Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03659

Experiment: 0.1X LB plate, Mixed culture; Chryseobacterium geocarphospharae CO6 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_03658 and MPMX20_03659 overlap by 1 nucleotidesMPMX20_03659 and MPMX20_03660 are separated by 371 nucleotidesMPMX20_03660 and MPMX20_03661 are separated by 15 nucleotides MPMX20_03658: MPMX20_03658 - Glucarate dehydratase-related protein, at 3,852,331 to 3,853,671 _03658 MPMX20_03659: MPMX20_03659 - putative glucarate transporter, at 3,853,671 to 3,855,026 _03659 MPMX20_03660: MPMX20_03660 - hypothetical protein, at 3,855,398 to 3,855,847 _03660 MPMX20_03661: MPMX20_03661 - tRNA pseudouridine synthase C, at 3,855,863 to 3,856,648 _03661 Position (kb) 3853 3854 3855 3856Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6 7 8 9 10 11 12at 3852.673 kb on - strand, within MPMX20_03658at 3852.673 kb on - strand, within MPMX20_03658at 3852.673 kb on - strand, within MPMX20_03658at 3852.686 kb on + strand, within MPMX20_03658at 3852.686 kb on + strand, within MPMX20_03658at 3852.694 kb on - strand, within MPMX20_03658at 3852.694 kb on - strand, within MPMX20_03658at 3852.694 kb on - strand, within MPMX20_03658at 3852.720 kb on - strand, within MPMX20_03658at 3852.804 kb on + strand, within MPMX20_03658at 3852.904 kb on + strand, within MPMX20_03658at 3852.912 kb on - strand, within MPMX20_03658at 3852.935 kb on + strand, within MPMX20_03658at 3852.954 kb on + strand, within MPMX20_03658at 3852.954 kb on + strand, within MPMX20_03658at 3852.954 kb on + strand, within MPMX20_03658at 3852.962 kb on + strand, within MPMX20_03658at 3853.019 kb on + strand, within MPMX20_03658at 3853.146 kb on + strand, within MPMX20_03658at 3853.146 kb on + strand, within MPMX20_03658at 3853.146 kb on + strand, within MPMX20_03658at 3853.154 kb on - strand, within MPMX20_03658at 3853.246 kb on - strand, within MPMX20_03658at 3853.270 kb on - strand, within MPMX20_03658at 3853.272 kb on - strand, within MPMX20_03658at 3853.295 kb on + strand, within MPMX20_03658at 3853.325 kb on - strand, within MPMX20_03658at 3853.378 kb on - strand, within MPMX20_03658at 3853.391 kb on - strand, within MPMX20_03658at 3853.472 kb on + strand, within MPMX20_03658at 3853.480 kb on - strand, within MPMX20_03658at 3853.533 kb on - strand, within MPMX20_03658at 3853.563 kb on + strandat 3853.576 kb on - strandat 3853.639 kb on - strandat 3853.734 kb on + strandat 3853.742 kb on - strandat 3853.742 kb on - strandat 3853.755 kb on + strandat 3853.765 kb on + strandat 3853.780 kb on + strandat 3853.788 kb on - strandat 3853.813 kb on - strand, within MPMX20_03659at 3853.855 kb on + strand, within MPMX20_03659at 3853.855 kb on + strand, within MPMX20_03659at 3853.865 kb on + strand, within MPMX20_03659at 3853.873 kb on - strand, within MPMX20_03659at 3853.873 kb on - strand, within MPMX20_03659at 3853.887 kb on - strand, within MPMX20_03659at 3853.908 kb on - strand, within MPMX20_03659at 3853.920 kb on + strand, within MPMX20_03659at 3853.935 kb on - strand, within MPMX20_03659at 3853.992 kb on - strand, within MPMX20_03659at 3854.011 kb on + strand, within MPMX20_03659at 3854.011 kb on - strand, within MPMX20_03659at 3854.103 kb on + strand, within MPMX20_03659at 3854.146 kb on - strand, within MPMX20_03659at 3854.189 kb on - strand, within MPMX20_03659at 3854.236 kb on + strand, within MPMX20_03659at 3854.345 kb on - strand, within MPMX20_03659at 3854.364 kb on + strand, within MPMX20_03659at 3854.364 kb on + strand, within MPMX20_03659at 3854.429 kb on + strand, within MPMX20_03659at 3854.486 kb on - strand, within MPMX20_03659at 3854.491 kb on - strand, within MPMX20_03659at 3854.547 kb on + strand, within MPMX20_03659at 3854.547 kb on + strand, within MPMX20_03659at 3854.547 kb on + strand, within MPMX20_03659at 3854.555 kb on - strand, within MPMX20_03659at 3854.555 kb on - strand, within MPMX20_03659at 3854.555 kb on - strand, within MPMX20_03659at 3854.581 kb on + strand, within MPMX20_03659at 3854.581 kb on + strand, within MPMX20_03659at 3854.586 kb on + strand, within MPMX20_03659at 3854.586 kb on + strand, within MPMX20_03659at 3854.586 kb on + strand, within MPMX20_03659at 3854.589 kb on - strand, within MPMX20_03659at 3854.594 kb on - strand, within MPMX20_03659at 3854.601 kb on - strand, within MPMX20_03659at 3854.718 kb on + strand, within MPMX20_03659at 3854.727 kb on - strand, within MPMX20_03659at 3854.730 kb on + strand, within MPMX20_03659at 3854.745 kb on + strand, within MPMX20_03659at 3854.745 kb on + strand, within MPMX20_03659at 3854.867 kb on + strand, within MPMX20_03659at 3854.875 kb on - strand, within MPMX20_03659at 3854.912 kb on + strandat 3854.944 kb on + strandat 3854.965 kb on + strandat 3854.968 kb on - strandat 3854.968 kb on - strandat 3854.968 kb on - strandat 3854.968 kb on - strandat 3854.973 kb on - strandat 3854.990 kb on + strandat 3854.990 kb on + strandat 3854.990 kb on + strandat 3854.990 kb on + strandat 3854.990 kb on + strandat 3854.990 kb on + strandat 3854.998 kb on - strandat 3854.998 kb on - strandat 3854.998 kb on - strandat 3854.998 kb on - strandat 3855.011 kb on + strandat 3855.026 kb on + strandat 3855.044 kb on - strandat 3855.049 kb on - strandat 3855.061 kb on + strandat 3855.064 kb on - strandat 3855.066 kb on + strandat 3855.074 kb on - strandat 3855.122 kb on + strandat 3855.132 kb on + strandat 3855.140 kb on - strandat 3855.181 kb on - strandat 3855.189 kb on + strandat 3855.194 kb on + strandat 3855.194 kb on + strandat 3855.202 kb on - strandat 3855.202 kb on - strandat 3855.225 kb on - strandat 3855.254 kb on + strandat 3855.262 kb on - strandat 3855.262 kb on - strandat 3855.262 kb on - strandat 3855.262 kb on - strandat 3855.272 kb on - strandat 3855.409 kb on + strandat 3855.409 kb on + strandat 3855.409 kb on + strandat 3855.419 kb on + strandat 3855.419 kb on + strandat 3855.419 kb on + strandat 3855.427 kb on - strandat 3855.429 kb on - strandat 3855.452 kb on - strand, within MPMX20_03660at 3855.466 kb on - strand, within MPMX20_03660at 3855.564 kb on + strand, within MPMX20_03660at 3855.598 kb on - strand, within MPMX20_03660at 3855.703 kb on - strand, within MPMX20_03660at 3855.758 kb on + strand, within MPMX20_03660at 3855.758 kb on + strand, within MPMX20_03660at 3855.766 kb on - strand, within MPMX20_03660at 3855.786 kb on - strand, within MPMX20_03660at 3855.809 kb on + strandat 3855.809 kb on + strandat 3855.844 kb on - strandat 3855.846 kb on - strandat 3855.882 kb on + strandat 3855.974 kb on + strand, within MPMX20_03661at 3855.982 kb on - strand, within MPMX20_03661

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 0.1X LB plate, Mixed culture; Chryseobacterium geocarphospharae CO6 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
remove
3,852,673 - MPMX20_03658 0.26 -1.9
3,852,673 - MPMX20_03658 0.26 -0.9
3,852,673 - MPMX20_03658 0.26 -0.6
3,852,686 + MPMX20_03658 0.26 +0.3
3,852,686 + MPMX20_03658 0.26 +1.1
3,852,694 - MPMX20_03658 0.27 +1.1
3,852,694 - MPMX20_03658 0.27 -0.6
3,852,694 - MPMX20_03658 0.27 +1.2
3,852,720 - MPMX20_03658 0.29 +0.3
3,852,804 + MPMX20_03658 0.35 +0.5
3,852,904 + MPMX20_03658 0.43 +0.7
3,852,912 - MPMX20_03658 0.43 -1.7
3,852,935 + MPMX20_03658 0.45 -0.1
3,852,954 + MPMX20_03658 0.46 -0.0
3,852,954 + MPMX20_03658 0.46 +2.0
3,852,954 + MPMX20_03658 0.46 -0.9
3,852,962 + MPMX20_03658 0.47 +0.3
3,853,019 + MPMX20_03658 0.51 -1.0
3,853,146 + MPMX20_03658 0.61 +0.7
3,853,146 + MPMX20_03658 0.61 +0.3
3,853,146 + MPMX20_03658 0.61 +2.3
3,853,154 - MPMX20_03658 0.61 +0.1
3,853,246 - MPMX20_03658 0.68 +0.3
3,853,270 - MPMX20_03658 0.70 -0.8
3,853,272 - MPMX20_03658 0.70 -0.3
3,853,295 + MPMX20_03658 0.72 +0.6
3,853,325 - MPMX20_03658 0.74 +2.9
3,853,378 - MPMX20_03658 0.78 -1.3
3,853,391 - MPMX20_03658 0.79 -0.0
3,853,472 + MPMX20_03658 0.85 +0.5
3,853,480 - MPMX20_03658 0.86 +0.1
3,853,533 - MPMX20_03658 0.90 +1.5
3,853,563 + -1.7
3,853,576 - +0.7
3,853,639 - +1.9
3,853,734 + -1.9
3,853,742 - -0.8
3,853,742 - -0.3
3,853,755 + +0.3
3,853,765 + -0.0
3,853,780 + +0.1
3,853,788 - +1.3
3,853,813 - MPMX20_03659 0.10 -0.5
3,853,855 + MPMX20_03659 0.14 -0.2
3,853,855 + MPMX20_03659 0.14 -0.8
3,853,865 + MPMX20_03659 0.14 +1.3
3,853,873 - MPMX20_03659 0.15 -0.8
3,853,873 - MPMX20_03659 0.15 +0.7
3,853,887 - MPMX20_03659 0.16 -2.0
3,853,908 - MPMX20_03659 0.17 -0.3
3,853,920 + MPMX20_03659 0.18 -0.7
3,853,935 - MPMX20_03659 0.19 +1.7
3,853,992 - MPMX20_03659 0.24 -2.0
3,854,011 + MPMX20_03659 0.25 -0.0
3,854,011 - MPMX20_03659 0.25 -0.2
3,854,103 + MPMX20_03659 0.32 +12.0
3,854,146 - MPMX20_03659 0.35 -0.5
3,854,189 - MPMX20_03659 0.38 -0.7
3,854,236 + MPMX20_03659 0.42 -3.2
3,854,345 - MPMX20_03659 0.50 -0.3
3,854,364 + MPMX20_03659 0.51 +1.3
3,854,364 + MPMX20_03659 0.51 -0.7
3,854,429 + MPMX20_03659 0.56 +0.8
3,854,486 - MPMX20_03659 0.60 -0.0
3,854,491 - MPMX20_03659 0.60 -1.8
3,854,547 + MPMX20_03659 0.65 -0.6
3,854,547 + MPMX20_03659 0.65 +3.3
3,854,547 + MPMX20_03659 0.65 -1.4
3,854,555 - MPMX20_03659 0.65 -0.5
3,854,555 - MPMX20_03659 0.65 -0.3
3,854,555 - MPMX20_03659 0.65 -0.2
3,854,581 + MPMX20_03659 0.67 -1.0
3,854,581 + MPMX20_03659 0.67 +0.7
3,854,586 + MPMX20_03659 0.67 -2.4
3,854,586 + MPMX20_03659 0.67 +1.0
3,854,586 + MPMX20_03659 0.67 +1.7
3,854,589 - MPMX20_03659 0.68 -0.0
3,854,594 - MPMX20_03659 0.68 -0.1
3,854,601 - MPMX20_03659 0.69 +0.5
3,854,718 + MPMX20_03659 0.77 +0.8
3,854,727 - MPMX20_03659 0.78 -2.4
3,854,730 + MPMX20_03659 0.78 +0.3
3,854,745 + MPMX20_03659 0.79 +0.4
3,854,745 + MPMX20_03659 0.79 +0.2
3,854,867 + MPMX20_03659 0.88 -0.3
3,854,875 - MPMX20_03659 0.89 -0.4
3,854,912 + +1.3
3,854,944 + -0.0
3,854,965 + -0.6
3,854,968 - +0.2
3,854,968 - -0.3
3,854,968 - +0.2
3,854,968 - -0.3
3,854,973 - -1.7
3,854,990 + -1.6
3,854,990 + +0.1
3,854,990 + -0.2
3,854,990 + +0.5
3,854,990 + +0.4
3,854,990 + +0.7
3,854,998 - +0.9
3,854,998 - -0.9
3,854,998 - +1.3
3,854,998 - -0.2
3,855,011 + -0.1
3,855,026 + -1.9
3,855,044 - -0.5
3,855,049 - +0.2
3,855,061 + +0.0
3,855,064 - +0.4
3,855,066 + +0.1
3,855,074 - +0.2
3,855,122 + -1.9
3,855,132 + -0.7
3,855,140 - -1.2
3,855,181 - -0.4
3,855,189 + -1.1
3,855,194 + -0.0
3,855,194 + +1.3
3,855,202 - +1.0
3,855,202 - -0.5
3,855,225 - -0.6
3,855,254 + -0.7
3,855,262 - -1.2
3,855,262 - +1.3
3,855,262 - -0.4
3,855,262 - +0.3
3,855,272 - -2.0
3,855,409 + +0.5
3,855,409 + +0.6
3,855,409 + -2.2
3,855,419 + -0.4
3,855,419 + -1.4
3,855,419 + +0.0
3,855,427 - +0.4
3,855,429 - +0.5
3,855,452 - MPMX20_03660 0.12 +2.3
3,855,466 - MPMX20_03660 0.15 -0.7
3,855,564 + MPMX20_03660 0.37 +1.7
3,855,598 - MPMX20_03660 0.44 -0.0
3,855,703 - MPMX20_03660 0.68 +0.7
3,855,758 + MPMX20_03660 0.80 -0.7
3,855,758 + MPMX20_03660 0.80 -1.7
3,855,766 - MPMX20_03660 0.82 +0.5
3,855,786 - MPMX20_03660 0.86 -0.5
3,855,809 + -0.6
3,855,809 + -1.0
3,855,844 - -0.8
3,855,846 - -0.3
3,855,882 + -0.1
3,855,974 + MPMX20_03661 0.14 -1.7
3,855,982 - MPMX20_03661 0.15 -1.4

Or see this region's nucleotide sequence