Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04001

Experiment: 0.1X LB plate, Mixed culture; Chryseobacterium geocarphospharae CO6 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_04000 and MPMX20_04001 are separated by 17 nucleotidesMPMX20_04001 and MPMX20_04002 are separated by 473 nucleotides MPMX20_04000: MPMX20_04000 - Altronate dehydratase, at 4,197,583 to 4,199,070 _04000 MPMX20_04001: MPMX20_04001 - Uronate isomerase, at 4,199,088 to 4,200,500 _04001 MPMX20_04002: MPMX20_04002 - Hexuronate transporter, at 4,200,974 to 4,202,272 _04002 Position (kb) 4199 4200 4201Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6 7 8 9 10at 4198.266 kb on + strand, within MPMX20_04000at 4198.282 kb on + strand, within MPMX20_04000at 4198.325 kb on - strand, within MPMX20_04000at 4198.348 kb on - strand, within MPMX20_04000at 4198.348 kb on - strand, within MPMX20_04000at 4198.361 kb on - strand, within MPMX20_04000at 4198.424 kb on + strand, within MPMX20_04000at 4198.432 kb on - strand, within MPMX20_04000at 4198.432 kb on - strand, within MPMX20_04000at 4198.438 kb on - strand, within MPMX20_04000at 4198.438 kb on - strand, within MPMX20_04000at 4198.438 kb on - strand, within MPMX20_04000at 4198.477 kb on + strand, within MPMX20_04000at 4198.477 kb on + strand, within MPMX20_04000at 4198.485 kb on - strand, within MPMX20_04000at 4198.566 kb on + strand, within MPMX20_04000at 4198.569 kb on + strand, within MPMX20_04000at 4198.574 kb on - strand, within MPMX20_04000at 4198.584 kb on - strand, within MPMX20_04000at 4198.595 kb on - strand, within MPMX20_04000at 4198.596 kb on + strand, within MPMX20_04000at 4198.741 kb on + strand, within MPMX20_04000at 4198.744 kb on - strand, within MPMX20_04000at 4198.905 kb on - strand, within MPMX20_04000at 4198.916 kb on + strand, within MPMX20_04000at 4198.922 kb on - strandat 4198.955 kb on + strandat 4198.963 kb on - strandat 4198.971 kb on + strandat 4198.979 kb on - strandat 4199.086 kb on + strandat 4199.094 kb on - strandat 4199.117 kb on - strandat 4199.175 kb on + strandat 4199.183 kb on - strandat 4199.210 kb on + strandat 4199.306 kb on - strand, within MPMX20_04001at 4199.361 kb on + strand, within MPMX20_04001at 4199.369 kb on - strand, within MPMX20_04001at 4199.398 kb on + strand, within MPMX20_04001at 4199.398 kb on + strand, within MPMX20_04001at 4199.400 kb on - strand, within MPMX20_04001at 4199.406 kb on - strand, within MPMX20_04001at 4199.406 kb on - strand, within MPMX20_04001at 4199.406 kb on - strand, within MPMX20_04001at 4199.406 kb on - strand, within MPMX20_04001at 4199.444 kb on + strand, within MPMX20_04001at 4199.444 kb on + strand, within MPMX20_04001at 4199.464 kb on + strand, within MPMX20_04001at 4199.528 kb on + strand, within MPMX20_04001at 4199.548 kb on + strand, within MPMX20_04001at 4199.550 kb on + strand, within MPMX20_04001at 4199.600 kb on + strand, within MPMX20_04001at 4199.600 kb on + strand, within MPMX20_04001at 4199.608 kb on - strand, within MPMX20_04001at 4199.621 kb on + strand, within MPMX20_04001at 4199.671 kb on + strand, within MPMX20_04001at 4199.679 kb on - strand, within MPMX20_04001at 4199.679 kb on - strand, within MPMX20_04001at 4199.754 kb on - strand, within MPMX20_04001at 4199.787 kb on + strand, within MPMX20_04001at 4199.795 kb on + strand, within MPMX20_04001at 4199.795 kb on + strand, within MPMX20_04001at 4199.795 kb on + strand, within MPMX20_04001at 4199.827 kb on + strand, within MPMX20_04001at 4199.827 kb on + strand, within MPMX20_04001at 4199.835 kb on - strand, within MPMX20_04001at 4199.842 kb on + strand, within MPMX20_04001at 4199.844 kb on + strand, within MPMX20_04001at 4199.844 kb on + strand, within MPMX20_04001at 4199.850 kb on - strand, within MPMX20_04001at 4199.857 kb on - strand, within MPMX20_04001at 4199.872 kb on + strand, within MPMX20_04001at 4200.005 kb on + strand, within MPMX20_04001at 4200.179 kb on + strand, within MPMX20_04001at 4200.207 kb on - strand, within MPMX20_04001at 4200.635 kb on - strandat 4200.637 kb on + strandat 4200.778 kb on - strandat 4200.824 kb on + strandat 4200.856 kb on + strandat 4200.857 kb on + strandat 4200.874 kb on - strandat 4200.892 kb on - strandat 4200.907 kb on - strandat 4200.922 kb on + strandat 4200.922 kb on + strandat 4200.922 kb on + strandat 4200.922 kb on + strandat 4200.930 kb on - strandat 4200.930 kb on - strandat 4200.930 kb on - strandat 4200.990 kb on - strandat 4201.013 kb on + strandat 4201.015 kb on + strandat 4201.031 kb on + strandat 4201.036 kb on + strandat 4201.043 kb on - strandat 4201.048 kb on + strandat 4201.070 kb on + strandat 4201.099 kb on - strandat 4201.115 kb on + strand, within MPMX20_04002at 4201.150 kb on - strand, within MPMX20_04002at 4201.341 kb on + strand, within MPMX20_04002at 4201.341 kb on + strand, within MPMX20_04002at 4201.451 kb on + strand, within MPMX20_04002at 4201.456 kb on - strand, within MPMX20_04002at 4201.477 kb on - strand, within MPMX20_04002at 4201.495 kb on - strand, within MPMX20_04002at 4201.495 kb on - strand, within MPMX20_04002at 4201.495 kb on - strand, within MPMX20_04002

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 0.1X LB plate, Mixed culture; Chryseobacterium geocarphospharae CO6 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
remove
4,198,266 + MPMX20_04000 0.46 -2.9
4,198,282 + MPMX20_04000 0.47 +0.1
4,198,325 - MPMX20_04000 0.50 -0.6
4,198,348 - MPMX20_04000 0.51 -0.5
4,198,348 - MPMX20_04000 0.51 +2.3
4,198,361 - MPMX20_04000 0.52 -0.9
4,198,424 + MPMX20_04000 0.57 -1.0
4,198,432 - MPMX20_04000 0.57 -0.0
4,198,432 - MPMX20_04000 0.57 +0.2
4,198,438 - MPMX20_04000 0.57 +0.1
4,198,438 - MPMX20_04000 0.57 +2.1
4,198,438 - MPMX20_04000 0.57 -0.5
4,198,477 + MPMX20_04000 0.60 -1.0
4,198,477 + MPMX20_04000 0.60 -0.3
4,198,485 - MPMX20_04000 0.61 -1.4
4,198,566 + MPMX20_04000 0.66 -1.4
4,198,569 + MPMX20_04000 0.66 -1.0
4,198,574 - MPMX20_04000 0.67 +0.3
4,198,584 - MPMX20_04000 0.67 +1.7
4,198,595 - MPMX20_04000 0.68 +0.3
4,198,596 + MPMX20_04000 0.68 +0.1
4,198,741 + MPMX20_04000 0.78 -1.5
4,198,744 - MPMX20_04000 0.78 -0.9
4,198,905 - MPMX20_04000 0.89 -0.3
4,198,916 + MPMX20_04000 0.90 -0.5
4,198,922 - +9.9
4,198,955 + +3.3
4,198,963 - -0.1
4,198,971 + +0.7
4,198,979 - +1.1
4,199,086 + +0.2
4,199,094 - -1.5
4,199,117 - +0.1
4,199,175 + -0.0
4,199,183 - -0.8
4,199,210 + -0.3
4,199,306 - MPMX20_04001 0.15 -0.9
4,199,361 + MPMX20_04001 0.19 -0.7
4,199,369 - MPMX20_04001 0.20 +0.3
4,199,398 + MPMX20_04001 0.22 -2.0
4,199,398 + MPMX20_04001 0.22 -1.9
4,199,400 - MPMX20_04001 0.22 -0.3
4,199,406 - MPMX20_04001 0.23 -0.6
4,199,406 - MPMX20_04001 0.23 -1.5
4,199,406 - MPMX20_04001 0.23 +0.1
4,199,406 - MPMX20_04001 0.23 +1.0
4,199,444 + MPMX20_04001 0.25 -1.0
4,199,444 + MPMX20_04001 0.25 -1.5
4,199,464 + MPMX20_04001 0.27 -1.1
4,199,528 + MPMX20_04001 0.31 -2.6
4,199,548 + MPMX20_04001 0.33 -0.6
4,199,550 + MPMX20_04001 0.33 -0.8
4,199,600 + MPMX20_04001 0.36 +1.3
4,199,600 + MPMX20_04001 0.36 -0.4
4,199,608 - MPMX20_04001 0.37 -0.3
4,199,621 + MPMX20_04001 0.38 -0.6
4,199,671 + MPMX20_04001 0.41 -0.7
4,199,679 - MPMX20_04001 0.42 -0.1
4,199,679 - MPMX20_04001 0.42 +2.3
4,199,754 - MPMX20_04001 0.47 -0.8
4,199,787 + MPMX20_04001 0.49 +2.1
4,199,795 + MPMX20_04001 0.50 -0.5
4,199,795 + MPMX20_04001 0.50 -1.1
4,199,795 + MPMX20_04001 0.50 +0.6
4,199,827 + MPMX20_04001 0.52 +0.7
4,199,827 + MPMX20_04001 0.52 +0.3
4,199,835 - MPMX20_04001 0.53 -1.1
4,199,842 + MPMX20_04001 0.53 +0.3
4,199,844 + MPMX20_04001 0.54 -0.5
4,199,844 + MPMX20_04001 0.54 +0.5
4,199,850 - MPMX20_04001 0.54 +3.3
4,199,857 - MPMX20_04001 0.54 -2.5
4,199,872 + MPMX20_04001 0.55 -1.1
4,200,005 + MPMX20_04001 0.65 +1.3
4,200,179 + MPMX20_04001 0.77 +0.9
4,200,207 - MPMX20_04001 0.79 -0.9
4,200,635 - +0.9
4,200,637 + -0.2
4,200,778 - -0.2
4,200,824 + -1.6
4,200,856 + -0.7
4,200,857 + -0.4
4,200,874 - -1.5
4,200,892 - +1.3
4,200,907 - +1.4
4,200,922 + +0.4
4,200,922 + -1.2
4,200,922 + +1.7
4,200,922 + -1.1
4,200,930 - -0.0
4,200,930 - +0.1
4,200,930 - +1.0
4,200,990 - -1.2
4,201,013 + +1.3
4,201,015 + +1.3
4,201,031 + -0.3
4,201,036 + +1.8
4,201,043 - +0.0
4,201,048 + +0.2
4,201,070 + -1.4
4,201,099 - -0.6
4,201,115 + MPMX20_04002 0.11 -1.5
4,201,150 - MPMX20_04002 0.14 -0.5
4,201,341 + MPMX20_04002 0.28 -0.8
4,201,341 + MPMX20_04002 0.28 -0.1
4,201,451 + MPMX20_04002 0.37 +1.5
4,201,456 - MPMX20_04002 0.37 -0.2
4,201,477 - MPMX20_04002 0.39 +0.1
4,201,495 - MPMX20_04002 0.40 -0.9
4,201,495 - MPMX20_04002 0.40 -0.1
4,201,495 - MPMX20_04002 0.40 +0.1

Or see this region's nucleotide sequence