Experiment: 0.1X LB plate, Mixed culture; Chryseobacterium geocarphospharae CO6 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03820 and MPMX20_03821 are separated by 244 nucleotides MPMX20_03821 and MPMX20_03822 are separated by 18 nucleotides MPMX20_03822 and MPMX20_03823 overlap by 23 nucleotides
MPMX20_03820: MPMX20_03820 - Membrane-bound lytic murein transglycosylase C, at 4,021,670 to 4,022,749
_03820
MPMX20_03821: MPMX20_03821 - Nucleoside permease NupG, at 4,022,994 to 4,024,250
_03821
MPMX20_03822: MPMX20_03822 - 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase, at 4,024,269 to 4,025,078
_03822
MPMX20_03823: MPMX20_03823 - Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase, at 4,025,056 to 4,025,595
_03823
Position (kb)
4022
4023
4024
4025 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5 at 4022.207 kb on - strand, within MPMX20_03820 at 4022.224 kb on + strand, within MPMX20_03820 at 4022.232 kb on - strand, within MPMX20_03820 at 4022.280 kb on + strand, within MPMX20_03820 at 4022.288 kb on - strand, within MPMX20_03820 at 4022.366 kb on - strand, within MPMX20_03820 at 4022.366 kb on - strand, within MPMX20_03820 at 4022.375 kb on + strand, within MPMX20_03820 at 4022.383 kb on + strand, within MPMX20_03820 at 4022.383 kb on + strand, within MPMX20_03820 at 4022.391 kb on - strand, within MPMX20_03820 at 4022.391 kb on - strand, within MPMX20_03820 at 4022.393 kb on + strand, within MPMX20_03820 at 4022.393 kb on + strand, within MPMX20_03820 at 4022.393 kb on + strand, within MPMX20_03820 at 4022.416 kb on + strand, within MPMX20_03820 at 4022.416 kb on + strand, within MPMX20_03820 at 4022.416 kb on + strand, within MPMX20_03820 at 4022.416 kb on + strand, within MPMX20_03820 at 4022.416 kb on + strand, within MPMX20_03820 at 4022.424 kb on - strand, within MPMX20_03820 at 4022.495 kb on - strand, within MPMX20_03820 at 4022.552 kb on - strand, within MPMX20_03820 at 4022.586 kb on - strand, within MPMX20_03820 at 4022.653 kb on + strand at 4022.751 kb on - strand at 4022.752 kb on + strand at 4022.753 kb on - strand at 4022.757 kb on + strand at 4022.762 kb on + strand at 4022.770 kb on - strand at 4022.770 kb on - strand at 4022.795 kb on - strand at 4022.899 kb on + strand at 4023.071 kb on - strand at 4023.103 kb on - strand at 4023.157 kb on - strand, within MPMX20_03821 at 4023.164 kb on + strand, within MPMX20_03821 at 4023.232 kb on + strand, within MPMX20_03821 at 4023.242 kb on + strand, within MPMX20_03821 at 4023.242 kb on + strand, within MPMX20_03821 at 4023.242 kb on + strand, within MPMX20_03821 at 4023.242 kb on + strand, within MPMX20_03821 at 4023.250 kb on - strand, within MPMX20_03821 at 4023.250 kb on - strand, within MPMX20_03821 at 4023.250 kb on - strand, within MPMX20_03821 at 4023.250 kb on - strand, within MPMX20_03821 at 4023.250 kb on - strand, within MPMX20_03821 at 4023.250 kb on - strand, within MPMX20_03821 at 4023.252 kb on + strand, within MPMX20_03821 at 4023.278 kb on + strand, within MPMX20_03821 at 4023.319 kb on + strand, within MPMX20_03821 at 4023.319 kb on + strand, within MPMX20_03821 at 4023.327 kb on - strand, within MPMX20_03821 at 4023.329 kb on + strand, within MPMX20_03821 at 4023.329 kb on + strand, within MPMX20_03821 at 4023.329 kb on + strand, within MPMX20_03821 at 4023.337 kb on - strand, within MPMX20_03821 at 4023.438 kb on + strand, within MPMX20_03821 at 4023.438 kb on + strand, within MPMX20_03821 at 4023.466 kb on + strand, within MPMX20_03821 at 4023.476 kb on + strand, within MPMX20_03821 at 4023.487 kb on + strand, within MPMX20_03821 at 4023.495 kb on - strand, within MPMX20_03821 at 4023.495 kb on - strand, within MPMX20_03821 at 4023.527 kb on - strand, within MPMX20_03821 at 4023.603 kb on - strand, within MPMX20_03821 at 4023.603 kb on - strand, within MPMX20_03821 at 4023.663 kb on - strand, within MPMX20_03821 at 4023.696 kb on + strand, within MPMX20_03821 at 4023.833 kb on + strand, within MPMX20_03821 at 4023.851 kb on + strand, within MPMX20_03821 at 4024.026 kb on + strand, within MPMX20_03821 at 4024.031 kb on + strand, within MPMX20_03821 at 4024.063 kb on + strand, within MPMX20_03821 at 4024.068 kb on + strand, within MPMX20_03821 at 4024.071 kb on - strand, within MPMX20_03821 at 4024.085 kb on - strand, within MPMX20_03821 at 4024.103 kb on + strand, within MPMX20_03821 at 4024.103 kb on + strand, within MPMX20_03821 at 4024.170 kb on + strand at 4024.178 kb on - strand at 4024.196 kb on + strand at 4024.204 kb on - strand at 4024.204 kb on - strand at 4024.204 kb on - strand at 4024.265 kb on + strand at 4024.273 kb on - strand at 4024.339 kb on - strand at 4024.367 kb on + strand, within MPMX20_03822 at 4024.375 kb on - strand, within MPMX20_03822 at 4024.416 kb on + strand, within MPMX20_03822 at 4024.416 kb on + strand, within MPMX20_03822 at 4024.419 kb on - strand, within MPMX20_03822 at 4024.429 kb on - strand, within MPMX20_03822 at 4024.459 kb on + strand, within MPMX20_03822 at 4024.459 kb on + strand, within MPMX20_03822 at 4024.467 kb on + strand, within MPMX20_03822 at 4024.493 kb on + strand, within MPMX20_03822 at 4024.550 kb on - strand, within MPMX20_03822 at 4024.581 kb on + strand, within MPMX20_03822 at 4024.615 kb on + strand, within MPMX20_03822 at 4024.627 kb on + strand, within MPMX20_03822 at 4024.630 kb on - strand, within MPMX20_03822 at 4024.660 kb on - strand, within MPMX20_03822 at 4024.669 kb on + strand, within MPMX20_03822 at 4024.671 kb on - strand, within MPMX20_03822 at 4024.671 kb on - strand, within MPMX20_03822 at 4024.684 kb on + strand, within MPMX20_03822 at 4024.800 kb on - strand, within MPMX20_03822 at 4024.859 kb on - strand, within MPMX20_03822 at 4024.866 kb on + strand, within MPMX20_03822 at 4024.873 kb on - strand, within MPMX20_03822 at 4024.874 kb on - strand, within MPMX20_03822 at 4024.874 kb on - strand, within MPMX20_03822 at 4024.875 kb on - strand, within MPMX20_03822 at 4024.877 kb on + strand, within MPMX20_03822 at 4024.877 kb on + strand, within MPMX20_03822 at 4024.918 kb on - strand, within MPMX20_03822 at 4024.968 kb on - strand, within MPMX20_03822 at 4024.968 kb on - strand, within MPMX20_03822 at 4024.973 kb on - strand, within MPMX20_03822 at 4024.982 kb on - strand, within MPMX20_03822 at 4025.135 kb on + strand, within MPMX20_03823 at 4025.148 kb on - strand, within MPMX20_03823 at 4025.148 kb on - strand, within MPMX20_03823 at 4025.179 kb on - strand, within MPMX20_03823 at 4025.209 kb on + strand, within MPMX20_03823 at 4025.214 kb on + strand, within MPMX20_03823 at 4025.217 kb on - strand, within MPMX20_03823 at 4025.217 kb on - strand, within MPMX20_03823 at 4025.222 kb on - strand, within MPMX20_03823
Per-strain Table
Position Strand Gene LocusTag Fraction 0.1X LB plate, Mixed culture; Chryseobacterium geocarphospharae CO6 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct remove 4,022,207 - MPMX20_03820 0.50 -0.4 4,022,224 + MPMX20_03820 0.51 -0.1 4,022,232 - MPMX20_03820 0.52 -0.3 4,022,280 + MPMX20_03820 0.56 +0.2 4,022,288 - MPMX20_03820 0.57 -0.2 4,022,366 - MPMX20_03820 0.64 +0.7 4,022,366 - MPMX20_03820 0.64 -0.3 4,022,375 + MPMX20_03820 0.65 -1.7 4,022,383 + MPMX20_03820 0.66 -1.5 4,022,383 + MPMX20_03820 0.66 +1.3 4,022,391 - MPMX20_03820 0.67 -1.6 4,022,391 - MPMX20_03820 0.67 -0.7 4,022,393 + MPMX20_03820 0.67 +0.7 4,022,393 + MPMX20_03820 0.67 -0.3 4,022,393 + MPMX20_03820 0.67 +0.3 4,022,416 + MPMX20_03820 0.69 -0.3 4,022,416 + MPMX20_03820 0.69 +1.0 4,022,416 + MPMX20_03820 0.69 +1.0 4,022,416 + MPMX20_03820 0.69 -0.5 4,022,416 + MPMX20_03820 0.69 +2.3 4,022,424 - MPMX20_03820 0.70 +0.7 4,022,495 - MPMX20_03820 0.76 +0.4 4,022,552 - MPMX20_03820 0.82 -1.4 4,022,586 - MPMX20_03820 0.85 -0.0 4,022,653 + +0.9 4,022,751 - +0.3 4,022,752 + -0.5 4,022,753 - +0.9 4,022,757 + -0.7 4,022,762 + -1.3 4,022,770 - -0.2 4,022,770 - -0.3 4,022,795 - +0.3 4,022,899 + -1.0 4,023,071 - +1.0 4,023,103 - -0.7 4,023,157 - MPMX20_03821 0.13 -1.0 4,023,164 + MPMX20_03821 0.14 +0.3 4,023,232 + MPMX20_03821 0.19 +0.7 4,023,242 + MPMX20_03821 0.20 +1.3 4,023,242 + MPMX20_03821 0.20 +1.2 4,023,242 + MPMX20_03821 0.20 +0.4 4,023,242 + MPMX20_03821 0.20 -1.0 4,023,250 - MPMX20_03821 0.20 -0.8 4,023,250 - MPMX20_03821 0.20 -0.7 4,023,250 - MPMX20_03821 0.20 +0.1 4,023,250 - MPMX20_03821 0.20 -0.0 4,023,250 - MPMX20_03821 0.20 -1.2 4,023,250 - MPMX20_03821 0.20 +0.4 4,023,252 + MPMX20_03821 0.21 +0.7 4,023,278 + MPMX20_03821 0.23 -1.3 4,023,319 + MPMX20_03821 0.26 -1.7 4,023,319 + MPMX20_03821 0.26 -0.3 4,023,327 - MPMX20_03821 0.26 +0.3 4,023,329 + MPMX20_03821 0.27 -0.2 4,023,329 + MPMX20_03821 0.27 -0.6 4,023,329 + MPMX20_03821 0.27 -0.0 4,023,337 - MPMX20_03821 0.27 -1.1 4,023,438 + MPMX20_03821 0.35 -0.5 4,023,438 + MPMX20_03821 0.35 +0.7 4,023,466 + MPMX20_03821 0.38 -1.6 4,023,476 + MPMX20_03821 0.38 +0.6 4,023,487 + MPMX20_03821 0.39 +1.1 4,023,495 - MPMX20_03821 0.40 -0.5 4,023,495 - MPMX20_03821 0.40 +5.0 4,023,527 - MPMX20_03821 0.42 -1.0 4,023,603 - MPMX20_03821 0.48 -0.5 4,023,603 - MPMX20_03821 0.48 -0.3 4,023,663 - MPMX20_03821 0.53 -0.2 4,023,696 + MPMX20_03821 0.56 -0.7 4,023,833 + MPMX20_03821 0.67 +0.5 4,023,851 + MPMX20_03821 0.68 -2.6 4,024,026 + MPMX20_03821 0.82 +0.7 4,024,031 + MPMX20_03821 0.82 -1.2 4,024,063 + MPMX20_03821 0.85 +0.3 4,024,068 + MPMX20_03821 0.85 -0.3 4,024,071 - MPMX20_03821 0.86 -0.9 4,024,085 - MPMX20_03821 0.87 -0.7 4,024,103 + MPMX20_03821 0.88 -1.2 4,024,103 + MPMX20_03821 0.88 -0.0 4,024,170 + -0.1 4,024,178 - -1.2 4,024,196 + +1.0 4,024,204 - +0.2 4,024,204 - +0.0 4,024,204 - -1.0 4,024,265 + +2.3 4,024,273 - +0.4 4,024,339 - -0.4 4,024,367 + MPMX20_03822 0.12 -2.0 4,024,375 - MPMX20_03822 0.13 +0.3 4,024,416 + MPMX20_03822 0.18 +0.3 4,024,416 + MPMX20_03822 0.18 -0.6 4,024,419 - MPMX20_03822 0.19 -0.9 4,024,429 - MPMX20_03822 0.20 -0.6 4,024,459 + MPMX20_03822 0.23 -0.4 4,024,459 + MPMX20_03822 0.23 -2.7 4,024,467 + MPMX20_03822 0.24 +0.4 4,024,493 + MPMX20_03822 0.28 -0.5 4,024,550 - MPMX20_03822 0.35 +1.9 4,024,581 + MPMX20_03822 0.39 -0.3 4,024,615 + MPMX20_03822 0.43 -0.7 4,024,627 + MPMX20_03822 0.44 +1.5 4,024,630 - MPMX20_03822 0.45 +0.5 4,024,660 - MPMX20_03822 0.48 +1.0 4,024,669 + MPMX20_03822 0.49 +1.9 4,024,671 - MPMX20_03822 0.50 +0.7 4,024,671 - MPMX20_03822 0.50 +0.8 4,024,684 + MPMX20_03822 0.51 +0.9 4,024,800 - MPMX20_03822 0.66 -0.0 4,024,859 - MPMX20_03822 0.73 -1.0 4,024,866 + MPMX20_03822 0.74 +0.8 4,024,873 - MPMX20_03822 0.75 -1.8 4,024,874 - MPMX20_03822 0.75 +0.4 4,024,874 - MPMX20_03822 0.75 -0.4 4,024,875 - MPMX20_03822 0.75 -1.4 4,024,877 + MPMX20_03822 0.75 -0.4 4,024,877 + MPMX20_03822 0.75 +1.5 4,024,918 - MPMX20_03822 0.80 -0.0 4,024,968 - MPMX20_03822 0.86 -0.2 4,024,968 - MPMX20_03822 0.86 -1.0 4,024,973 - MPMX20_03822 0.87 -0.8 4,024,982 - MPMX20_03822 0.88 +0.5 4,025,135 + MPMX20_03823 0.15 +0.3 4,025,148 - MPMX20_03823 0.17 -0.2 4,025,148 - MPMX20_03823 0.17 +2.6 4,025,179 - MPMX20_03823 0.23 +1.5 4,025,209 + MPMX20_03823 0.28 -2.2 4,025,214 + MPMX20_03823 0.29 -0.3 4,025,217 - MPMX20_03823 0.30 -1.2 4,025,217 - MPMX20_03823 0.30 -0.5 4,025,222 - MPMX20_03823 0.31 -0.6
Or see this region's nucleotide sequence