Experiment: TSB plate, Mixed culture; Bacillus subtilis TBS_111 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_00751 and MPMX20_00752 are separated by 29 nucleotides MPMX20_00752 and MPMX20_00753 are separated by 12 nucleotides
MPMX20_00751: MPMX20_00751 - Co-chaperone protein DjlA, at 778,005 to 778,820
_00751
MPMX20_00752: MPMX20_00752 - Dual-specificity RNA pseudouridine synthase RluA, at 778,850 to 779,509
_00752
MPMX20_00753: MPMX20_00753 - RNA polymerase-associated protein RapA, at 779,522 to 782,428
_00753
Position (kb) 778
779
780 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 777.869 kb on + strand at 777.876 kb on + strand at 777.883 kb on - strand at 777.884 kb on - strand at 777.884 kb on - strand at 777.910 kb on + strand at 777.945 kb on + strand at 777.945 kb on + strand at 777.945 kb on + strand at 777.953 kb on - strand at 777.953 kb on - strand at 777.953 kb on - strand at 778.002 kb on - strand at 778.002 kb on - strand at 778.002 kb on - strand at 778.054 kb on + strand at 778.127 kb on + strand, within MPMX20_00751 at 778.177 kb on + strand, within MPMX20_00751 at 778.185 kb on - strand, within MPMX20_00751 at 778.251 kb on + strand, within MPMX20_00751 at 778.355 kb on + strand, within MPMX20_00751 at 778.355 kb on + strand, within MPMX20_00751 at 778.355 kb on + strand, within MPMX20_00751 at 778.372 kb on - strand, within MPMX20_00751 at 778.495 kb on + strand, within MPMX20_00751 at 778.568 kb on - strand, within MPMX20_00751 at 778.624 kb on + strand, within MPMX20_00751 at 778.629 kb on - strand, within MPMX20_00751 at 778.669 kb on + strand, within MPMX20_00751 at 778.672 kb on - strand, within MPMX20_00751 at 778.686 kb on - strand, within MPMX20_00751 at 778.688 kb on + strand, within MPMX20_00751 at 778.693 kb on - strand, within MPMX20_00751 at 778.757 kb on + strand at 778.790 kb on - strand at 778.900 kb on + strand at 778.908 kb on - strand at 779.064 kb on + strand, within MPMX20_00752 at 779.064 kb on + strand, within MPMX20_00752 at 779.064 kb on + strand, within MPMX20_00752 at 779.064 kb on + strand, within MPMX20_00752 at 779.072 kb on - strand, within MPMX20_00752 at 779.072 kb on - strand, within MPMX20_00752 at 779.081 kb on + strand, within MPMX20_00752 at 779.081 kb on + strand, within MPMX20_00752 at 779.089 kb on - strand, within MPMX20_00752 at 779.124 kb on + strand, within MPMX20_00752 at 779.285 kb on - strand, within MPMX20_00752 at 779.314 kb on - strand, within MPMX20_00752 at 779.334 kb on + strand, within MPMX20_00752 at 779.367 kb on - strand, within MPMX20_00752 at 779.386 kb on - strand, within MPMX20_00752 at 779.436 kb on + strand, within MPMX20_00752 at 779.444 kb on - strand at 779.504 kb on - strand at 779.526 kb on - strand at 779.575 kb on + strand at 779.575 kb on + strand at 779.575 kb on + strand at 779.583 kb on - strand at 779.672 kb on + strand at 779.715 kb on + strand at 779.783 kb on + strand at 779.798 kb on + strand at 779.952 kb on - strand, within MPMX20_00753 at 779.999 kb on - strand, within MPMX20_00753 at 780.088 kb on + strand, within MPMX20_00753 at 780.096 kb on + strand, within MPMX20_00753 at 780.104 kb on - strand, within MPMX20_00753 at 780.106 kb on + strand, within MPMX20_00753 at 780.204 kb on - strand, within MPMX20_00753 at 780.206 kb on + strand, within MPMX20_00753 at 780.214 kb on - strand, within MPMX20_00753 at 780.263 kb on - strand, within MPMX20_00753 at 780.273 kb on - strand, within MPMX20_00753 at 780.290 kb on + strand, within MPMX20_00753 at 780.298 kb on - strand, within MPMX20_00753 at 780.326 kb on + strand, within MPMX20_00753 at 780.334 kb on - strand, within MPMX20_00753 at 780.353 kb on - strand, within MPMX20_00753 at 780.423 kb on + strand, within MPMX20_00753 at 780.423 kb on + strand, within MPMX20_00753 at 780.431 kb on - strand, within MPMX20_00753 at 780.459 kb on + strand, within MPMX20_00753 at 780.494 kb on - strand, within MPMX20_00753
Per-strain Table
Position Strand Gene LocusTag Fraction TSB plate, Mixed culture; Bacillus subtilis TBS_111 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct remove 777,869 + +0.3 777,876 + +0.1 777,883 - -0.8 777,884 - -2.4 777,884 - +0.6 777,910 + -0.3 777,945 + -2.2 777,945 + +0.6 777,945 + +0.1 777,953 - -2.3 777,953 - +0.2 777,953 - +0.9 778,002 - +1.3 778,002 - +2.9 778,002 - +0.8 778,054 + -0.1 778,127 + MPMX20_00751 0.15 -1.7 778,177 + MPMX20_00751 0.21 -0.7 778,185 - MPMX20_00751 0.22 -1.0 778,251 + MPMX20_00751 0.30 +1.0 778,355 + MPMX20_00751 0.43 -0.1 778,355 + MPMX20_00751 0.43 -1.3 778,355 + MPMX20_00751 0.43 +2.6 778,372 - MPMX20_00751 0.45 +0.4 778,495 + MPMX20_00751 0.60 +0.0 778,568 - MPMX20_00751 0.69 -1.9 778,624 + MPMX20_00751 0.76 -1.2 778,629 - MPMX20_00751 0.76 -0.6 778,669 + MPMX20_00751 0.81 +0.0 778,672 - MPMX20_00751 0.82 +1.3 778,686 - MPMX20_00751 0.83 -0.7 778,688 + MPMX20_00751 0.84 +0.4 778,693 - MPMX20_00751 0.84 -1.6 778,757 + +0.9 778,790 - -1.4 778,900 + -1.2 778,908 - +1.3 779,064 + MPMX20_00752 0.32 -1.5 779,064 + MPMX20_00752 0.32 -0.5 779,064 + MPMX20_00752 0.32 +1.0 779,064 + MPMX20_00752 0.32 -0.3 779,072 - MPMX20_00752 0.34 +1.3 779,072 - MPMX20_00752 0.34 +0.9 779,081 + MPMX20_00752 0.35 -0.8 779,081 + MPMX20_00752 0.35 -2.0 779,089 - MPMX20_00752 0.36 -0.6 779,124 + MPMX20_00752 0.42 -0.1 779,285 - MPMX20_00752 0.66 -0.7 779,314 - MPMX20_00752 0.70 -0.3 779,334 + MPMX20_00752 0.73 -2.4 779,367 - MPMX20_00752 0.78 -0.6 779,386 - MPMX20_00752 0.81 -1.6 779,436 + MPMX20_00752 0.89 -1.8 779,444 - +1.3 779,504 - -2.2 779,526 - -1.0 779,575 + +0.9 779,575 + +1.0 779,575 + +0.6 779,583 - +0.6 779,672 + +0.9 779,715 + +3.9 779,783 + +1.0 779,798 + +0.6 779,952 - MPMX20_00753 0.15 +0.3 779,999 - MPMX20_00753 0.16 -0.4 780,088 + MPMX20_00753 0.19 -0.1 780,096 + MPMX20_00753 0.20 +0.9 780,104 - MPMX20_00753 0.20 -1.4 780,106 + MPMX20_00753 0.20 -3.4 780,204 - MPMX20_00753 0.23 -1.6 780,206 + MPMX20_00753 0.24 -0.4 780,214 - MPMX20_00753 0.24 -1.4 780,263 - MPMX20_00753 0.25 -2.5 780,273 - MPMX20_00753 0.26 -0.9 780,290 + MPMX20_00753 0.26 -0.1 780,298 - MPMX20_00753 0.27 -0.1 780,326 + MPMX20_00753 0.28 -0.6 780,334 - MPMX20_00753 0.28 +0.6 780,353 - MPMX20_00753 0.29 +1.9 780,423 + MPMX20_00753 0.31 +0.6 780,423 + MPMX20_00753 0.31 +0.6 780,431 - MPMX20_00753 0.31 -1.4 780,459 + MPMX20_00753 0.32 +0.6 780,494 - MPMX20_00753 0.33 -1.1
Or see this region's nucleotide sequence