kb on - strand at 2574.975 kb on + strand at 2574.993 kb on + strand at 2575.085 kb on + strand, within MPMX20_02438 at 2575.085 kb on + strand, within MPMX20_02438 at 2575.093 kb on - strand, within MPMX20_02438 at 2575.093 kb on - strand, within MPMX20_02438 at 2575.093 kb on - strand, within MPMX20_02438 at 2575.093 kb on - strand, within MPMX20_02438 at 2575.093 kb on - strand, within MPMX20_02438 at 2575.093 kb on - strand, within MPMX20_02438 at 2575.093 kb on - strand, within MPMX20_02438 at 2575.093 kb on - strand, within MPMX20_02438 at 2575.093 kb on - strand, within MPMX20_02438 at 2575.093 kb on - strand, within MPMX20_02438 at 2575.093 kb on - strand, within MPMX20_02438 at 2575.137 kb on + strand, within MPMX20_02438 at 2575.142 kb on + strand, within MPMX20_02438 at 2575.146 kb on - strand, within MPMX20_02438 at 2575.150 kb on - strand, within MPMX20_02438 at 2575.161 kb on + strand, within MPMX20_02438 at 2575.161 kb on + strand, within MPMX20_02438 at 2575.187 kb on + strand, within MPMX20_02438 at 2575.187 kb on + strand, within MPMX20_02438 at 2575.187 kb on + strand, within MPMX20_02438 at 2575.195 kb on - strand, within MPMX20_02438 at 2575.195 kb on - strand, within MPMX20_02438 at 2575.195 kb on - strand, within MPMX20_02438 at 2575.196 kb on + strand, within MPMX20_02438 at 2575.196 kb on + strand, within MPMX20_02438 at 2575.197 kb on + strand, within MPMX20_02438 at 2575.201 kb on + strand, within MPMX20_02438 at 2575.206 kb on + strand, within MPMX20_02438 at 2575.211 kb on + strand, within MPMX20_02438 at 2575.259 kb on - strand, within MPMX20_02438 at 2575.261 kb on + strand, within MPMX20_02438 at 2575.269 kb on - strand, within MPMX20_02438 at 2575.289 kb on + strand, within MPMX20_02438 at 2575.322 kb on + strand, within MPMX20_02438 at 2575.322 kb on + strand, within MPMX20_02438 at 2575.322 kb on + strand, within MPMX20_02438 at 2575.322 kb on + strand, within MPMX20_02438 at 2575.322 kb on + strand, within MPMX20_02438 at 2575.322 kb on + strand, within MPMX20_02438 at 2575.322 kb on + strand, within MPMX20_02438 at 2575.322 kb on + strand, within MPMX20_02438 at 2575.322 kb on + strand, within MPMX20_02438 at 2575.328 kb on + strand, within MPMX20_02438 at 2575.330 kb on - strand, within MPMX20_02438 at 2575.330 kb on - strand, within MPMX20_02438 at 2575.330 kb on - strand, within MPMX20_02438 at 2575.330 kb on - strand, within MPMX20_02438 at 2575.330 kb on - strand, within MPMX20_02438 at 2575.330 kb on - strand, within MPMX20_02438 at 2575.330 kb on - strand, within MPMX20_02438 at 2575.330 kb on - strand, within MPMX20_02438 at 2575.353 kb on + strand, within MPMX20_02438 at 2575.365 kb on + strand, within MPMX20_02438 at 2575.457 kb on + strand at 2575.502 kb on - strand at 2575.502 kb on - strand at 2575.556 kb on - strand at 2575.594 kb on + strand at 2575.594 kb on + strand at 2575.602 kb on - strand at 2575.602 kb on - strand at 2575.602 kb on - strand at 2575.602 kb on - strand at 2575.640 kb on - strand at 2575.647 kb on - strand at 2575.647 kb on - strand at 2575.655 kb on + strand at 2575.656 kb on - strand at 2575.657 kb on - strand at 2575.672 kb on - strand, within MPMX20_02439 at 2575.755 kb on + strand, within MPMX20_02439 at 2575.765 kb on - strand, within MPMX20_02439 at 2575.855 kb on + strand, within MPMX20_02439 at 2575.861 kb on - strand, within MPMX20_02439 at 2575.863 kb on + strand, within MPMX20_02439 at 2575.870 kb on + strand, within MPMX20_02439 at 2575.871 kb on - strand, within MPMX20_02439 at 2575.878 kb on - strand, within MPMX20_02439 at 2575.899 kb on + strand, within MPMX20_02439 at 2575.899 kb on + strand, within MPMX20_02439 at 2575.937 kb on + strand, within MPMX20_02439 at 2575.945 kb on - strand at 2575.972 kb on + strand at 2575.979 kb on + strand at 2575.980 kb on - strand at 2575.987 kb on - strand at 2575.987 kb on - strand at 2575.992 kb on - strand at 2576.004 kb on - strand at 2576.004 kb on - strand at 2576.014 kb on - strand at 2576.031 kb on + strand at 2576.049 kb on + strand at 2576.059 kb on + strand at 2576.141 kb on - strand at 2576.143 kb on - strand at 2576.230 kb on + strand at 2576.244 kb on + strand at 2576.272 kb on + strand at 2576.272 kb on + strand at 2576.280 kb on - strand at 2576.280 kb on - strand at 2576.280 kb on - strand at 2576.280 kb on - strand at 2576.287 kb on + strand at 2576.295 kb on - strand at 2576.295 kb on - strand at 2576.377 kb on + strand at 2576.377 kb on + strand at 2576.385 kb on - strand at 2576.385 kb on - strand at 2576.385 kb on - strand at 2576.386 kb on + strand at 2576.404 kb on + strand at 2576.486 kb on - strand, within MPMX20_02440 at 2576.486 kb on - strand, within MPMX20_02440 at 2576.486 kb on - strand, within MPMX20_02440 at 2576.488 kb on + strand, within MPMX20_02440
Per-strain Table
Position Strand Gene LocusTag Fraction 0.1X LB plate, Mixed culture; Bacillus zanthoxyli TBS_055 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct remove 2,574,045 - MPMX20_02435 0.15 -1.5 2,574,051 - MPMX20_02435 0.18 +0.4 2,574,058 + MPMX20_02435 0.21 +1.4 2,574,058 + MPMX20_02435 0.21 -1.3 2,574,058 + MPMX20_02435 0.21 +0.0 2,574,058 + MPMX20_02435 0.21 -0.6 2,574,060 + MPMX20_02435 0.22 +0.8 2,574,066 - MPMX20_02435 0.25 +1.0 2,574,066 - MPMX20_02435 0.25 -0.9 2,574,066 - MPMX20_02435 0.25 -0.6 2,574,066 - MPMX20_02435 0.25 +1.4 2,574,066 - MPMX20_02435 0.25 -2.6 2,574,066 - MPMX20_02435 0.25 -0.9 2,574,066 - MPMX20_02435 0.25 +1.8 2,574,066 - MPMX20_02435 0.25 -0.2 2,574,068 - MPMX20_02435 0.26 +1.4 2,574,068 - MPMX20_02435 0.26 -0.9 2,574,068 - MPMX20_02435 0.26 -1.0 2,574,078 + MPMX20_02435 0.31 -0.4 2,574,086 - MPMX20_02435 0.35 -0.0 2,574,086 - MPMX20_02435 0.35 -0.2 2,574,086 - MPMX20_02435 0.35 -0.6 2,574,098 + MPMX20_02435 0.41 +1.1 2,574,103 - MPMX20_02435 0.44 -1.0 2,574,117 - MPMX20_02435 0.51 +1.1 2,574,131 + MPMX20_02435 0.58 -1.5 2,574,139 - MPMX20_02435 0.62 -0.8 2,574,164 - MPMX20_02435 0.75 -0.3 2,574,171 - MPMX20_02435 0.78 -0.4 2,574,248 + +0.3 2,574,248 + -0.4 2,574,253 + +0.1 2,574,256 - -1.5 2,574,256 - +0.9 2,574,261 - -1.2 2,574,261 - -0.1 2,574,267 + -0.5 2,574,275 - -0.8 2,574,275 - -1.8 2,574,343 - MPMX20_02436 0.13 +0.5 2,574,343 - MPMX20_02436 0.13 +0.1 2,574,352 + MPMX20_02436 0.15 -1.2 2,574,352 + MPMX20_02436 0.15 -1.0 2,574,360 - MPMX20_02436 0.17 -0.0 2,574,368 - MPMX20_02436 0.19 +1.4 2,574,394 + MPMX20_02436 0.25 -0.3 2,574,418 + MPMX20_02436 0.31 -1.0 2,574,439 + MPMX20_02436 0.36 +0.5 2,574,462 + MPMX20_02436 0.42 -2.2 2,574,509 - MPMX20_02436 0.53 -0.7 2,574,557 + MPMX20_02436 0.64 +0.1 2,574,578 - MPMX20_02436 0.70 +0.4 2,574,612 + MPMX20_02436 0.78 -1.3 2,574,620 - MPMX20_02436 0.80 +1.4 2,574,620 - MPMX20_02436 0.80 -0.3 2,574,636 - MPMX20_02436 0.84 -1.2 2,574,646 - MPMX20_02436 0.86 +0.1 2,574,672 + +0.8 2,574,672 + -0.9 2,574,685 - -0.6 2,574,690 - +1.8 2,574,715 + -1.8 2,574,720 - -1.1 2,574,783 + MPMX20_02437 0.38 +0.3 2,574,783 + MPMX20_02437 0.38 +0.8 2,574,788 + MPMX20_02437 0.41 -1.2 2,574,788 + MPMX20_02437 0.41 -0.4 2,574,791 - MPMX20_02437 0.42 -1.4 2,574,791 - MPMX20_02437 0.42 -1.2 2,574,796 - MPMX20_02437 0.45 +1.0 2,574,796 - MPMX20_02437 0.45 -1.9 2,574,810 - MPMX20_02437 0.52 -0.0 2,574,818 + MPMX20_02437 0.56 -0.8 2,574,823 - MPMX20_02437 0.59 -1.8 2,574,831 + MPMX20_02437 0.63 +1.3 2,574,866 - MPMX20_02437 0.80 +1.6 2,574,914 + -1.2 2,574,914 + -0.8 2,574,914 + -1.3 2,574,922 - -2.2 2,574,922 - -0.5 2,574,922 - -1.2 2,574,922 - +3.6 2,574,922 - -0.5 2,574,922 - -1.0 2,574,975 + -1.8 2,574,993 + -0.8 2,575,085 + MPMX20_02438 0.10 -0.3 2,575,085 + MPMX20_02438 0.10 +2.4 2,575,093 - MPMX20_02438 0.12 -3.0 2,575,093 - MPMX20_02438 0.12 -0.8 2,575,093 - MPMX20_02438 0.12 -1.7 2,575,093 - MPMX20_02438 0.12 -3.5 2,575,093 - MPMX20_02438 0.12 +0.4 2,575,093 - MPMX20_02438 0.12 -2.4 2,575,093 - MPMX20_02438 0.12 -0.3 2,575,093 - MPMX20_02438 0.12 -0.9 2,575,093 - MPMX20_02438 0.12 +0.4 2,575,093 - MPMX20_02438 0.12 +1.0 2,575,093 - MPMX20_02438 0.12 +0.4 2,575,137 + MPMX20_02438 0.22 -0.7 2,575,142 + MPMX20_02438 0.23 +0.8 2,575,146 - MPMX20_02438 0.24 -0.2 2,575,150 - MPMX20_02438 0.25 -0.2 2,575,161 + MPMX20_02438 0.27 +1.1 2,575,161 + MPMX20_02438 0.27 -1.1 2,575,187 + MPMX20_02438 0.33 +1.0 2,575,187 + MPMX20_02438 0.33 +0.1 2,575,187 + MPMX20_02438 0.33 +0.1 2,575,195 - MPMX20_02438 0.35 -0.8 2,575,195 - MPMX20_02438 0.35 -1.7 2,575,195 - MPMX20_02438 0.35 -1.4 2,575,196 + MPMX20_02438 0.35 -0.2 2,575,196 + MPMX20_02438 0.35 +2.4 2,575,197 + MPMX20_02438 0.35 -0.9 2,575,201 + MPMX20_02438 0.36 -0.9 2,575,206 + MPMX20_02438 0.37 -2.0 2,575,211 + MPMX20_02438 0.38 -2.3 2,575,259 - MPMX20_02438 0.49 -0.8 2,575,261 + MPMX20_02438 0.49 -0.8 2,575,269 - MPMX20_02438 0.51 +1.4 2,575,289 + MPMX20_02438 0.56 +0.4 2,575,322 + MPMX20_02438 0.63 -0.6 2,575,322 + MPMX20_02438 0.63 +2.2 2,575,322 + MPMX20_02438 0.63 +0.7 2,575,322 + MPMX20_02438 0.63 -1.5 2,575,322 + MPMX20_02438 0.63 -2.5 2,575,322 + MPMX20_02438 0.63 +0.4 2,575,322 + MPMX20_02438 0.63 -1.8 2,575,322 + MPMX20_02438 0.63 -0.6 2,575,322 + MPMX20_02438 0.63 -0.5 2,575,328 + MPMX20_02438 0.64 -0.1 2,575,330 - MPMX20_02438 0.65 +2.4 2,575,330 - MPMX20_02438 0.65 -0.2 2,575,330 - MPMX20_02438 0.65 -0.8 2,575,330 - MPMX20_02438 0.65 +0.8 2,575,330 - MPMX20_02438 0.65 -0.4 2,575,330 - MPMX20_02438 0.65 +0.4 2,575,330 - MPMX20_02438 0.65 -1.0 2,575,330 - MPMX20_02438 0.65 -0.5 2,575,353 + MPMX20_02438 0.70 -0.4 2,575,365 + MPMX20_02438 0.72 -0.2 2,575,457 + +1.0 2,575,502 - -0.5 2,575,502 - +1.8 2,575,556 - +1.4 2,575,594 + -1.8 2,575,594 + +0.8 2,575,602 - +0.7 2,575,602 - +0.1 2,575,602 - -0.3 2,575,602 - -1.7 2,575,640 - +0.8 2,575,647 - +0.6 2,575,647 - +2.4 2,575,655 + +3.0 2,575,656 - -0.4 2,575,657 - -1.0 2,575,672 - MPMX20_02439 0.11 +0.2 2,575,755 + MPMX20_02439 0.35 -0.2 2,575,765 - MPMX20_02439 0.38 -0.4 2,575,855 + MPMX20_02439 0.64 -1.6 2,575,861 - MPMX20_02439 0.66 -1.0 2,575,863 + MPMX20_02439 0.67 -0.6 2,575,870 + MPMX20_02439 0.69 +0.9 2,575,871 - MPMX20_02439 0.69 -1.3 2,575,878 - MPMX20_02439 0.71 -1.6 2,575,899 + MPMX20_02439 0.77 -1.2 2,575,899 + MPMX20_02439 0.77 -1.2 2,575,937 + MPMX20_02439 0.88 -0.3 2,575,945 - -0.2 2,575,972 + -0.3 2,575,979 + -1.3 2,575,980 - -0.2 2,575,987 - -0.2 2,575,987 - -0.3 2,575,992 - +0.4 2,576,004 - -0.0 2,576,004 - +0.2 2,576,014 - +1.1 2,576,031 + -0.0 2,576,049 + -0.2 2,576,059 + -0.0 2,576,141 - +0.8 2,576,143 - +0.4 2,576,230 + -2.4 2,576,244 + -0.9 2,576,272 + -1.7 2,576,272 + +0.5 2,576,280 - -1.5 2,576,280 - -0.6 2,576,280 - -0.9 2,576,280 - +1.6 2,576,287 + +1.1 2,576,295 - -0.1 2,576,295 - +4.0 2,576,377 + -0.6 2,576,377 + -0.7 2,576,385 - -1.0 2,576,385 - +3.7 2,576,385 - +0.4 2,576,386 + +0.8 2,576,404 + -1.1 2,576,486 - MPMX20_02440 0.17 -1.6 2,576,486 - MPMX20_02440 0.17 -0.9 2,576,486 - MPMX20_02440 0.17 +1.4 2,576,488 + MPMX20_02440 0.17 +1.8
Or see this region's nucleotide sequence