Experiment: TSB plate, Mixed culture; Bacillus subtilis TBS_111 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03901 and MPMX20_03902 are separated by 9 nucleotides MPMX20_03902 and MPMX20_03903 are separated by 9 nucleotides MPMX20_03903 and MPMX20_03904 overlap by 1 nucleotides MPMX20_03904 and MPMX20_03905 are separated by 9 nucleotides
MPMX20_03901: MPMX20_03901 - Urease subunit alpha, at 4,110,602 to 4,112,305
_03901
MPMX20_03902: MPMX20_03902 - Urease accessory protein UreE, at 4,112,315 to 4,112,779
_03902
MPMX20_03903: MPMX20_03903 - hypothetical protein, at 4,112,789 to 4,113,328
_03903
MPMX20_03904: MPMX20_03904 - Urease accessory protein UreF, at 4,113,328 to 4,114,002
_03904
MPMX20_03905: MPMX20_03905 - Urease accessory protein UreG, at 4,114,012 to 4,114,629
_03905
Position (kb)
4112
4113
4114 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 4111.835 kb on + strand, within MPMX20_03901 at 4111.835 kb on + strand, within MPMX20_03901 at 4111.835 kb on + strand, within MPMX20_03901 at 4111.843 kb on - strand, within MPMX20_03901 at 4111.843 kb on - strand, within MPMX20_03901 at 4111.909 kb on - strand, within MPMX20_03901 at 4112.112 kb on + strand, within MPMX20_03901 at 4112.146 kb on + strand at 4112.177 kb on + strand at 4112.189 kb on + strand at 4112.189 kb on - strand at 4112.228 kb on - strand at 4112.307 kb on - strand at 4112.322 kb on + strand at 4112.334 kb on + strand at 4112.342 kb on - strand at 4112.356 kb on - strand at 4112.637 kb on + strand, within MPMX20_03902 at 4112.702 kb on - strand, within MPMX20_03902 at 4112.734 kb on - strand at 4112.748 kb on + strand at 4112.766 kb on - strand at 4112.855 kb on + strand, within MPMX20_03903 at 4112.947 kb on + strand, within MPMX20_03903 at 4112.993 kb on - strand, within MPMX20_03903 at 4113.106 kb on + strand, within MPMX20_03903 at 4113.153 kb on + strand, within MPMX20_03903 at 4113.153 kb on + strand, within MPMX20_03903 at 4113.153 kb on + strand, within MPMX20_03903 at 4113.153 kb on + strand, within MPMX20_03903 at 4113.153 kb on + strand, within MPMX20_03903 at 4113.153 kb on + strand, within MPMX20_03903 at 4113.153 kb on + strand, within MPMX20_03903 at 4113.153 kb on + strand, within MPMX20_03903 at 4113.153 kb on + strand, within MPMX20_03903 at 4113.153 kb on + strand, within MPMX20_03903 at 4113.155 kb on + strand, within MPMX20_03903 at 4113.161 kb on - strand, within MPMX20_03903 at 4113.161 kb on - strand, within MPMX20_03903 at 4113.161 kb on - strand, within MPMX20_03903 at 4113.161 kb on - strand, within MPMX20_03903 at 4113.161 kb on - strand, within MPMX20_03903 at 4113.175 kb on - strand, within MPMX20_03903 at 4113.213 kb on + strand, within MPMX20_03903 at 4113.221 kb on - strand, within MPMX20_03903 at 4113.221 kb on - strand, within MPMX20_03903 at 4113.288 kb on - strand at 4113.366 kb on + strand at 4113.409 kb on + strand, within MPMX20_03904 at 4113.417 kb on - strand, within MPMX20_03904 at 4113.446 kb on + strand, within MPMX20_03904 at 4113.446 kb on + strand, within MPMX20_03904 at 4113.484 kb on + strand, within MPMX20_03904 at 4113.490 kb on + strand, within MPMX20_03904 at 4113.490 kb on + strand, within MPMX20_03904 at 4113.570 kb on + strand, within MPMX20_03904 at 4113.583 kb on + strand, within MPMX20_03904 at 4113.583 kb on + strand, within MPMX20_03904 at 4113.593 kb on + strand, within MPMX20_03904 at 4113.614 kb on + strand, within MPMX20_03904 at 4113.648 kb on - strand, within MPMX20_03904 at 4113.654 kb on + strand, within MPMX20_03904 at 4113.675 kb on + strand, within MPMX20_03904 at 4113.685 kb on - strand, within MPMX20_03904 at 4113.722 kb on - strand, within MPMX20_03904 at 4113.726 kb on + strand, within MPMX20_03904 at 4113.732 kb on + strand, within MPMX20_03904 at 4113.764 kb on + strand, within MPMX20_03904 at 4113.769 kb on + strand, within MPMX20_03904 at 4113.776 kb on + strand, within MPMX20_03904 at 4113.850 kb on - strand, within MPMX20_03904 at 4113.890 kb on + strand, within MPMX20_03904 at 4113.927 kb on + strand, within MPMX20_03904 at 4113.935 kb on - strand at 4113.957 kb on - strand at 4113.957 kb on - strand at 4113.957 kb on - strand at 4113.962 kb on - strand at 4114.006 kb on - strand at 4114.042 kb on + strand at 4114.092 kb on + strand, within MPMX20_03905 at 4114.092 kb on + strand, within MPMX20_03905 at 4114.092 kb on + strand, within MPMX20_03905 at 4114.100 kb on - strand, within MPMX20_03905 at 4114.100 kb on - strand, within MPMX20_03905 at 4114.107 kb on - strand, within MPMX20_03905 at 4114.112 kb on + strand, within MPMX20_03905 at 4114.141 kb on + strand, within MPMX20_03905 at 4114.159 kb on - strand, within MPMX20_03905
Per-strain Table
Position Strand Gene LocusTag Fraction TSB plate, Mixed culture; Bacillus subtilis TBS_111 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct remove 4,111,835 + MPMX20_03901 0.72 -0.2 4,111,835 + MPMX20_03901 0.72 +0.3 4,111,835 + MPMX20_03901 0.72 -2.6 4,111,843 - MPMX20_03901 0.73 +1.8 4,111,843 - MPMX20_03901 0.73 -0.4 4,111,909 - MPMX20_03901 0.77 -2.1 4,112,112 + MPMX20_03901 0.89 -0.8 4,112,146 + +0.2 4,112,177 + +0.8 4,112,189 + +0.2 4,112,189 - +0.3 4,112,228 - -0.9 4,112,307 - -0.9 4,112,322 + +2.8 4,112,334 + -1.3 4,112,342 - -1.3 4,112,356 - -0.9 4,112,637 + MPMX20_03902 0.69 -0.2 4,112,702 - MPMX20_03902 0.83 -1.4 4,112,734 - +3.8 4,112,748 + +0.8 4,112,766 - +0.3 4,112,855 + MPMX20_03903 0.12 -1.9 4,112,947 + MPMX20_03903 0.29 +0.1 4,112,993 - MPMX20_03903 0.38 +1.5 4,113,106 + MPMX20_03903 0.59 -0.9 4,113,153 + MPMX20_03903 0.67 +0.8 4,113,153 + MPMX20_03903 0.67 -0.4 4,113,153 + MPMX20_03903 0.67 -1.7 4,113,153 + MPMX20_03903 0.67 +0.0 4,113,153 + MPMX20_03903 0.67 -1.8 4,113,153 + MPMX20_03903 0.67 -1.3 4,113,153 + MPMX20_03903 0.67 +0.4 4,113,153 + MPMX20_03903 0.67 +1.2 4,113,153 + MPMX20_03903 0.67 -0.3 4,113,153 + MPMX20_03903 0.67 +1.8 4,113,155 + MPMX20_03903 0.68 +1.8 4,113,161 - MPMX20_03903 0.69 -0.5 4,113,161 - MPMX20_03903 0.69 +1.8 4,113,161 - MPMX20_03903 0.69 -2.3 4,113,161 - MPMX20_03903 0.69 -0.6 4,113,161 - MPMX20_03903 0.69 +1.8 4,113,175 - MPMX20_03903 0.71 -0.4 4,113,213 + MPMX20_03903 0.79 +0.3 4,113,221 - MPMX20_03903 0.80 -0.6 4,113,221 - MPMX20_03903 0.80 -1.9 4,113,288 - +1.8 4,113,366 + -0.6 4,113,409 + MPMX20_03904 0.12 -2.1 4,113,417 - MPMX20_03904 0.13 +0.1 4,113,446 + MPMX20_03904 0.17 +1.2 4,113,446 + MPMX20_03904 0.17 -1.8 4,113,484 + MPMX20_03904 0.23 +3.2 4,113,490 + MPMX20_03904 0.24 -1.8 4,113,490 + MPMX20_03904 0.24 -1.9 4,113,570 + MPMX20_03904 0.36 -0.3 4,113,583 + MPMX20_03904 0.38 +0.4 4,113,583 + MPMX20_03904 0.38 +1.8 4,113,593 + MPMX20_03904 0.39 -1.1 4,113,614 + MPMX20_03904 0.42 +0.7 4,113,648 - MPMX20_03904 0.47 -0.7 4,113,654 + MPMX20_03904 0.48 +1.2 4,113,675 + MPMX20_03904 0.51 -0.4 4,113,685 - MPMX20_03904 0.53 +1.2 4,113,722 - MPMX20_03904 0.58 +0.3 4,113,726 + MPMX20_03904 0.59 +0.0 4,113,732 + MPMX20_03904 0.60 +0.5 4,113,764 + MPMX20_03904 0.65 +0.2 4,113,769 + MPMX20_03904 0.65 -0.2 4,113,776 + MPMX20_03904 0.66 -1.8 4,113,850 - MPMX20_03904 0.77 -0.4 4,113,890 + MPMX20_03904 0.83 +1.8 4,113,927 + MPMX20_03904 0.89 +0.4 4,113,935 - +0.1 4,113,957 - -1.3 4,113,957 - +0.2 4,113,957 - -0.7 4,113,962 - -1.2 4,114,006 - +0.8 4,114,042 + +0.1 4,114,092 + MPMX20_03905 0.13 +0.2 4,114,092 + MPMX20_03905 0.13 +1.2 4,114,092 + MPMX20_03905 0.13 +0.8 4,114,100 - MPMX20_03905 0.14 +0.2 4,114,100 - MPMX20_03905 0.14 -1.0 4,114,107 - MPMX20_03905 0.15 -1.4 4,114,112 + MPMX20_03905 0.16 -1.0 4,114,141 + MPMX20_03905 0.21 -1.4 4,114,159 - MPMX20_03905 0.24 -1.0
Or see this region's nucleotide sequence