Experiment: 0.1X LB plate, Mixed culture; Chryseobacterium geocarphospharae CO6 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02079 and MPMX20_02080 overlap by 4 nucleotides MPMX20_02080 and MPMX20_02081 are separated by 18 nucleotides MPMX20_02081 and MPMX20_02082 are separated by 42 nucleotides
MPMX20_02079: MPMX20_02079 - D-alanine--D-alanine ligase, at 2,171,095 to 2,174,697
_02079
MPMX20_02080: MPMX20_02080 - Allophanate hydrolase, at 2,174,694 to 2,176,493
_02080
MPMX20_02081: MPMX20_02081 - Tat proofreading chaperone DmsD, at 2,176,512 to 2,177,126
_02081
MPMX20_02082: MPMX20_02082 - Anaerobic dimethyl sulfoxide reductase chain C, at 2,177,169 to 2,178,023
_02082
Position (kb)
2174
2175
2176
2177 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 2173.731 kb on - strand, within MPMX20_02079 at 2173.762 kb on - strand, within MPMX20_02079 at 2173.765 kb on + strand, within MPMX20_02079 at 2173.788 kb on - strand, within MPMX20_02079 at 2173.820 kb on - strand, within MPMX20_02079 at 2173.834 kb on + strand, within MPMX20_02079 at 2173.842 kb on - strand, within MPMX20_02079 at 2173.860 kb on - strand, within MPMX20_02079 at 2173.861 kb on - strand, within MPMX20_02079 at 2173.910 kb on - strand, within MPMX20_02079 at 2174.028 kb on + strand, within MPMX20_02079 at 2174.071 kb on - strand, within MPMX20_02079 at 2174.089 kb on - strand, within MPMX20_02079 at 2174.101 kb on - strand, within MPMX20_02079 at 2174.133 kb on - strand, within MPMX20_02079 at 2174.172 kb on + strand, within MPMX20_02079 at 2174.172 kb on + strand, within MPMX20_02079 at 2174.221 kb on + strand, within MPMX20_02079 at 2174.222 kb on - strand, within MPMX20_02079 at 2174.284 kb on - strand, within MPMX20_02079 at 2174.373 kb on + strand at 2174.399 kb on - strand at 2174.399 kb on - strand at 2174.525 kb on - strand at 2174.532 kb on + strand at 2174.532 kb on + strand at 2174.743 kb on + strand at 2174.743 kb on - strand at 2174.756 kb on - strand at 2174.756 kb on - strand at 2174.758 kb on + strand at 2174.839 kb on + strand at 2174.839 kb on + strand at 2174.839 kb on + strand at 2174.839 kb on + strand at 2174.847 kb on - strand at 2174.847 kb on - strand at 2174.994 kb on - strand, within MPMX20_02080 at 2175.050 kb on + strand, within MPMX20_02080 at 2175.083 kb on - strand, within MPMX20_02080 at 2175.183 kb on - strand, within MPMX20_02080 at 2175.256 kb on + strand, within MPMX20_02080 at 2175.281 kb on - strand, within MPMX20_02080 at 2175.410 kb on + strand, within MPMX20_02080 at 2175.521 kb on + strand, within MPMX20_02080 at 2175.616 kb on - strand, within MPMX20_02080 at 2175.627 kb on - strand, within MPMX20_02080 at 2175.681 kb on + strand, within MPMX20_02080 at 2175.683 kb on + strand, within MPMX20_02080 at 2175.752 kb on + strand, within MPMX20_02080 at 2175.760 kb on - strand, within MPMX20_02080 at 2175.760 kb on - strand, within MPMX20_02080 at 2175.767 kb on + strand, within MPMX20_02080 at 2175.767 kb on + strand, within MPMX20_02080 at 2175.767 kb on + strand, within MPMX20_02080 at 2175.767 kb on + strand, within MPMX20_02080 at 2175.767 kb on + strand, within MPMX20_02080 at 2175.775 kb on - strand, within MPMX20_02080 at 2175.775 kb on - strand, within MPMX20_02080 at 2175.775 kb on - strand, within MPMX20_02080 at 2175.775 kb on - strand, within MPMX20_02080 at 2175.989 kb on - strand, within MPMX20_02080 at 2175.989 kb on - strand, within MPMX20_02080 at 2176.082 kb on - strand, within MPMX20_02080 at 2176.084 kb on - strand, within MPMX20_02080 at 2176.091 kb on + strand, within MPMX20_02080 at 2176.104 kb on + strand, within MPMX20_02080 at 2176.112 kb on - strand, within MPMX20_02080 at 2176.112 kb on - strand, within MPMX20_02080 at 2176.127 kb on + strand, within MPMX20_02080 at 2176.140 kb on + strand, within MPMX20_02080 at 2176.148 kb on - strand, within MPMX20_02080 at 2176.148 kb on - strand, within MPMX20_02080 at 2176.164 kb on + strand, within MPMX20_02080 at 2176.183 kb on + strand, within MPMX20_02080 at 2176.215 kb on + strand, within MPMX20_02080 at 2176.253 kb on + strand, within MPMX20_02080 at 2176.283 kb on - strand, within MPMX20_02080 at 2176.311 kb on + strand, within MPMX20_02080 at 2176.319 kb on - strand at 2176.425 kb on + strand at 2176.427 kb on + strand at 2176.433 kb on - strand at 2176.433 kb on - strand at 2176.497 kb on + strand at 2176.500 kb on - strand at 2176.503 kb on + strand at 2176.505 kb on - strand at 2176.511 kb on - strand at 2176.563 kb on + strand at 2176.578 kb on + strand, within MPMX20_02081 at 2176.585 kb on + strand, within MPMX20_02081 at 2176.600 kb on + strand, within MPMX20_02081 at 2176.600 kb on + strand, within MPMX20_02081 at 2176.603 kb on - strand, within MPMX20_02081 at 2176.608 kb on - strand, within MPMX20_02081 at 2176.651 kb on + strand, within MPMX20_02081 at 2176.809 kb on - strand, within MPMX20_02081 at 2176.809 kb on - strand, within MPMX20_02081 at 2176.817 kb on + strand, within MPMX20_02081 at 2176.817 kb on + strand, within MPMX20_02081 at 2176.825 kb on - strand, within MPMX20_02081 at 2176.873 kb on + strand, within MPMX20_02081 at 2176.873 kb on + strand, within MPMX20_02081 at 2176.881 kb on - strand, within MPMX20_02081 at 2176.893 kb on - strand, within MPMX20_02081 at 2176.992 kb on + strand, within MPMX20_02081 at 2177.000 kb on - strand, within MPMX20_02081 at 2177.008 kb on + strand, within MPMX20_02081 at 2177.028 kb on - strand, within MPMX20_02081 at 2177.086 kb on - strand at 2177.166 kb on + strand at 2177.166 kb on + strand at 2177.166 kb on + strand at 2177.196 kb on - strand at 2177.199 kb on + strand at 2177.398 kb on + strand, within MPMX20_02082 at 2177.425 kb on - strand, within MPMX20_02082 at 2177.451 kb on + strand, within MPMX20_02082 at 2177.451 kb on + strand, within MPMX20_02082 at 2177.451 kb on + strand, within MPMX20_02082 at 2177.451 kb on + strand, within MPMX20_02082 at 2177.451 kb on + strand, within MPMX20_02082 at 2177.451 kb on + strand, within MPMX20_02082 at 2177.451 kb on + strand, within MPMX20_02082 at 2177.451 kb on + strand, within MPMX20_02082 at 2177.459 kb on - strand, within MPMX20_02082 at 2177.459 kb on - strand, within MPMX20_02082 at 2177.459 kb on - strand, within MPMX20_02082 at 2177.459 kb on - strand, within MPMX20_02082 at 2177.459 kb on - strand, within MPMX20_02082
Per-strain Table
Position Strand Gene LocusTag Fraction 0.1X LB plate, Mixed culture; Chryseobacterium geocarphospharae CO6 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct remove 2,173,731 - MPMX20_02079 0.73 +0.4 2,173,762 - MPMX20_02079 0.74 -0.6 2,173,765 + MPMX20_02079 0.74 -0.1 2,173,788 - MPMX20_02079 0.75 -0.8 2,173,820 - MPMX20_02079 0.76 +0.4 2,173,834 + MPMX20_02079 0.76 -0.6 2,173,842 - MPMX20_02079 0.76 -1.7 2,173,860 - MPMX20_02079 0.77 +0.0 2,173,861 - MPMX20_02079 0.77 -1.1 2,173,910 - MPMX20_02079 0.78 -1.1 2,174,028 + MPMX20_02079 0.81 -0.6 2,174,071 - MPMX20_02079 0.83 -1.1 2,174,089 - MPMX20_02079 0.83 -1.0 2,174,101 - MPMX20_02079 0.83 -0.4 2,174,133 - MPMX20_02079 0.84 -0.5 2,174,172 + MPMX20_02079 0.85 -1.0 2,174,172 + MPMX20_02079 0.85 -0.9 2,174,221 + MPMX20_02079 0.87 -2.2 2,174,222 - MPMX20_02079 0.87 -0.0 2,174,284 - MPMX20_02079 0.89 +0.9 2,174,373 + +0.6 2,174,399 - +1.0 2,174,399 - +0.4 2,174,525 - +1.4 2,174,532 + -0.3 2,174,532 + -1.8 2,174,743 + +0.2 2,174,743 - -1.8 2,174,756 - +0.3 2,174,756 - -1.5 2,174,758 + -0.1 2,174,839 + -1.1 2,174,839 + -1.9 2,174,839 + -1.3 2,174,839 + -0.3 2,174,847 - -0.3 2,174,847 - +0.4 2,174,994 - MPMX20_02080 0.17 -0.6 2,175,050 + MPMX20_02080 0.20 +0.9 2,175,083 - MPMX20_02080 0.22 +0.5 2,175,183 - MPMX20_02080 0.27 -1.1 2,175,256 + MPMX20_02080 0.31 +0.4 2,175,281 - MPMX20_02080 0.33 +0.0 2,175,410 + MPMX20_02080 0.40 -0.3 2,175,521 + MPMX20_02080 0.46 -0.6 2,175,616 - MPMX20_02080 0.51 -0.5 2,175,627 - MPMX20_02080 0.52 -0.6 2,175,681 + MPMX20_02080 0.55 -0.2 2,175,683 + MPMX20_02080 0.55 -0.7 2,175,752 + MPMX20_02080 0.59 -0.1 2,175,760 - MPMX20_02080 0.59 +1.2 2,175,760 - MPMX20_02080 0.59 -1.0 2,175,767 + MPMX20_02080 0.60 -0.1 2,175,767 + MPMX20_02080 0.60 -0.6 2,175,767 + MPMX20_02080 0.60 +1.6 2,175,767 + MPMX20_02080 0.60 +1.1 2,175,767 + MPMX20_02080 0.60 -1.1 2,175,775 - MPMX20_02080 0.60 -0.5 2,175,775 - MPMX20_02080 0.60 +0.3 2,175,775 - MPMX20_02080 0.60 -2.2 2,175,775 - MPMX20_02080 0.60 -1.7 2,175,989 - MPMX20_02080 0.72 +0.6 2,175,989 - MPMX20_02080 0.72 -0.2 2,176,082 - MPMX20_02080 0.77 -0.4 2,176,084 - MPMX20_02080 0.77 -0.1 2,176,091 + MPMX20_02080 0.78 +0.9 2,176,104 + MPMX20_02080 0.78 -1.1 2,176,112 - MPMX20_02080 0.79 +0.2 2,176,112 - MPMX20_02080 0.79 -0.1 2,176,127 + MPMX20_02080 0.80 +0.2 2,176,140 + MPMX20_02080 0.80 -1.3 2,176,148 - MPMX20_02080 0.81 -1.8 2,176,148 - MPMX20_02080 0.81 -0.6 2,176,164 + MPMX20_02080 0.82 -1.2 2,176,183 + MPMX20_02080 0.83 -1.7 2,176,215 + MPMX20_02080 0.84 -0.4 2,176,253 + MPMX20_02080 0.87 +0.2 2,176,283 - MPMX20_02080 0.88 +0.0 2,176,311 + MPMX20_02080 0.90 +0.2 2,176,319 - +0.1 2,176,425 + -0.6 2,176,427 + -0.6 2,176,433 - +0.2 2,176,433 - -1.1 2,176,497 + +0.6 2,176,500 - -0.5 2,176,503 + -0.7 2,176,505 - -1.3 2,176,511 - +1.6 2,176,563 + -0.4 2,176,578 + MPMX20_02081 0.11 -1.4 2,176,585 + MPMX20_02081 0.12 -2.4 2,176,600 + MPMX20_02081 0.14 -1.5 2,176,600 + MPMX20_02081 0.14 -1.0 2,176,603 - MPMX20_02081 0.15 +1.2 2,176,608 - MPMX20_02081 0.16 +0.8 2,176,651 + MPMX20_02081 0.23 -0.8 2,176,809 - MPMX20_02081 0.48 -1.7 2,176,809 - MPMX20_02081 0.48 -1.2 2,176,817 + MPMX20_02081 0.50 -0.1 2,176,817 + MPMX20_02081 0.50 -0.7 2,176,825 - MPMX20_02081 0.51 -1.4 2,176,873 + MPMX20_02081 0.59 -1.0 2,176,873 + MPMX20_02081 0.59 -1.4 2,176,881 - MPMX20_02081 0.60 -1.1 2,176,893 - MPMX20_02081 0.62 -0.5 2,176,992 + MPMX20_02081 0.78 -0.8 2,177,000 - MPMX20_02081 0.79 -1.0 2,177,008 + MPMX20_02081 0.81 +0.4 2,177,028 - MPMX20_02081 0.84 -0.1 2,177,086 - +1.2 2,177,166 + -0.2 2,177,166 + +0.6 2,177,166 + -1.3 2,177,196 - -0.6 2,177,199 + +0.0 2,177,398 + MPMX20_02082 0.27 -0.6 2,177,425 - MPMX20_02082 0.30 +0.4 2,177,451 + MPMX20_02082 0.33 -0.3 2,177,451 + MPMX20_02082 0.33 +1.2 2,177,451 + MPMX20_02082 0.33 -4.1 2,177,451 + MPMX20_02082 0.33 -1.3 2,177,451 + MPMX20_02082 0.33 -0.9 2,177,451 + MPMX20_02082 0.33 -0.2 2,177,451 + MPMX20_02082 0.33 +0.2 2,177,451 + MPMX20_02082 0.33 +0.6 2,177,459 - MPMX20_02082 0.34 -0.8 2,177,459 - MPMX20_02082 0.34 -1.0 2,177,459 - MPMX20_02082 0.34 -0.3 2,177,459 - MPMX20_02082 0.34 +0.9 2,177,459 - MPMX20_02082 0.34 -0.6
Or see this region's nucleotide sequence