Experiment: 0.1X LB plate, Mixed culture; Chryseobacterium geocarphospharae CO6 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02779 and MPMX20_02780 are separated by 34 nucleotides MPMX20_02780 and MPMX20_02781 are separated by 4 nucleotides
MPMX20_02779: MPMX20_02779 - Arginine--tRNA ligase, at 2,932,603 to 2,934,336
_02779
MPMX20_02780: MPMX20_02780 - Unsaturated rhamnogalacturonyl hydrolase YesR, at 2,934,371 to 2,935,510
_02780
MPMX20_02781: MPMX20_02781 - Putative glycoside/cation symporter YagG, at 2,935,515 to 2,937,098
_02781
Position (kb)
2934
2935
2936 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2934.404 kb on - strand at 2934.411 kb on + strand at 2934.419 kb on - strand at 2934.419 kb on - strand at 2934.419 kb on - strand at 2934.421 kb on + strand at 2934.429 kb on - strand at 2934.429 kb on - strand at 2934.429 kb on - strand at 2934.478 kb on + strand at 2934.486 kb on - strand, within MPMX20_02780 at 2934.559 kb on + strand, within MPMX20_02780 at 2934.578 kb on + strand, within MPMX20_02780 at 2934.586 kb on - strand, within MPMX20_02780 at 2934.642 kb on + strand, within MPMX20_02780 at 2934.650 kb on - strand, within MPMX20_02780 at 2934.667 kb on + strand, within MPMX20_02780 at 2934.667 kb on + strand, within MPMX20_02780 at 2934.741 kb on - strand, within MPMX20_02780 at 2934.820 kb on - strand, within MPMX20_02780 at 2934.926 kb on + strand, within MPMX20_02780 at 2934.940 kb on + strand, within MPMX20_02780 at 2935.045 kb on + strand, within MPMX20_02780 at 2935.097 kb on - strand, within MPMX20_02780 at 2935.155 kb on + strand, within MPMX20_02780 at 2935.177 kb on + strand, within MPMX20_02780 at 2935.215 kb on - strand, within MPMX20_02780 at 2935.273 kb on + strand, within MPMX20_02780 at 2935.283 kb on - strand, within MPMX20_02780 at 2935.293 kb on + strand, within MPMX20_02780 at 2935.301 kb on - strand, within MPMX20_02780 at 2935.301 kb on - strand, within MPMX20_02780 at 2935.301 kb on - strand, within MPMX20_02780 at 2935.303 kb on - strand, within MPMX20_02780 at 2935.303 kb on - strand, within MPMX20_02780 at 2935.319 kb on + strand, within MPMX20_02780 at 2935.327 kb on - strand, within MPMX20_02780 at 2935.343 kb on - strand, within MPMX20_02780 at 2935.391 kb on + strand, within MPMX20_02780 at 2935.394 kb on - strand, within MPMX20_02780 at 2935.485 kb on - strand at 2935.485 kb on - strand at 2935.487 kb on + strand at 2935.487 kb on + strand at 2935.487 kb on + strand at 2935.495 kb on - strand at 2935.495 kb on - strand at 2935.495 kb on - strand at 2935.520 kb on - strand at 2935.520 kb on - strand at 2935.557 kb on - strand at 2935.567 kb on + strand at 2935.609 kb on + strand at 2935.652 kb on - strand at 2935.659 kb on + strand at 2935.667 kb on - strand at 2935.667 kb on - strand at 2935.731 kb on + strand, within MPMX20_02781 at 2935.751 kb on + strand, within MPMX20_02781 at 2935.817 kb on + strand, within MPMX20_02781 at 2935.833 kb on + strand, within MPMX20_02781 at 2935.965 kb on + strand, within MPMX20_02781 at 2936.012 kb on - strand, within MPMX20_02781 at 2936.012 kb on - strand, within MPMX20_02781 at 2936.099 kb on - strand, within MPMX20_02781 at 2936.101 kb on + strand, within MPMX20_02781 at 2936.101 kb on + strand, within MPMX20_02781 at 2936.101 kb on + strand, within MPMX20_02781 at 2936.109 kb on - strand, within MPMX20_02781 at 2936.114 kb on - strand, within MPMX20_02781 at 2936.116 kb on + strand, within MPMX20_02781 at 2936.134 kb on + strand, within MPMX20_02781 at 2936.246 kb on + strand, within MPMX20_02781 at 2936.246 kb on + strand, within MPMX20_02781 at 2936.378 kb on + strand, within MPMX20_02781 at 2936.380 kb on + strand, within MPMX20_02781 at 2936.391 kb on - strand, within MPMX20_02781 at 2936.464 kb on - strand, within MPMX20_02781 at 2936.500 kb on + strand, within MPMX20_02781
Per-strain Table
Position Strand Gene LocusTag Fraction 0.1X LB plate, Mixed culture; Chryseobacterium geocarphospharae CO6 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct remove 2,934,404 - -0.4 2,934,411 + -1.3 2,934,419 - -0.6 2,934,419 - +0.2 2,934,419 - -0.3 2,934,421 + -0.7 2,934,429 - +1.8 2,934,429 - -0.3 2,934,429 - +0.1 2,934,478 + +0.1 2,934,486 - MPMX20_02780 0.10 -0.5 2,934,559 + MPMX20_02780 0.16 -1.6 2,934,578 + MPMX20_02780 0.18 +1.1 2,934,586 - MPMX20_02780 0.19 -0.0 2,934,642 + MPMX20_02780 0.24 -0.2 2,934,650 - MPMX20_02780 0.24 +1.3 2,934,667 + MPMX20_02780 0.26 -0.6 2,934,667 + MPMX20_02780 0.26 -0.3 2,934,741 - MPMX20_02780 0.32 -2.4 2,934,820 - MPMX20_02780 0.39 +0.1 2,934,926 + MPMX20_02780 0.49 +2.3 2,934,940 + MPMX20_02780 0.50 +0.3 2,935,045 + MPMX20_02780 0.59 +0.3 2,935,097 - MPMX20_02780 0.64 -1.2 2,935,155 + MPMX20_02780 0.69 +1.2 2,935,177 + MPMX20_02780 0.71 -2.2 2,935,215 - MPMX20_02780 0.74 -1.1 2,935,273 + MPMX20_02780 0.79 -0.9 2,935,283 - MPMX20_02780 0.80 +1.3 2,935,293 + MPMX20_02780 0.81 +0.1 2,935,301 - MPMX20_02780 0.82 -1.5 2,935,301 - MPMX20_02780 0.82 +1.0 2,935,301 - MPMX20_02780 0.82 +0.9 2,935,303 - MPMX20_02780 0.82 +1.7 2,935,303 - MPMX20_02780 0.82 -0.9 2,935,319 + MPMX20_02780 0.83 -0.6 2,935,327 - MPMX20_02780 0.84 +0.6 2,935,343 - MPMX20_02780 0.85 -0.7 2,935,391 + MPMX20_02780 0.89 -0.8 2,935,394 - MPMX20_02780 0.90 +0.6 2,935,485 - -1.0 2,935,485 - +1.3 2,935,487 + -0.7 2,935,487 + -1.4 2,935,487 + +1.6 2,935,495 - -1.2 2,935,495 - -0.3 2,935,495 - +0.4 2,935,520 - +0.1 2,935,520 - -0.5 2,935,557 - +1.3 2,935,567 + -1.5 2,935,609 + +0.3 2,935,652 - -0.3 2,935,659 + +0.1 2,935,667 - -0.3 2,935,667 - -0.4 2,935,731 + MPMX20_02781 0.14 -1.4 2,935,751 + MPMX20_02781 0.15 -1.4 2,935,817 + MPMX20_02781 0.19 -0.7 2,935,833 + MPMX20_02781 0.20 -0.6 2,935,965 + MPMX20_02781 0.28 -0.8 2,936,012 - MPMX20_02781 0.31 -1.7 2,936,012 - MPMX20_02781 0.31 -0.3 2,936,099 - MPMX20_02781 0.37 +0.3 2,936,101 + MPMX20_02781 0.37 -0.7 2,936,101 + MPMX20_02781 0.37 +0.5 2,936,101 + MPMX20_02781 0.37 -0.2 2,936,109 - MPMX20_02781 0.38 -0.4 2,936,114 - MPMX20_02781 0.38 -1.1 2,936,116 + MPMX20_02781 0.38 +0.7 2,936,134 + MPMX20_02781 0.39 -0.9 2,936,246 + MPMX20_02781 0.46 -0.0 2,936,246 + MPMX20_02781 0.46 -0.0 2,936,378 + MPMX20_02781 0.54 +0.2 2,936,380 + MPMX20_02781 0.55 +0.2 2,936,391 - MPMX20_02781 0.55 -0.5 2,936,464 - MPMX20_02781 0.60 -0.4 2,936,500 + MPMX20_02781 0.62 -0.3
Or see this region's nucleotide sequence