Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01864

Experiment: 0.1X LB plate, Mixed culture; Chryseobacterium geocarphospharae CO6 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01862 and MPMX20_01863 are separated by 6 nucleotidesMPMX20_01863 and MPMX20_01864 are separated by 30 nucleotidesMPMX20_01864 and MPMX20_01865 are separated by 433 nucleotides MPMX20_01862: MPMX20_01862 - Protein YnjB, at 1,955,815 to 1,956,984 _01862 MPMX20_01863: MPMX20_01863 - hypothetical protein, at 1,956,991 to 1,957,650 _01863 MPMX20_01864: MPMX20_01864 - Exodeoxyribonuclease III, at 1,957,681 to 1,958,487 _01864 MPMX20_01865: MPMX20_01865 - Succinylornithine transaminase, at 1,958,921 to 1,960,141 _01865 Position (kb) 1957 1958 1959Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 1956.685 kb on - strand, within MPMX20_01862at 1956.751 kb on - strand, within MPMX20_01862at 1956.769 kb on - strand, within MPMX20_01862at 1956.780 kb on + strand, within MPMX20_01862at 1956.803 kb on + strand, within MPMX20_01862at 1956.815 kb on + strand, within MPMX20_01862at 1956.830 kb on + strand, within MPMX20_01862at 1956.960 kb on - strandat 1957.059 kb on + strand, within MPMX20_01863at 1957.059 kb on - strand, within MPMX20_01863at 1957.141 kb on + strand, within MPMX20_01863at 1957.159 kb on - strand, within MPMX20_01863at 1957.204 kb on + strand, within MPMX20_01863at 1957.204 kb on + strand, within MPMX20_01863at 1957.212 kb on - strand, within MPMX20_01863at 1957.212 kb on - strand, within MPMX20_01863at 1957.241 kb on + strand, within MPMX20_01863at 1957.296 kb on - strand, within MPMX20_01863at 1957.315 kb on - strand, within MPMX20_01863at 1957.353 kb on + strand, within MPMX20_01863at 1957.389 kb on + strand, within MPMX20_01863at 1957.418 kb on + strand, within MPMX20_01863at 1957.480 kb on - strand, within MPMX20_01863at 1957.489 kb on + strand, within MPMX20_01863at 1957.489 kb on + strand, within MPMX20_01863at 1957.626 kb on - strandat 1957.626 kb on - strandat 1957.631 kb on - strandat 1957.641 kb on - strandat 1957.641 kb on - strandat 1957.678 kb on + strandat 1957.678 kb on + strandat 1957.678 kb on + strandat 1957.795 kb on + strand, within MPMX20_01864at 1957.808 kb on - strand, within MPMX20_01864at 1957.905 kb on + strand, within MPMX20_01864at 1957.952 kb on + strand, within MPMX20_01864at 1957.995 kb on + strand, within MPMX20_01864at 1958.035 kb on - strand, within MPMX20_01864at 1958.143 kb on + strand, within MPMX20_01864at 1958.151 kb on - strand, within MPMX20_01864at 1958.151 kb on - strand, within MPMX20_01864at 1958.154 kb on + strand, within MPMX20_01864at 1958.289 kb on - strand, within MPMX20_01864at 1958.302 kb on - strand, within MPMX20_01864at 1958.307 kb on - strand, within MPMX20_01864at 1958.330 kb on + strand, within MPMX20_01864at 1958.338 kb on - strand, within MPMX20_01864at 1958.352 kb on + strand, within MPMX20_01864at 1958.367 kb on - strand, within MPMX20_01864at 1958.370 kb on - strand, within MPMX20_01864at 1958.370 kb on - strand, within MPMX20_01864at 1958.388 kb on + strand, within MPMX20_01864at 1958.388 kb on + strand, within MPMX20_01864at 1958.398 kb on + strand, within MPMX20_01864at 1958.408 kb on + strandat 1958.429 kb on + strandat 1958.523 kb on - strandat 1958.543 kb on + strandat 1958.545 kb on + strandat 1958.551 kb on - strandat 1958.553 kb on - strandat 1958.553 kb on - strandat 1958.603 kb on + strandat 1958.618 kb on + strandat 1958.627 kb on - strandat 1958.639 kb on - strandat 1958.808 kb on - strandat 1958.843 kb on + strandat 1959.009 kb on + strandat 1959.009 kb on + strandat 1959.009 kb on + strandat 1959.009 kb on + strandat 1959.009 kb on + strandat 1959.017 kb on - strandat 1959.017 kb on - strandat 1959.023 kb on + strandat 1959.087 kb on - strand, within MPMX20_01865at 1959.089 kb on + strand, within MPMX20_01865at 1959.089 kb on + strand, within MPMX20_01865at 1959.089 kb on - strand, within MPMX20_01865at 1959.091 kb on + strand, within MPMX20_01865at 1959.103 kb on - strand, within MPMX20_01865at 1959.108 kb on - strand, within MPMX20_01865at 1959.167 kb on + strand, within MPMX20_01865at 1959.167 kb on + strand, within MPMX20_01865at 1959.195 kb on + strand, within MPMX20_01865at 1959.254 kb on + strand, within MPMX20_01865at 1959.254 kb on + strand, within MPMX20_01865at 1959.262 kb on - strand, within MPMX20_01865at 1959.262 kb on - strand, within MPMX20_01865at 1959.309 kb on + strand, within MPMX20_01865at 1959.309 kb on + strand, within MPMX20_01865at 1959.312 kb on - strand, within MPMX20_01865at 1959.317 kb on - strand, within MPMX20_01865at 1959.476 kb on - strand, within MPMX20_01865

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Per-strain Table

Position Strand Gene LocusTag Fraction 0.1X LB plate, Mixed culture; Chryseobacterium geocarphospharae CO6 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
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1,956,685 - MPMX20_01862 0.74 -0.3
1,956,751 - MPMX20_01862 0.80 -0.3
1,956,769 - MPMX20_01862 0.82 +1.2
1,956,780 + MPMX20_01862 0.82 +0.9
1,956,803 + MPMX20_01862 0.84 -0.1
1,956,815 + MPMX20_01862 0.85 +1.5
1,956,830 + MPMX20_01862 0.87 -0.9
1,956,960 - -0.4
1,957,059 + MPMX20_01863 0.10 -0.4
1,957,059 - MPMX20_01863 0.10 -0.8
1,957,141 + MPMX20_01863 0.23 -0.4
1,957,159 - MPMX20_01863 0.25 -1.1
1,957,204 + MPMX20_01863 0.32 -0.8
1,957,204 + MPMX20_01863 0.32 +0.1
1,957,212 - MPMX20_01863 0.33 +0.1
1,957,212 - MPMX20_01863 0.33 -0.5
1,957,241 + MPMX20_01863 0.38 +0.3
1,957,296 - MPMX20_01863 0.46 +0.6
1,957,315 - MPMX20_01863 0.49 -1.6
1,957,353 + MPMX20_01863 0.55 +0.9
1,957,389 + MPMX20_01863 0.60 -0.5
1,957,418 + MPMX20_01863 0.65 -0.9
1,957,480 - MPMX20_01863 0.74 +1.1
1,957,489 + MPMX20_01863 0.75 -0.8
1,957,489 + MPMX20_01863 0.75 -1.4
1,957,626 - -1.4
1,957,626 - -1.6
1,957,631 - -0.4
1,957,641 - -1.4
1,957,641 - -1.2
1,957,678 + +0.3
1,957,678 + -0.3
1,957,678 + -0.2
1,957,795 + MPMX20_01864 0.14 -1.3
1,957,808 - MPMX20_01864 0.16 +0.9
1,957,905 + MPMX20_01864 0.28 -1.1
1,957,952 + MPMX20_01864 0.34 +0.9
1,957,995 + MPMX20_01864 0.39 -1.8
1,958,035 - MPMX20_01864 0.44 +0.3
1,958,143 + MPMX20_01864 0.57 -0.6
1,958,151 - MPMX20_01864 0.58 -0.5
1,958,151 - MPMX20_01864 0.58 +5.7
1,958,154 + MPMX20_01864 0.59 +0.1
1,958,289 - MPMX20_01864 0.75 +0.5
1,958,302 - MPMX20_01864 0.77 -1.1
1,958,307 - MPMX20_01864 0.78 -1.5
1,958,330 + MPMX20_01864 0.80 +2.2
1,958,338 - MPMX20_01864 0.81 +0.5
1,958,352 + MPMX20_01864 0.83 +1.4
1,958,367 - MPMX20_01864 0.85 +0.2
1,958,370 - MPMX20_01864 0.85 -0.6
1,958,370 - MPMX20_01864 0.85 +1.2
1,958,388 + MPMX20_01864 0.88 +3.8
1,958,388 + MPMX20_01864 0.88 +0.9
1,958,398 + MPMX20_01864 0.89 -1.5
1,958,408 + -0.8
1,958,429 + +0.1
1,958,523 - -0.1
1,958,543 + +1.0
1,958,545 + -1.6
1,958,551 - +0.3
1,958,553 - +1.2
1,958,553 - +0.1
1,958,603 + -1.2
1,958,618 + +0.9
1,958,627 - +0.1
1,958,639 - -1.2
1,958,808 - -0.7
1,958,843 + -0.9
1,959,009 + -2.9
1,959,009 + +1.6
1,959,009 + -2.2
1,959,009 + -0.8
1,959,009 + -2.9
1,959,017 - -3.4
1,959,017 - -0.6
1,959,023 + +0.1
1,959,087 - MPMX20_01865 0.14 -0.4
1,959,089 + MPMX20_01865 0.14 -1.1
1,959,089 + MPMX20_01865 0.14 -1.8
1,959,089 - MPMX20_01865 0.14 -2.6
1,959,091 + MPMX20_01865 0.14 -2.8
1,959,103 - MPMX20_01865 0.15 -1.5
1,959,108 - MPMX20_01865 0.15 -1.6
1,959,167 + MPMX20_01865 0.20 -2.3
1,959,167 + MPMX20_01865 0.20 -0.8
1,959,195 + MPMX20_01865 0.22 -1.1
1,959,254 + MPMX20_01865 0.27 -1.2
1,959,254 + MPMX20_01865 0.27 -1.5
1,959,262 - MPMX20_01865 0.28 -3.2
1,959,262 - MPMX20_01865 0.28 -2.4
1,959,309 + MPMX20_01865 0.32 -1.5
1,959,309 + MPMX20_01865 0.32 -0.4
1,959,312 - MPMX20_01865 0.32 +0.2
1,959,317 - MPMX20_01865 0.32 -1.4
1,959,476 - MPMX20_01865 0.45 -0.4

Or see this region's nucleotide sequence