Experiment: 0.1X LB plate, Mixed culture; Chryseobacterium geocarphospharae CO6 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02694 and MPMX20_02695 are separated by 37 nucleotides MPMX20_02695 and MPMX20_02696 are separated by 107 nucleotides MPMX20_02696 and MPMX20_02697 are separated by 96 nucleotides
MPMX20_02694: MPMX20_02694 - Flagellar brake protein YcgR, at 2,847,628 to 2,848,359
_02694
MPMX20_02695: MPMX20_02695 - Endo-type membrane-bound lytic murein transglycosylase A, at 2,848,397 to 2,849,008
_02695
MPMX20_02696: MPMX20_02696 - Murein tetrapeptide carboxypeptidase, at 2,849,116 to 2,850,030
_02696
MPMX20_02697: MPMX20_02697 - K(+)/H(+) antiporter NhaP2, at 2,850,127 to 2,851,860
_02697
Position (kb)
2849
2850
2851 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 2848.116 kb on + strand, within MPMX20_02694 at 2848.116 kb on + strand, within MPMX20_02694 at 2848.116 kb on + strand, within MPMX20_02694 at 2848.149 kb on + strand, within MPMX20_02694 at 2848.157 kb on - strand, within MPMX20_02694 at 2848.157 kb on - strand, within MPMX20_02694 at 2848.157 kb on - strand, within MPMX20_02694 at 2848.157 kb on - strand, within MPMX20_02694 at 2848.196 kb on - strand, within MPMX20_02694 at 2848.206 kb on + strand, within MPMX20_02694 at 2848.213 kb on - strand, within MPMX20_02694 at 2848.297 kb on - strand at 2848.336 kb on - strand at 2848.338 kb on - strand at 2848.338 kb on - strand at 2848.339 kb on - strand at 2848.389 kb on - strand at 2848.500 kb on + strand, within MPMX20_02695 at 2848.542 kb on + strand, within MPMX20_02695 at 2848.550 kb on - strand, within MPMX20_02695 at 2848.600 kb on + strand, within MPMX20_02695 at 2848.608 kb on - strand, within MPMX20_02695 at 2848.730 kb on - strand, within MPMX20_02695 at 2848.763 kb on - strand, within MPMX20_02695 at 2848.765 kb on + strand, within MPMX20_02695 at 2848.779 kb on - strand, within MPMX20_02695 at 2848.865 kb on - strand, within MPMX20_02695 at 2848.903 kb on - strand, within MPMX20_02695 at 2848.958 kb on + strand at 2849.035 kb on + strand at 2849.070 kb on - strand at 2849.116 kb on - strand at 2849.145 kb on + strand at 2849.171 kb on - strand at 2849.301 kb on + strand, within MPMX20_02696 at 2849.340 kb on + strand, within MPMX20_02696 at 2849.357 kb on + strand, within MPMX20_02696 at 2849.365 kb on - strand, within MPMX20_02696 at 2849.377 kb on - strand, within MPMX20_02696 at 2849.384 kb on + strand, within MPMX20_02696 at 2849.384 kb on + strand, within MPMX20_02696 at 2849.392 kb on - strand, within MPMX20_02696 at 2849.458 kb on - strand, within MPMX20_02696 at 2849.492 kb on + strand, within MPMX20_02696 at 2849.500 kb on - strand, within MPMX20_02696 at 2849.500 kb on - strand, within MPMX20_02696 at 2849.500 kb on - strand, within MPMX20_02696 at 2849.666 kb on + strand, within MPMX20_02696 at 2849.688 kb on + strand, within MPMX20_02696 at 2849.728 kb on + strand, within MPMX20_02696 at 2849.741 kb on - strand, within MPMX20_02696 at 2849.768 kb on - strand, within MPMX20_02696 at 2849.936 kb on + strand, within MPMX20_02696 at 2849.942 kb on + strand at 2849.954 kb on + strand at 2850.005 kb on + strand at 2850.059 kb on + strand at 2850.114 kb on + strand at 2850.114 kb on + strand at 2850.116 kb on - strand at 2850.122 kb on - strand at 2850.122 kb on - strand at 2850.122 kb on - strand at 2850.122 kb on - strand at 2850.122 kb on - strand at 2850.139 kb on + strand at 2850.147 kb on - strand at 2850.164 kb on + strand at 2850.164 kb on + strand at 2850.164 kb on + strand at 2850.180 kb on - strand at 2850.316 kb on + strand, within MPMX20_02697 at 2850.318 kb on + strand, within MPMX20_02697 at 2850.326 kb on - strand, within MPMX20_02697 at 2850.326 kb on - strand, within MPMX20_02697 at 2850.373 kb on + strand, within MPMX20_02697 at 2850.373 kb on + strand, within MPMX20_02697 at 2850.377 kb on - strand, within MPMX20_02697 at 2850.388 kb on + strand, within MPMX20_02697 at 2850.434 kb on + strand, within MPMX20_02697 at 2850.434 kb on + strand, within MPMX20_02697 at 2850.506 kb on - strand, within MPMX20_02697 at 2850.567 kb on - strand, within MPMX20_02697 at 2850.650 kb on - strand, within MPMX20_02697 at 2850.668 kb on - strand, within MPMX20_02697 at 2850.668 kb on - strand, within MPMX20_02697 at 2850.678 kb on - strand, within MPMX20_02697 at 2850.789 kb on + strand, within MPMX20_02697 at 2850.797 kb on - strand, within MPMX20_02697 at 2850.797 kb on - strand, within MPMX20_02697 at 2850.797 kb on - strand, within MPMX20_02697 at 2850.797 kb on - strand, within MPMX20_02697 at 2850.869 kb on + strand, within MPMX20_02697 at 2850.916 kb on + strand, within MPMX20_02697 at 2850.948 kb on + strand, within MPMX20_02697 at 2850.948 kb on + strand, within MPMX20_02697 at 2850.948 kb on + strand, within MPMX20_02697 at 2850.948 kb on + strand, within MPMX20_02697 at 2850.956 kb on - strand, within MPMX20_02697 at 2850.956 kb on - strand, within MPMX20_02697 at 2850.956 kb on - strand, within MPMX20_02697 at 2850.956 kb on - strand, within MPMX20_02697 at 2850.956 kb on - strand, within MPMX20_02697 at 2850.974 kb on + strand, within MPMX20_02697 at 2850.974 kb on + strand, within MPMX20_02697 at 2851.001 kb on + strand, within MPMX20_02697 at 2851.014 kb on + strand, within MPMX20_02697 at 2851.030 kb on + strand, within MPMX20_02697
Per-strain Table
Position Strand Gene LocusTag Fraction 0.1X LB plate, Mixed culture; Chryseobacterium geocarphospharae CO6 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct remove 2,848,116 + MPMX20_02694 0.67 +0.2 2,848,116 + MPMX20_02694 0.67 +0.4 2,848,116 + MPMX20_02694 0.67 -0.7 2,848,149 + MPMX20_02694 0.71 -1.5 2,848,157 - MPMX20_02694 0.72 +0.6 2,848,157 - MPMX20_02694 0.72 +0.0 2,848,157 - MPMX20_02694 0.72 -0.8 2,848,157 - MPMX20_02694 0.72 +2.8 2,848,196 - MPMX20_02694 0.78 -1.4 2,848,206 + MPMX20_02694 0.79 -0.6 2,848,213 - MPMX20_02694 0.80 +0.1 2,848,297 - +1.1 2,848,336 - +0.2 2,848,338 - -0.3 2,848,338 - +0.4 2,848,339 - -0.2 2,848,389 - -0.4 2,848,500 + MPMX20_02695 0.17 +0.2 2,848,542 + MPMX20_02695 0.24 -0.8 2,848,550 - MPMX20_02695 0.25 +1.1 2,848,600 + MPMX20_02695 0.33 -0.9 2,848,608 - MPMX20_02695 0.34 -1.0 2,848,730 - MPMX20_02695 0.54 +0.8 2,848,763 - MPMX20_02695 0.60 +0.4 2,848,765 + MPMX20_02695 0.60 +0.4 2,848,779 - MPMX20_02695 0.62 -1.1 2,848,865 - MPMX20_02695 0.76 -0.7 2,848,903 - MPMX20_02695 0.83 -0.4 2,848,958 + +0.4 2,849,035 + +0.2 2,849,070 - +1.2 2,849,116 - -1.8 2,849,145 + -4.0 2,849,171 - -3.9 2,849,301 + MPMX20_02696 0.20 -2.7 2,849,340 + MPMX20_02696 0.24 -2.1 2,849,357 + MPMX20_02696 0.26 -2.4 2,849,365 - MPMX20_02696 0.27 -2.9 2,849,377 - MPMX20_02696 0.29 -4.3 2,849,384 + MPMX20_02696 0.29 -3.2 2,849,384 + MPMX20_02696 0.29 -3.7 2,849,392 - MPMX20_02696 0.30 -4.3 2,849,458 - MPMX20_02696 0.37 -2.3 2,849,492 + MPMX20_02696 0.41 -3.3 2,849,500 - MPMX20_02696 0.42 -2.8 2,849,500 - MPMX20_02696 0.42 -3.2 2,849,500 - MPMX20_02696 0.42 -3.4 2,849,666 + MPMX20_02696 0.60 -3.1 2,849,688 + MPMX20_02696 0.63 +0.2 2,849,728 + MPMX20_02696 0.67 -2.4 2,849,741 - MPMX20_02696 0.68 -3.3 2,849,768 - MPMX20_02696 0.71 -0.8 2,849,936 + MPMX20_02696 0.90 -2.5 2,849,942 + -3.3 2,849,954 + -2.1 2,850,005 + +0.5 2,850,059 + -0.6 2,850,114 + -1.8 2,850,114 + -1.7 2,850,116 - -0.7 2,850,122 - -0.9 2,850,122 - -1.3 2,850,122 - -0.6 2,850,122 - +0.1 2,850,122 - -1.6 2,850,139 + +0.7 2,850,147 - -0.8 2,850,164 + -2.2 2,850,164 + -0.8 2,850,164 + -0.0 2,850,180 - -1.7 2,850,316 + MPMX20_02697 0.11 -0.8 2,850,318 + MPMX20_02697 0.11 -0.6 2,850,326 - MPMX20_02697 0.11 +1.2 2,850,326 - MPMX20_02697 0.11 +0.9 2,850,373 + MPMX20_02697 0.14 -0.9 2,850,373 + MPMX20_02697 0.14 +0.3 2,850,377 - MPMX20_02697 0.14 -1.4 2,850,388 + MPMX20_02697 0.15 -0.4 2,850,434 + MPMX20_02697 0.18 -1.1 2,850,434 + MPMX20_02697 0.18 -0.1 2,850,506 - MPMX20_02697 0.22 +1.0 2,850,567 - MPMX20_02697 0.25 +1.5 2,850,650 - MPMX20_02697 0.30 -0.5 2,850,668 - MPMX20_02697 0.31 +1.2 2,850,668 - MPMX20_02697 0.31 +1.0 2,850,678 - MPMX20_02697 0.32 +2.5 2,850,789 + MPMX20_02697 0.38 -0.2 2,850,797 - MPMX20_02697 0.39 -0.1 2,850,797 - MPMX20_02697 0.39 +0.1 2,850,797 - MPMX20_02697 0.39 -1.2 2,850,797 - MPMX20_02697 0.39 -0.1 2,850,869 + MPMX20_02697 0.43 +0.5 2,850,916 + MPMX20_02697 0.46 -0.8 2,850,948 + MPMX20_02697 0.47 +0.4 2,850,948 + MPMX20_02697 0.47 +0.7 2,850,948 + MPMX20_02697 0.47 -0.1 2,850,948 + MPMX20_02697 0.47 -0.3 2,850,956 - MPMX20_02697 0.48 +0.6 2,850,956 - MPMX20_02697 0.48 -0.8 2,850,956 - MPMX20_02697 0.48 -1.1 2,850,956 - MPMX20_02697 0.48 +1.5 2,850,956 - MPMX20_02697 0.48 -0.2 2,850,974 + MPMX20_02697 0.49 +0.5 2,850,974 + MPMX20_02697 0.49 -1.3 2,851,001 + MPMX20_02697 0.50 +0.1 2,851,014 + MPMX20_02697 0.51 -0.2 2,851,030 + MPMX20_02697 0.52 -0.7
Or see this region's nucleotide sequence