Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_02080

Experiment: 0.1X LB plate, Mixed culture; Chryseobacterium geocarphospharae CO6 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_02079 and MPMX20_02080 overlap by 4 nucleotidesMPMX20_02080 and MPMX20_02081 are separated by 18 nucleotidesMPMX20_02081 and MPMX20_02082 are separated by 42 nucleotides MPMX20_02079: MPMX20_02079 - D-alanine--D-alanine ligase, at 2,171,095 to 2,174,697 _02079 MPMX20_02080: MPMX20_02080 - Allophanate hydrolase, at 2,174,694 to 2,176,493 _02080 MPMX20_02081: MPMX20_02081 - Tat proofreading chaperone DmsD, at 2,176,512 to 2,177,126 _02081 MPMX20_02082: MPMX20_02082 - Anaerobic dimethyl sulfoxide reductase chain C, at 2,177,169 to 2,178,023 _02082 Position (kb) 2174 2175 2176 2177Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2173.731 kb on - strand, within MPMX20_02079at 2173.762 kb on - strand, within MPMX20_02079at 2173.765 kb on + strand, within MPMX20_02079at 2173.788 kb on - strand, within MPMX20_02079at 2173.820 kb on - strand, within MPMX20_02079at 2173.834 kb on + strand, within MPMX20_02079at 2173.842 kb on - strand, within MPMX20_02079at 2173.860 kb on - strand, within MPMX20_02079at 2173.861 kb on - strand, within MPMX20_02079at 2173.910 kb on - strand, within MPMX20_02079at 2174.028 kb on + strand, within MPMX20_02079at 2174.071 kb on - strand, within MPMX20_02079at 2174.089 kb on - strand, within MPMX20_02079at 2174.101 kb on - strand, within MPMX20_02079at 2174.133 kb on - strand, within MPMX20_02079at 2174.172 kb on + strand, within MPMX20_02079at 2174.172 kb on + strand, within MPMX20_02079at 2174.221 kb on + strand, within MPMX20_02079at 2174.222 kb on - strand, within MPMX20_02079at 2174.284 kb on - strand, within MPMX20_02079at 2174.373 kb on + strandat 2174.399 kb on - strandat 2174.399 kb on - strandat 2174.525 kb on - strandat 2174.532 kb on + strandat 2174.532 kb on + strandat 2174.743 kb on + strandat 2174.743 kb on - strandat 2174.756 kb on - strandat 2174.756 kb on - strandat 2174.758 kb on + strandat 2174.839 kb on + strandat 2174.839 kb on + strandat 2174.839 kb on + strandat 2174.839 kb on + strandat 2174.847 kb on - strandat 2174.847 kb on - strandat 2174.994 kb on - strand, within MPMX20_02080at 2175.050 kb on + strand, within MPMX20_02080at 2175.083 kb on - strand, within MPMX20_02080at 2175.183 kb on - strand, within MPMX20_02080at 2175.256 kb on + strand, within MPMX20_02080at 2175.281 kb on - strand, within MPMX20_02080at 2175.410 kb on + strand, within MPMX20_02080at 2175.521 kb on + strand, within MPMX20_02080at 2175.616 kb on - strand, within MPMX20_02080at 2175.627 kb on - strand, within MPMX20_02080at 2175.681 kb on + strand, within MPMX20_02080at 2175.683 kb on + strand, within MPMX20_02080at 2175.752 kb on + strand, within MPMX20_02080at 2175.760 kb on - strand, within MPMX20_02080at 2175.760 kb on - strand, within MPMX20_02080at 2175.767 kb on + strand, within MPMX20_02080at 2175.767 kb on + strand, within MPMX20_02080at 2175.767 kb on + strand, within MPMX20_02080at 2175.767 kb on + strand, within MPMX20_02080at 2175.767 kb on + strand, within MPMX20_02080at 2175.775 kb on - strand, within MPMX20_02080at 2175.775 kb on - strand, within MPMX20_02080at 2175.775 kb on - strand, within MPMX20_02080at 2175.775 kb on - strand, within MPMX20_02080at 2175.989 kb on - strand, within MPMX20_02080at 2175.989 kb on - strand, within MPMX20_02080at 2176.082 kb on - strand, within MPMX20_02080at 2176.084 kb on - strand, within MPMX20_02080at 2176.091 kb on + strand, within MPMX20_02080at 2176.104 kb on + strand, within MPMX20_02080at 2176.112 kb on - strand, within MPMX20_02080at 2176.112 kb on - strand, within MPMX20_02080at 2176.127 kb on + strand, within MPMX20_02080at 2176.140 kb on + strand, within MPMX20_02080at 2176.148 kb on - strand, within MPMX20_02080at 2176.148 kb on - strand, within MPMX20_02080at 2176.164 kb on + strand, within MPMX20_02080at 2176.183 kb on + strand, within MPMX20_02080at 2176.215 kb on + strand, within MPMX20_02080at 2176.253 kb on + strand, within MPMX20_02080at 2176.283 kb on - strand, within MPMX20_02080at 2176.311 kb on + strand, within MPMX20_02080at 2176.319 kb on - strandat 2176.425 kb on + strandat 2176.427 kb on + strandat 2176.433 kb on - strandat 2176.433 kb on - strandat 2176.497 kb on + strandat 2176.500 kb on - strandat 2176.503 kb on + strandat 2176.505 kb on - strandat 2176.511 kb on - strandat 2176.563 kb on + strandat 2176.578 kb on + strand, within MPMX20_02081at 2176.585 kb on + strand, within MPMX20_02081at 2176.600 kb on + strand, within MPMX20_02081at 2176.600 kb on + strand, within MPMX20_02081at 2176.603 kb on - strand, within MPMX20_02081at 2176.608 kb on - strand, within MPMX20_02081at 2176.651 kb on + strand, within MPMX20_02081at 2176.809 kb on - strand, within MPMX20_02081at 2176.809 kb on - strand, within MPMX20_02081at 2176.817 kb on + strand, within MPMX20_02081at 2176.817 kb on + strand, within MPMX20_02081at 2176.825 kb on - strand, within MPMX20_02081at 2176.873 kb on + strand, within MPMX20_02081at 2176.873 kb on + strand, within MPMX20_02081at 2176.881 kb on - strand, within MPMX20_02081at 2176.893 kb on - strand, within MPMX20_02081at 2176.992 kb on + strand, within MPMX20_02081at 2177.000 kb on - strand, within MPMX20_02081at 2177.008 kb on + strand, within MPMX20_02081at 2177.028 kb on - strand, within MPMX20_02081at 2177.086 kb on - strandat 2177.166 kb on + strandat 2177.166 kb on + strandat 2177.166 kb on + strandat 2177.196 kb on - strandat 2177.199 kb on + strandat 2177.398 kb on + strand, within MPMX20_02082at 2177.425 kb on - strand, within MPMX20_02082at 2177.451 kb on + strand, within MPMX20_02082at 2177.451 kb on + strand, within MPMX20_02082at 2177.451 kb on + strand, within MPMX20_02082at 2177.451 kb on + strand, within MPMX20_02082at 2177.451 kb on + strand, within MPMX20_02082at 2177.451 kb on + strand, within MPMX20_02082at 2177.451 kb on + strand, within MPMX20_02082at 2177.451 kb on + strand, within MPMX20_02082at 2177.459 kb on - strand, within MPMX20_02082at 2177.459 kb on - strand, within MPMX20_02082at 2177.459 kb on - strand, within MPMX20_02082at 2177.459 kb on - strand, within MPMX20_02082at 2177.459 kb on - strand, within MPMX20_02082

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Per-strain Table

Position Strand Gene LocusTag Fraction 0.1X LB plate, Mixed culture; Chryseobacterium geocarphospharae CO6 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
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2,173,731 - MPMX20_02079 0.73 +0.4
2,173,762 - MPMX20_02079 0.74 -0.6
2,173,765 + MPMX20_02079 0.74 -0.1
2,173,788 - MPMX20_02079 0.75 -0.8
2,173,820 - MPMX20_02079 0.76 +0.4
2,173,834 + MPMX20_02079 0.76 -0.6
2,173,842 - MPMX20_02079 0.76 -1.7
2,173,860 - MPMX20_02079 0.77 +0.0
2,173,861 - MPMX20_02079 0.77 -1.1
2,173,910 - MPMX20_02079 0.78 -1.1
2,174,028 + MPMX20_02079 0.81 -0.6
2,174,071 - MPMX20_02079 0.83 -1.1
2,174,089 - MPMX20_02079 0.83 -1.0
2,174,101 - MPMX20_02079 0.83 -0.4
2,174,133 - MPMX20_02079 0.84 -0.5
2,174,172 + MPMX20_02079 0.85 -1.0
2,174,172 + MPMX20_02079 0.85 -0.9
2,174,221 + MPMX20_02079 0.87 -2.2
2,174,222 - MPMX20_02079 0.87 -0.0
2,174,284 - MPMX20_02079 0.89 +0.9
2,174,373 + +0.6
2,174,399 - +1.0
2,174,399 - +0.4
2,174,525 - +1.4
2,174,532 + -0.3
2,174,532 + -1.8
2,174,743 + +0.2
2,174,743 - -1.8
2,174,756 - +0.3
2,174,756 - -1.5
2,174,758 + -0.1
2,174,839 + -1.1
2,174,839 + -1.9
2,174,839 + -1.3
2,174,839 + -0.3
2,174,847 - -0.3
2,174,847 - +0.4
2,174,994 - MPMX20_02080 0.17 -0.6
2,175,050 + MPMX20_02080 0.20 +0.9
2,175,083 - MPMX20_02080 0.22 +0.5
2,175,183 - MPMX20_02080 0.27 -1.1
2,175,256 + MPMX20_02080 0.31 +0.4
2,175,281 - MPMX20_02080 0.33 +0.0
2,175,410 + MPMX20_02080 0.40 -0.3
2,175,521 + MPMX20_02080 0.46 -0.6
2,175,616 - MPMX20_02080 0.51 -0.5
2,175,627 - MPMX20_02080 0.52 -0.6
2,175,681 + MPMX20_02080 0.55 -0.2
2,175,683 + MPMX20_02080 0.55 -0.7
2,175,752 + MPMX20_02080 0.59 -0.1
2,175,760 - MPMX20_02080 0.59 +1.2
2,175,760 - MPMX20_02080 0.59 -1.0
2,175,767 + MPMX20_02080 0.60 -0.1
2,175,767 + MPMX20_02080 0.60 -0.6
2,175,767 + MPMX20_02080 0.60 +1.6
2,175,767 + MPMX20_02080 0.60 +1.1
2,175,767 + MPMX20_02080 0.60 -1.1
2,175,775 - MPMX20_02080 0.60 -0.5
2,175,775 - MPMX20_02080 0.60 +0.3
2,175,775 - MPMX20_02080 0.60 -2.2
2,175,775 - MPMX20_02080 0.60 -1.7
2,175,989 - MPMX20_02080 0.72 +0.6
2,175,989 - MPMX20_02080 0.72 -0.2
2,176,082 - MPMX20_02080 0.77 -0.4
2,176,084 - MPMX20_02080 0.77 -0.1
2,176,091 + MPMX20_02080 0.78 +0.9
2,176,104 + MPMX20_02080 0.78 -1.1
2,176,112 - MPMX20_02080 0.79 +0.2
2,176,112 - MPMX20_02080 0.79 -0.1
2,176,127 + MPMX20_02080 0.80 +0.2
2,176,140 + MPMX20_02080 0.80 -1.3
2,176,148 - MPMX20_02080 0.81 -1.8
2,176,148 - MPMX20_02080 0.81 -0.6
2,176,164 + MPMX20_02080 0.82 -1.2
2,176,183 + MPMX20_02080 0.83 -1.7
2,176,215 + MPMX20_02080 0.84 -0.4
2,176,253 + MPMX20_02080 0.87 +0.2
2,176,283 - MPMX20_02080 0.88 +0.0
2,176,311 + MPMX20_02080 0.90 +0.2
2,176,319 - +0.1
2,176,425 + -0.6
2,176,427 + -0.6
2,176,433 - +0.2
2,176,433 - -1.1
2,176,497 + +0.6
2,176,500 - -0.5
2,176,503 + -0.7
2,176,505 - -1.3
2,176,511 - +1.6
2,176,563 + -0.4
2,176,578 + MPMX20_02081 0.11 -1.4
2,176,585 + MPMX20_02081 0.12 -2.4
2,176,600 + MPMX20_02081 0.14 -1.5
2,176,600 + MPMX20_02081 0.14 -1.0
2,176,603 - MPMX20_02081 0.15 +1.2
2,176,608 - MPMX20_02081 0.16 +0.8
2,176,651 + MPMX20_02081 0.23 -0.8
2,176,809 - MPMX20_02081 0.48 -1.7
2,176,809 - MPMX20_02081 0.48 -1.2
2,176,817 + MPMX20_02081 0.50 -0.1
2,176,817 + MPMX20_02081 0.50 -0.7
2,176,825 - MPMX20_02081 0.51 -1.4
2,176,873 + MPMX20_02081 0.59 -1.0
2,176,873 + MPMX20_02081 0.59 -1.4
2,176,881 - MPMX20_02081 0.60 -1.1
2,176,893 - MPMX20_02081 0.62 -0.5
2,176,992 + MPMX20_02081 0.78 -0.8
2,177,000 - MPMX20_02081 0.79 -1.0
2,177,008 + MPMX20_02081 0.81 +0.4
2,177,028 - MPMX20_02081 0.84 -0.1
2,177,086 - +1.2
2,177,166 + -0.2
2,177,166 + +0.6
2,177,166 + -1.3
2,177,196 - -0.6
2,177,199 + +0.0
2,177,398 + MPMX20_02082 0.27 -0.6
2,177,425 - MPMX20_02082 0.30 +0.4
2,177,451 + MPMX20_02082 0.33 -0.3
2,177,451 + MPMX20_02082 0.33 +1.2
2,177,451 + MPMX20_02082 0.33 -4.1
2,177,451 + MPMX20_02082 0.33 -1.3
2,177,451 + MPMX20_02082 0.33 -0.9
2,177,451 + MPMX20_02082 0.33 -0.2
2,177,451 + MPMX20_02082 0.33 +0.2
2,177,451 + MPMX20_02082 0.33 +0.6
2,177,459 - MPMX20_02082 0.34 -0.8
2,177,459 - MPMX20_02082 0.34 -1.0
2,177,459 - MPMX20_02082 0.34 -0.3
2,177,459 - MPMX20_02082 0.34 +0.9
2,177,459 - MPMX20_02082 0.34 -0.6

Or see this region's nucleotide sequence