Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03903

Experiment: TSB plate, Mixed culture; Bacillus subtilis TBS_111 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03901 and MPMX20_03902 are separated by 9 nucleotidesMPMX20_03902 and MPMX20_03903 are separated by 9 nucleotidesMPMX20_03903 and MPMX20_03904 overlap by 1 nucleotidesMPMX20_03904 and MPMX20_03905 are separated by 9 nucleotides MPMX20_03901: MPMX20_03901 - Urease subunit alpha, at 4,110,602 to 4,112,305 _03901 MPMX20_03902: MPMX20_03902 - Urease accessory protein UreE, at 4,112,315 to 4,112,779 _03902 MPMX20_03903: MPMX20_03903 - hypothetical protein, at 4,112,789 to 4,113,328 _03903 MPMX20_03904: MPMX20_03904 - Urease accessory protein UreF, at 4,113,328 to 4,114,002 _03904 MPMX20_03905: MPMX20_03905 - Urease accessory protein UreG, at 4,114,012 to 4,114,629 _03905 Position (kb) 4112 4113 4114Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 4111.835 kb on + strand, within MPMX20_03901at 4111.835 kb on + strand, within MPMX20_03901at 4111.835 kb on + strand, within MPMX20_03901at 4111.843 kb on - strand, within MPMX20_03901at 4111.843 kb on - strand, within MPMX20_03901at 4111.909 kb on - strand, within MPMX20_03901at 4112.112 kb on + strand, within MPMX20_03901at 4112.146 kb on + strandat 4112.177 kb on + strandat 4112.189 kb on + strandat 4112.189 kb on - strandat 4112.228 kb on - strandat 4112.307 kb on - strandat 4112.322 kb on + strandat 4112.334 kb on + strandat 4112.342 kb on - strandat 4112.356 kb on - strandat 4112.637 kb on + strand, within MPMX20_03902at 4112.702 kb on - strand, within MPMX20_03902at 4112.734 kb on - strandat 4112.748 kb on + strandat 4112.766 kb on - strandat 4112.855 kb on + strand, within MPMX20_03903at 4112.947 kb on + strand, within MPMX20_03903at 4112.993 kb on - strand, within MPMX20_03903at 4113.106 kb on + strand, within MPMX20_03903at 4113.153 kb on + strand, within MPMX20_03903at 4113.153 kb on + strand, within MPMX20_03903at 4113.153 kb on + strand, within MPMX20_03903at 4113.153 kb on + strand, within MPMX20_03903at 4113.153 kb on + strand, within MPMX20_03903at 4113.153 kb on + strand, within MPMX20_03903at 4113.153 kb on + strand, within MPMX20_03903at 4113.153 kb on + strand, within MPMX20_03903at 4113.153 kb on + strand, within MPMX20_03903at 4113.153 kb on + strand, within MPMX20_03903at 4113.155 kb on + strand, within MPMX20_03903at 4113.161 kb on - strand, within MPMX20_03903at 4113.161 kb on - strand, within MPMX20_03903at 4113.161 kb on - strand, within MPMX20_03903at 4113.161 kb on - strand, within MPMX20_03903at 4113.161 kb on - strand, within MPMX20_03903at 4113.175 kb on - strand, within MPMX20_03903at 4113.213 kb on + strand, within MPMX20_03903at 4113.221 kb on - strand, within MPMX20_03903at 4113.221 kb on - strand, within MPMX20_03903at 4113.288 kb on - strandat 4113.366 kb on + strandat 4113.409 kb on + strand, within MPMX20_03904at 4113.417 kb on - strand, within MPMX20_03904at 4113.446 kb on + strand, within MPMX20_03904at 4113.446 kb on + strand, within MPMX20_03904at 4113.484 kb on + strand, within MPMX20_03904at 4113.490 kb on + strand, within MPMX20_03904at 4113.490 kb on + strand, within MPMX20_03904at 4113.570 kb on + strand, within MPMX20_03904at 4113.583 kb on + strand, within MPMX20_03904at 4113.583 kb on + strand, within MPMX20_03904at 4113.593 kb on + strand, within MPMX20_03904at 4113.614 kb on + strand, within MPMX20_03904at 4113.648 kb on - strand, within MPMX20_03904at 4113.654 kb on + strand, within MPMX20_03904at 4113.675 kb on + strand, within MPMX20_03904at 4113.685 kb on - strand, within MPMX20_03904at 4113.722 kb on - strand, within MPMX20_03904at 4113.726 kb on + strand, within MPMX20_03904at 4113.732 kb on + strand, within MPMX20_03904at 4113.764 kb on + strand, within MPMX20_03904at 4113.769 kb on + strand, within MPMX20_03904at 4113.776 kb on + strand, within MPMX20_03904at 4113.850 kb on - strand, within MPMX20_03904at 4113.890 kb on + strand, within MPMX20_03904at 4113.927 kb on + strand, within MPMX20_03904at 4113.935 kb on - strandat 4113.957 kb on - strandat 4113.957 kb on - strandat 4113.957 kb on - strandat 4113.962 kb on - strandat 4114.006 kb on - strandat 4114.042 kb on + strandat 4114.092 kb on + strand, within MPMX20_03905at 4114.092 kb on + strand, within MPMX20_03905at 4114.092 kb on + strand, within MPMX20_03905at 4114.100 kb on - strand, within MPMX20_03905at 4114.100 kb on - strand, within MPMX20_03905at 4114.107 kb on - strand, within MPMX20_03905at 4114.112 kb on + strand, within MPMX20_03905at 4114.141 kb on + strand, within MPMX20_03905at 4114.159 kb on - strand, within MPMX20_03905

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB plate, Mixed culture; Bacillus subtilis TBS_111 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
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4,111,835 + MPMX20_03901 0.72 -0.2
4,111,835 + MPMX20_03901 0.72 +0.3
4,111,835 + MPMX20_03901 0.72 -2.6
4,111,843 - MPMX20_03901 0.73 +1.8
4,111,843 - MPMX20_03901 0.73 -0.4
4,111,909 - MPMX20_03901 0.77 -2.1
4,112,112 + MPMX20_03901 0.89 -0.8
4,112,146 + +0.2
4,112,177 + +0.8
4,112,189 + +0.2
4,112,189 - +0.3
4,112,228 - -0.9
4,112,307 - -0.9
4,112,322 + +2.8
4,112,334 + -1.3
4,112,342 - -1.3
4,112,356 - -0.9
4,112,637 + MPMX20_03902 0.69 -0.2
4,112,702 - MPMX20_03902 0.83 -1.4
4,112,734 - +3.8
4,112,748 + +0.8
4,112,766 - +0.3
4,112,855 + MPMX20_03903 0.12 -1.9
4,112,947 + MPMX20_03903 0.29 +0.1
4,112,993 - MPMX20_03903 0.38 +1.5
4,113,106 + MPMX20_03903 0.59 -0.9
4,113,153 + MPMX20_03903 0.67 +0.8
4,113,153 + MPMX20_03903 0.67 -0.4
4,113,153 + MPMX20_03903 0.67 -1.7
4,113,153 + MPMX20_03903 0.67 +0.0
4,113,153 + MPMX20_03903 0.67 -1.8
4,113,153 + MPMX20_03903 0.67 -1.3
4,113,153 + MPMX20_03903 0.67 +0.4
4,113,153 + MPMX20_03903 0.67 +1.2
4,113,153 + MPMX20_03903 0.67 -0.3
4,113,153 + MPMX20_03903 0.67 +1.8
4,113,155 + MPMX20_03903 0.68 +1.8
4,113,161 - MPMX20_03903 0.69 -0.5
4,113,161 - MPMX20_03903 0.69 +1.8
4,113,161 - MPMX20_03903 0.69 -2.3
4,113,161 - MPMX20_03903 0.69 -0.6
4,113,161 - MPMX20_03903 0.69 +1.8
4,113,175 - MPMX20_03903 0.71 -0.4
4,113,213 + MPMX20_03903 0.79 +0.3
4,113,221 - MPMX20_03903 0.80 -0.6
4,113,221 - MPMX20_03903 0.80 -1.9
4,113,288 - +1.8
4,113,366 + -0.6
4,113,409 + MPMX20_03904 0.12 -2.1
4,113,417 - MPMX20_03904 0.13 +0.1
4,113,446 + MPMX20_03904 0.17 +1.2
4,113,446 + MPMX20_03904 0.17 -1.8
4,113,484 + MPMX20_03904 0.23 +3.2
4,113,490 + MPMX20_03904 0.24 -1.8
4,113,490 + MPMX20_03904 0.24 -1.9
4,113,570 + MPMX20_03904 0.36 -0.3
4,113,583 + MPMX20_03904 0.38 +0.4
4,113,583 + MPMX20_03904 0.38 +1.8
4,113,593 + MPMX20_03904 0.39 -1.1
4,113,614 + MPMX20_03904 0.42 +0.7
4,113,648 - MPMX20_03904 0.47 -0.7
4,113,654 + MPMX20_03904 0.48 +1.2
4,113,675 + MPMX20_03904 0.51 -0.4
4,113,685 - MPMX20_03904 0.53 +1.2
4,113,722 - MPMX20_03904 0.58 +0.3
4,113,726 + MPMX20_03904 0.59 +0.0
4,113,732 + MPMX20_03904 0.60 +0.5
4,113,764 + MPMX20_03904 0.65 +0.2
4,113,769 + MPMX20_03904 0.65 -0.2
4,113,776 + MPMX20_03904 0.66 -1.8
4,113,850 - MPMX20_03904 0.77 -0.4
4,113,890 + MPMX20_03904 0.83 +1.8
4,113,927 + MPMX20_03904 0.89 +0.4
4,113,935 - +0.1
4,113,957 - -1.3
4,113,957 - +0.2
4,113,957 - -0.7
4,113,962 - -1.2
4,114,006 - +0.8
4,114,042 + +0.1
4,114,092 + MPMX20_03905 0.13 +0.2
4,114,092 + MPMX20_03905 0.13 +1.2
4,114,092 + MPMX20_03905 0.13 +0.8
4,114,100 - MPMX20_03905 0.14 +0.2
4,114,100 - MPMX20_03905 0.14 -1.0
4,114,107 - MPMX20_03905 0.15 -1.4
4,114,112 + MPMX20_03905 0.16 -1.0
4,114,141 + MPMX20_03905 0.21 -1.4
4,114,159 - MPMX20_03905 0.24 -1.0

Or see this region's nucleotide sequence