Experiment: 0.1X LB plate, Mixed culture; Chryseobacterium geocarphospharae CO6 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01862 and MPMX20_01863 are separated by 6 nucleotides MPMX20_01863 and MPMX20_01864 are separated by 30 nucleotides MPMX20_01864 and MPMX20_01865 are separated by 433 nucleotides
MPMX20_01862: MPMX20_01862 - Protein YnjB, at 1,955,815 to 1,956,984
_01862
MPMX20_01863: MPMX20_01863 - hypothetical protein, at 1,956,991 to 1,957,650
_01863
MPMX20_01864: MPMX20_01864 - Exodeoxyribonuclease III, at 1,957,681 to 1,958,487
_01864
MPMX20_01865: MPMX20_01865 - Succinylornithine transaminase, at 1,958,921 to 1,960,141
_01865
Position (kb)
1957
1958
1959 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5 at 1956.685 kb on - strand, within MPMX20_01862 at 1956.751 kb on - strand, within MPMX20_01862 at 1956.769 kb on - strand, within MPMX20_01862 at 1956.780 kb on + strand, within MPMX20_01862 at 1956.803 kb on + strand, within MPMX20_01862 at 1956.815 kb on + strand, within MPMX20_01862 at 1956.830 kb on + strand, within MPMX20_01862 at 1956.960 kb on - strand at 1957.059 kb on + strand, within MPMX20_01863 at 1957.059 kb on - strand, within MPMX20_01863 at 1957.141 kb on + strand, within MPMX20_01863 at 1957.159 kb on - strand, within MPMX20_01863 at 1957.204 kb on + strand, within MPMX20_01863 at 1957.204 kb on + strand, within MPMX20_01863 at 1957.212 kb on - strand, within MPMX20_01863 at 1957.212 kb on - strand, within MPMX20_01863 at 1957.241 kb on + strand, within MPMX20_01863 at 1957.296 kb on - strand, within MPMX20_01863 at 1957.315 kb on - strand, within MPMX20_01863 at 1957.353 kb on + strand, within MPMX20_01863 at 1957.389 kb on + strand, within MPMX20_01863 at 1957.418 kb on + strand, within MPMX20_01863 at 1957.480 kb on - strand, within MPMX20_01863 at 1957.489 kb on + strand, within MPMX20_01863 at 1957.489 kb on + strand, within MPMX20_01863 at 1957.626 kb on - strand at 1957.626 kb on - strand at 1957.631 kb on - strand at 1957.641 kb on - strand at 1957.641 kb on - strand at 1957.678 kb on + strand at 1957.678 kb on + strand at 1957.678 kb on + strand at 1957.795 kb on + strand, within MPMX20_01864 at 1957.808 kb on - strand, within MPMX20_01864 at 1957.905 kb on + strand, within MPMX20_01864 at 1957.952 kb on + strand, within MPMX20_01864 at 1957.995 kb on + strand, within MPMX20_01864 at 1958.035 kb on - strand, within MPMX20_01864 at 1958.143 kb on + strand, within MPMX20_01864 at 1958.151 kb on - strand, within MPMX20_01864 at 1958.151 kb on - strand, within MPMX20_01864 at 1958.154 kb on + strand, within MPMX20_01864 at 1958.289 kb on - strand, within MPMX20_01864 at 1958.302 kb on - strand, within MPMX20_01864 at 1958.307 kb on - strand, within MPMX20_01864 at 1958.330 kb on + strand, within MPMX20_01864 at 1958.338 kb on - strand, within MPMX20_01864 at 1958.352 kb on + strand, within MPMX20_01864 at 1958.367 kb on - strand, within MPMX20_01864 at 1958.370 kb on - strand, within MPMX20_01864 at 1958.370 kb on - strand, within MPMX20_01864 at 1958.388 kb on + strand, within MPMX20_01864 at 1958.388 kb on + strand, within MPMX20_01864 at 1958.398 kb on + strand, within MPMX20_01864 at 1958.408 kb on + strand at 1958.429 kb on + strand at 1958.523 kb on - strand at 1958.543 kb on + strand at 1958.545 kb on + strand at 1958.551 kb on - strand at 1958.553 kb on - strand at 1958.553 kb on - strand at 1958.603 kb on + strand at 1958.618 kb on + strand at 1958.627 kb on - strand at 1958.639 kb on - strand at 1958.808 kb on - strand at 1958.843 kb on + strand at 1959.009 kb on + strand at 1959.009 kb on + strand at 1959.009 kb on + strand at 1959.009 kb on + strand at 1959.009 kb on + strand at 1959.017 kb on - strand at 1959.017 kb on - strand at 1959.023 kb on + strand at 1959.087 kb on - strand, within MPMX20_01865 at 1959.089 kb on + strand, within MPMX20_01865 at 1959.089 kb on + strand, within MPMX20_01865 at 1959.089 kb on - strand, within MPMX20_01865 at 1959.091 kb on + strand, within MPMX20_01865 at 1959.103 kb on - strand, within MPMX20_01865 at 1959.108 kb on - strand, within MPMX20_01865 at 1959.167 kb on + strand, within MPMX20_01865 at 1959.167 kb on + strand, within MPMX20_01865 at 1959.195 kb on + strand, within MPMX20_01865 at 1959.254 kb on + strand, within MPMX20_01865 at 1959.254 kb on + strand, within MPMX20_01865 at 1959.262 kb on - strand, within MPMX20_01865 at 1959.262 kb on - strand, within MPMX20_01865 at 1959.309 kb on + strand, within MPMX20_01865 at 1959.309 kb on + strand, within MPMX20_01865 at 1959.312 kb on - strand, within MPMX20_01865 at 1959.317 kb on - strand, within MPMX20_01865 at 1959.476 kb on - strand, within MPMX20_01865
Per-strain Table
Position Strand Gene LocusTag Fraction 0.1X LB plate, Mixed culture; Chryseobacterium geocarphospharae CO6 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct remove 1,956,685 - MPMX20_01862 0.74 -0.3 1,956,751 - MPMX20_01862 0.80 -0.3 1,956,769 - MPMX20_01862 0.82 +1.2 1,956,780 + MPMX20_01862 0.82 +0.9 1,956,803 + MPMX20_01862 0.84 -0.1 1,956,815 + MPMX20_01862 0.85 +1.5 1,956,830 + MPMX20_01862 0.87 -0.9 1,956,960 - -0.4 1,957,059 + MPMX20_01863 0.10 -0.4 1,957,059 - MPMX20_01863 0.10 -0.8 1,957,141 + MPMX20_01863 0.23 -0.4 1,957,159 - MPMX20_01863 0.25 -1.1 1,957,204 + MPMX20_01863 0.32 -0.8 1,957,204 + MPMX20_01863 0.32 +0.1 1,957,212 - MPMX20_01863 0.33 +0.1 1,957,212 - MPMX20_01863 0.33 -0.5 1,957,241 + MPMX20_01863 0.38 +0.3 1,957,296 - MPMX20_01863 0.46 +0.6 1,957,315 - MPMX20_01863 0.49 -1.6 1,957,353 + MPMX20_01863 0.55 +0.9 1,957,389 + MPMX20_01863 0.60 -0.5 1,957,418 + MPMX20_01863 0.65 -0.9 1,957,480 - MPMX20_01863 0.74 +1.1 1,957,489 + MPMX20_01863 0.75 -0.8 1,957,489 + MPMX20_01863 0.75 -1.4 1,957,626 - -1.4 1,957,626 - -1.6 1,957,631 - -0.4 1,957,641 - -1.4 1,957,641 - -1.2 1,957,678 + +0.3 1,957,678 + -0.3 1,957,678 + -0.2 1,957,795 + MPMX20_01864 0.14 -1.3 1,957,808 - MPMX20_01864 0.16 +0.9 1,957,905 + MPMX20_01864 0.28 -1.1 1,957,952 + MPMX20_01864 0.34 +0.9 1,957,995 + MPMX20_01864 0.39 -1.8 1,958,035 - MPMX20_01864 0.44 +0.3 1,958,143 + MPMX20_01864 0.57 -0.6 1,958,151 - MPMX20_01864 0.58 -0.5 1,958,151 - MPMX20_01864 0.58 +5.7 1,958,154 + MPMX20_01864 0.59 +0.1 1,958,289 - MPMX20_01864 0.75 +0.5 1,958,302 - MPMX20_01864 0.77 -1.1 1,958,307 - MPMX20_01864 0.78 -1.5 1,958,330 + MPMX20_01864 0.80 +2.2 1,958,338 - MPMX20_01864 0.81 +0.5 1,958,352 + MPMX20_01864 0.83 +1.4 1,958,367 - MPMX20_01864 0.85 +0.2 1,958,370 - MPMX20_01864 0.85 -0.6 1,958,370 - MPMX20_01864 0.85 +1.2 1,958,388 + MPMX20_01864 0.88 +3.8 1,958,388 + MPMX20_01864 0.88 +0.9 1,958,398 + MPMX20_01864 0.89 -1.5 1,958,408 + -0.8 1,958,429 + +0.1 1,958,523 - -0.1 1,958,543 + +1.0 1,958,545 + -1.6 1,958,551 - +0.3 1,958,553 - +1.2 1,958,553 - +0.1 1,958,603 + -1.2 1,958,618 + +0.9 1,958,627 - +0.1 1,958,639 - -1.2 1,958,808 - -0.7 1,958,843 + -0.9 1,959,009 + -2.9 1,959,009 + +1.6 1,959,009 + -2.2 1,959,009 + -0.8 1,959,009 + -2.9 1,959,017 - -3.4 1,959,017 - -0.6 1,959,023 + +0.1 1,959,087 - MPMX20_01865 0.14 -0.4 1,959,089 + MPMX20_01865 0.14 -1.1 1,959,089 + MPMX20_01865 0.14 -1.8 1,959,089 - MPMX20_01865 0.14 -2.6 1,959,091 + MPMX20_01865 0.14 -2.8 1,959,103 - MPMX20_01865 0.15 -1.5 1,959,108 - MPMX20_01865 0.15 -1.6 1,959,167 + MPMX20_01865 0.20 -2.3 1,959,167 + MPMX20_01865 0.20 -0.8 1,959,195 + MPMX20_01865 0.22 -1.1 1,959,254 + MPMX20_01865 0.27 -1.2 1,959,254 + MPMX20_01865 0.27 -1.5 1,959,262 - MPMX20_01865 0.28 -3.2 1,959,262 - MPMX20_01865 0.28 -2.4 1,959,309 + MPMX20_01865 0.32 -1.5 1,959,309 + MPMX20_01865 0.32 -0.4 1,959,312 - MPMX20_01865 0.32 +0.2 1,959,317 - MPMX20_01865 0.32 -1.4 1,959,476 - MPMX20_01865 0.45 -0.4
Or see this region's nucleotide sequence