Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00056

Experiment: 0.1X LB plate, Mixed culture; Chryseobacterium geocarphospharae CO6 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00054 and MPMX20_00055 are separated by 27 nucleotidesMPMX20_00055 and MPMX20_00056 are separated by 131 nucleotidesMPMX20_00056 and MPMX20_00057 overlap by 1 nucleotides MPMX20_00054: MPMX20_00054 - Catabolite control protein A, at 53,510 to 54,460 _00054 MPMX20_00055: MPMX20_00055 - hypothetical protein, at 54,488 to 54,784 _00055 MPMX20_00056: MPMX20_00056 - Outer membrane protein OprM, at 54,916 to 56,280 _00056 MPMX20_00057: MPMX20_00057 - Multidrug resistance protein MexB, at 56,280 to 59,390 _00057 Position (kb) 54 55 56 57Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 53.930 kb on - strand, within MPMX20_00054at 53.930 kb on - strand, within MPMX20_00054at 53.933 kb on - strand, within MPMX20_00054at 54.002 kb on + strand, within MPMX20_00054at 54.023 kb on + strand, within MPMX20_00054at 54.023 kb on + strand, within MPMX20_00054at 54.023 kb on + strand, within MPMX20_00054at 54.023 kb on + strand, within MPMX20_00054at 54.023 kb on + strand, within MPMX20_00054at 54.023 kb on + strand, within MPMX20_00054at 54.026 kb on - strand, within MPMX20_00054at 54.031 kb on - strand, within MPMX20_00054at 54.073 kb on - strand, within MPMX20_00054at 54.139 kb on + strand, within MPMX20_00054at 54.155 kb on + strand, within MPMX20_00054at 54.174 kb on - strand, within MPMX20_00054at 54.233 kb on + strand, within MPMX20_00054at 54.276 kb on + strand, within MPMX20_00054at 54.284 kb on - strand, within MPMX20_00054at 54.285 kb on - strand, within MPMX20_00054at 54.292 kb on - strand, within MPMX20_00054at 54.403 kb on + strandat 54.409 kb on + strandat 54.411 kb on + strandat 54.411 kb on + strandat 54.419 kb on - strandat 54.419 kb on - strandat 54.419 kb on - strandat 54.428 kb on + strandat 54.479 kb on + strandat 54.551 kb on + strand, within MPMX20_00055at 54.559 kb on - strand, within MPMX20_00055at 54.656 kb on - strand, within MPMX20_00055at 54.656 kb on - strand, within MPMX20_00055at 54.656 kb on - strand, within MPMX20_00055at 54.656 kb on - strand, within MPMX20_00055at 54.659 kb on + strand, within MPMX20_00055at 54.727 kb on + strand, within MPMX20_00055at 54.755 kb on - strandat 54.760 kb on + strandat 54.768 kb on - strandat 54.769 kb on + strandat 54.772 kb on - strandat 54.801 kb on + strandat 54.801 kb on + strandat 54.801 kb on + strandat 54.846 kb on - strandat 54.925 kb on - strandat 54.926 kb on + strandat 54.937 kb on - strandat 54.948 kb on + strandat 54.983 kb on - strandat 54.983 kb on - strandat 55.001 kb on + strandat 55.002 kb on - strandat 55.006 kb on + strandat 55.056 kb on + strand, within MPMX20_00056at 55.056 kb on + strand, within MPMX20_00056at 55.064 kb on - strand, within MPMX20_00056at 55.064 kb on - strand, within MPMX20_00056at 55.064 kb on - strand, within MPMX20_00056at 55.227 kb on + strand, within MPMX20_00056at 55.270 kb on - strand, within MPMX20_00056at 55.270 kb on - strand, within MPMX20_00056at 55.272 kb on + strand, within MPMX20_00056at 55.279 kb on + strand, within MPMX20_00056at 55.288 kb on - strand, within MPMX20_00056at 55.290 kb on - strand, within MPMX20_00056at 55.323 kb on + strand, within MPMX20_00056at 55.400 kb on + strand, within MPMX20_00056at 55.467 kb on + strand, within MPMX20_00056at 55.530 kb on - strand, within MPMX20_00056at 55.630 kb on + strand, within MPMX20_00056at 55.701 kb on + strand, within MPMX20_00056at 55.729 kb on + strand, within MPMX20_00056at 55.739 kb on + strand, within MPMX20_00056at 55.875 kb on + strand, within MPMX20_00056at 55.886 kb on + strand, within MPMX20_00056at 55.909 kb on + strand, within MPMX20_00056at 55.909 kb on + strand, within MPMX20_00056at 55.922 kb on + strand, within MPMX20_00056at 55.967 kb on - strand, within MPMX20_00056at 55.977 kb on + strand, within MPMX20_00056at 55.978 kb on + strand, within MPMX20_00056at 56.010 kb on - strand, within MPMX20_00056at 56.029 kb on - strand, within MPMX20_00056at 56.209 kb on + strandat 56.229 kb on + strandat 56.230 kb on + strandat 56.234 kb on + strandat 56.253 kb on - strandat 56.257 kb on + strandat 56.257 kb on + strandat 56.257 kb on + strandat 56.265 kb on - strandat 56.342 kb on - strandat 56.423 kb on - strandat 56.423 kb on - strandat 56.423 kb on - strandat 56.447 kb on + strandat 56.447 kb on + strandat 56.455 kb on - strandat 56.493 kb on - strandat 56.507 kb on - strandat 56.507 kb on - strandat 56.514 kb on - strandat 56.605 kb on + strand, within MPMX20_00057at 56.671 kb on + strand, within MPMX20_00057at 56.681 kb on + strand, within MPMX20_00057at 56.714 kb on + strand, within MPMX20_00057at 56.733 kb on - strand, within MPMX20_00057at 56.761 kb on + strand, within MPMX20_00057at 56.840 kb on - strand, within MPMX20_00057at 56.882 kb on - strand, within MPMX20_00057at 56.905 kb on + strand, within MPMX20_00057at 56.970 kb on - strand, within MPMX20_00057at 57.008 kb on + strand, within MPMX20_00057at 57.016 kb on - strand, within MPMX20_00057at 57.040 kb on + strand, within MPMX20_00057at 57.150 kb on - strand, within MPMX20_00057at 57.158 kb on + strand, within MPMX20_00057at 57.179 kb on + strand, within MPMX20_00057at 57.192 kb on - strand, within MPMX20_00057at 57.207 kb on - strand, within MPMX20_00057at 57.207 kb on - strand, within MPMX20_00057at 57.266 kb on + strand, within MPMX20_00057at 57.274 kb on - strand, within MPMX20_00057at 57.276 kb on + strand, within MPMX20_00057

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Per-strain Table

Position Strand Gene LocusTag Fraction 0.1X LB plate, Mixed culture; Chryseobacterium geocarphospharae CO6 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
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53,930 - MPMX20_00054 0.44 -1.5
53,930 - MPMX20_00054 0.44 -1.8
53,933 - MPMX20_00054 0.44 -1.6
54,002 + MPMX20_00054 0.52 -0.7
54,023 + MPMX20_00054 0.54 -0.5
54,023 + MPMX20_00054 0.54 +0.5
54,023 + MPMX20_00054 0.54 +0.3
54,023 + MPMX20_00054 0.54 -2.0
54,023 + MPMX20_00054 0.54 +0.7
54,023 + MPMX20_00054 0.54 -0.7
54,026 - MPMX20_00054 0.54 -1.9
54,031 - MPMX20_00054 0.55 -0.7
54,073 - MPMX20_00054 0.59 -0.0
54,139 + MPMX20_00054 0.66 -0.3
54,155 + MPMX20_00054 0.68 -0.3
54,174 - MPMX20_00054 0.70 -0.3
54,233 + MPMX20_00054 0.76 -0.0
54,276 + MPMX20_00054 0.81 -2.4
54,284 - MPMX20_00054 0.81 -2.5
54,285 - MPMX20_00054 0.81 -0.0
54,292 - MPMX20_00054 0.82 -1.2
54,403 + -0.2
54,409 + -1.6
54,411 + -1.0
54,411 + +1.0
54,419 - +0.5
54,419 - -0.7
54,419 - -0.4
54,428 + -1.6
54,479 + -0.1
54,551 + MPMX20_00055 0.21 +0.5
54,559 - MPMX20_00055 0.24 -0.5
54,656 - MPMX20_00055 0.57 +1.2
54,656 - MPMX20_00055 0.57 +1.2
54,656 - MPMX20_00055 0.57 +0.1
54,656 - MPMX20_00055 0.57 +0.1
54,659 + MPMX20_00055 0.58 -0.4
54,727 + MPMX20_00055 0.80 +1.3
54,755 - -2.4
54,760 + +2.3
54,768 - -2.1
54,769 + +0.7
54,772 - +2.3
54,801 + -0.5
54,801 + -0.9
54,801 + -0.6
54,846 - -1.2
54,925 - +0.5
54,926 + +0.4
54,937 - -1.4
54,948 + -0.9
54,983 - -0.7
54,983 - +2.3
55,001 + +0.7
55,002 - +0.7
55,006 + -1.5
55,056 + MPMX20_00056 0.10 -1.6
55,056 + MPMX20_00056 0.10 +2.3
55,064 - MPMX20_00056 0.11 +0.1
55,064 - MPMX20_00056 0.11 -0.4
55,064 - MPMX20_00056 0.11 -0.3
55,227 + MPMX20_00056 0.23 +0.0
55,270 - MPMX20_00056 0.26 +0.2
55,270 - MPMX20_00056 0.26 +0.5
55,272 + MPMX20_00056 0.26 -0.6
55,279 + MPMX20_00056 0.27 +0.2
55,288 - MPMX20_00056 0.27 -0.4
55,290 - MPMX20_00056 0.27 +0.3
55,323 + MPMX20_00056 0.30 -0.0
55,400 + MPMX20_00056 0.35 +0.1
55,467 + MPMX20_00056 0.40 -0.7
55,530 - MPMX20_00056 0.45 -0.8
55,630 + MPMX20_00056 0.52 +3.0
55,701 + MPMX20_00056 0.58 -0.7
55,729 + MPMX20_00056 0.60 -0.0
55,739 + MPMX20_00056 0.60 -0.1
55,875 + MPMX20_00056 0.70 +0.7
55,886 + MPMX20_00056 0.71 +2.3
55,909 + MPMX20_00056 0.73 +0.7
55,909 + MPMX20_00056 0.73 -0.5
55,922 + MPMX20_00056 0.74 -0.3
55,967 - MPMX20_00056 0.77 -1.3
55,977 + MPMX20_00056 0.78 +1.3
55,978 + MPMX20_00056 0.78 -0.3
56,010 - MPMX20_00056 0.80 +0.7
56,029 - MPMX20_00056 0.82 -1.6
56,209 + -0.9
56,229 + +0.5
56,230 + +1.0
56,234 + -1.0
56,253 - -0.9
56,257 + +0.7
56,257 + -0.0
56,257 + -2.8
56,265 - +0.1
56,342 - +2.3
56,423 - -1.1
56,423 - +0.6
56,423 - +0.2
56,447 + -0.6
56,447 + -0.4
56,455 - +1.7
56,493 - -0.3
56,507 - -0.6
56,507 - +1.0
56,514 - +0.2
56,605 + MPMX20_00057 0.10 -2.1
56,671 + MPMX20_00057 0.13 +0.4
56,681 + MPMX20_00057 0.13 -1.6
56,714 + MPMX20_00057 0.14 -1.9
56,733 - MPMX20_00057 0.15 +1.7
56,761 + MPMX20_00057 0.15 -0.5
56,840 - MPMX20_00057 0.18 -0.5
56,882 - MPMX20_00057 0.19 -0.0
56,905 + MPMX20_00057 0.20 -2.8
56,970 - MPMX20_00057 0.22 -0.7
57,008 + MPMX20_00057 0.23 +1.0
57,016 - MPMX20_00057 0.24 -1.5
57,040 + MPMX20_00057 0.24 +1.3
57,150 - MPMX20_00057 0.28 -0.1
57,158 + MPMX20_00057 0.28 +0.6
57,179 + MPMX20_00057 0.29 -0.6
57,192 - MPMX20_00057 0.29 -0.3
57,207 - MPMX20_00057 0.30 +1.3
57,207 - MPMX20_00057 0.30 +0.3
57,266 + MPMX20_00057 0.32 -0.0
57,274 - MPMX20_00057 0.32 +1.3
57,276 + MPMX20_00057 0.32 -2.4

Or see this region's nucleotide sequence