Experiment: 0.1X LB plate, Mixed culture; Bacillus pumilus TBS_104 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04351 and MPMX20_04352 are separated by 72 nucleotides MPMX20_04352 and MPMX20_04353 are separated by 4 nucleotides MPMX20_04353 and MPMX20_04354 are separated by 144 nucleotides
MPMX20_04351: MPMX20_04351 - Queuosine precursor transporter, at 4,545,271 to 4,545,936
_04351
MPMX20_04352: MPMX20_04352 - hypothetical protein, at 4,546,009 to 4,546,566
_04352
MPMX20_04353: MPMX20_04353 - putative MFS-type transporter YhhS, at 4,546,571 to 4,547,788
_04353
MPMX20_04354: MPMX20_04354 - Putative transport protein YhhT, at 4,547,933 to 4,548,982
_04354
Position (kb)
4546
4547
4548 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 4545.586 kb on - strand, within MPMX20_04351 at 4545.586 kb on - strand, within MPMX20_04351 at 4545.614 kb on + strand, within MPMX20_04351 at 4545.622 kb on - strand, within MPMX20_04351 at 4545.784 kb on + strand, within MPMX20_04351 at 4545.821 kb on + strand, within MPMX20_04351 at 4545.821 kb on + strand, within MPMX20_04351 at 4545.821 kb on + strand, within MPMX20_04351 at 4545.821 kb on + strand, within MPMX20_04351 at 4545.829 kb on - strand, within MPMX20_04351 at 4545.829 kb on - strand, within MPMX20_04351 at 4545.829 kb on - strand, within MPMX20_04351 at 4545.829 kb on - strand, within MPMX20_04351 at 4545.837 kb on - strand, within MPMX20_04351 at 4545.844 kb on + strand, within MPMX20_04351 at 4545.893 kb on - strand at 4545.931 kb on + strand at 4545.931 kb on + strand at 4545.931 kb on + strand at 4545.931 kb on + strand at 4545.931 kb on + strand at 4545.931 kb on + strand at 4545.931 kb on + strand at 4545.931 kb on + strand at 4545.931 kb on + strand at 4545.931 kb on + strand at 4545.931 kb on + strand at 4545.939 kb on - strand at 4545.939 kb on - strand at 4545.939 kb on - strand at 4545.939 kb on - strand at 4545.939 kb on - strand at 4545.939 kb on - strand at 4545.939 kb on - strand at 4545.939 kb on - strand at 4545.939 kb on - strand at 4545.939 kb on - strand at 4545.939 kb on - strand at 4545.939 kb on - strand at 4545.939 kb on - strand at 4545.939 kb on - strand at 4545.963 kb on - strand at 4546.034 kb on + strand at 4546.056 kb on - strand at 4546.056 kb on - strand at 4546.096 kb on - strand, within MPMX20_04352 at 4546.108 kb on + strand, within MPMX20_04352 at 4546.111 kb on - strand, within MPMX20_04352 at 4546.111 kb on - strand, within MPMX20_04352 at 4546.113 kb on + strand, within MPMX20_04352 at 4546.164 kb on - strand, within MPMX20_04352 at 4546.177 kb on + strand, within MPMX20_04352 at 4546.218 kb on + strand, within MPMX20_04352 at 4546.227 kb on + strand, within MPMX20_04352 at 4546.227 kb on + strand, within MPMX20_04352 at 4546.227 kb on + strand, within MPMX20_04352 at 4546.235 kb on - strand, within MPMX20_04352 at 4546.256 kb on - strand, within MPMX20_04352 at 4546.299 kb on - strand, within MPMX20_04352 at 4546.324 kb on + strand, within MPMX20_04352 at 4546.329 kb on + strand, within MPMX20_04352 at 4546.334 kb on + strand, within MPMX20_04352 at 4546.337 kb on - strand, within MPMX20_04352 at 4546.462 kb on + strand, within MPMX20_04352 at 4546.576 kb on + strand at 4546.584 kb on - strand at 4546.681 kb on - strand at 4546.722 kb on + strand, within MPMX20_04353 at 4546.725 kb on - strand, within MPMX20_04353 at 4546.750 kb on + strand, within MPMX20_04353 at 4546.904 kb on - strand, within MPMX20_04353 at 4546.904 kb on - strand, within MPMX20_04353 at 4546.908 kb on - strand, within MPMX20_04353 at 4546.987 kb on - strand, within MPMX20_04353 at 4547.012 kb on - strand, within MPMX20_04353 at 4547.029 kb on - strand, within MPMX20_04353 at 4547.029 kb on - strand, within MPMX20_04353 at 4547.036 kb on + strand, within MPMX20_04353 at 4547.044 kb on - strand, within MPMX20_04353 at 4547.050 kb on - strand, within MPMX20_04353 at 4547.124 kb on + strand, within MPMX20_04353 at 4547.124 kb on + strand, within MPMX20_04353 at 4547.124 kb on + strand, within MPMX20_04353 at 4547.132 kb on - strand, within MPMX20_04353 at 4547.132 kb on - strand, within MPMX20_04353 at 4547.135 kb on + strand, within MPMX20_04353 at 4547.143 kb on - strand, within MPMX20_04353 at 4547.143 kb on - strand, within MPMX20_04353 at 4547.175 kb on + strand, within MPMX20_04353 at 4547.175 kb on + strand, within MPMX20_04353 at 4547.234 kb on + strand, within MPMX20_04353 at 4547.235 kb on - strand, within MPMX20_04353 at 4547.235 kb on - strand, within MPMX20_04353 at 4547.263 kb on + strand, within MPMX20_04353 at 4547.277 kb on + strand, within MPMX20_04353 at 4547.428 kb on + strand, within MPMX20_04353 at 4547.433 kb on + strand, within MPMX20_04353 at 4547.441 kb on - strand, within MPMX20_04353 at 4547.441 kb on - strand, within MPMX20_04353 at 4547.441 kb on - strand, within MPMX20_04353 at 4547.451 kb on - strand, within MPMX20_04353 at 4547.500 kb on - strand, within MPMX20_04353 at 4547.500 kb on - strand, within MPMX20_04353 at 4547.539 kb on + strand, within MPMX20_04353 at 4547.547 kb on - strand, within MPMX20_04353 at 4547.552 kb on - strand, within MPMX20_04353 at 4547.575 kb on - strand, within MPMX20_04353 at 4547.580 kb on + strand, within MPMX20_04353 at 4547.582 kb on + strand, within MPMX20_04353 at 4547.582 kb on + strand, within MPMX20_04353 at 4547.590 kb on - strand, within MPMX20_04353 at 4547.590 kb on - strand, within MPMX20_04353 at 4547.595 kb on + strand, within MPMX20_04353 at 4547.598 kb on + strand, within MPMX20_04353 at 4547.764 kb on - strand at 4547.787 kb on - strand at 4547.799 kb on - strand at 4547.872 kb on + strand at 4547.895 kb on + strand at 4547.895 kb on + strand at 4547.903 kb on - strand at 4547.903 kb on - strand at 4547.903 kb on - strand at 4547.903 kb on - strand at 4547.910 kb on + strand at 4547.917 kb on + strand at 4547.929 kb on + strand at 4547.944 kb on - strand at 4547.955 kb on + strand at 4547.955 kb on - strand at 4547.963 kb on + strand at 4547.968 kb on - strand at 4547.971 kb on - strand at 4547.988 kb on + strand at 4547.988 kb on + strand at 4547.996 kb on - strand at 4547.996 kb on - strand at 4548.008 kb on + strand at 4548.018 kb on - strand at 4548.018 kb on - strand at 4548.043 kb on + strand, within MPMX20_04354 at 4548.111 kb on + strand, within MPMX20_04354 at 4548.199 kb on + strand, within MPMX20_04354 at 4548.207 kb on - strand, within MPMX20_04354 at 4548.215 kb on + strand, within MPMX20_04354 at 4548.220 kb on + strand, within MPMX20_04354 at 4548.228 kb on - strand, within MPMX20_04354 at 4548.228 kb on - strand, within MPMX20_04354 at 4548.228 kb on - strand, within MPMX20_04354 at 4548.228 kb on - strand, within MPMX20_04354 at 4548.310 kb on - strand, within MPMX20_04354 at 4548.328 kb on + strand, within MPMX20_04354 at 4548.329 kb on + strand, within MPMX20_04354 at 4548.329 kb on + strand, within MPMX20_04354 at 4548.329 kb on + strand, within MPMX20_04354 at 4548.336 kb on - strand, within MPMX20_04354 at 4548.336 kb on - strand, within MPMX20_04354 at 4548.337 kb on - strand, within MPMX20_04354 at 4548.347 kb on + strand, within MPMX20_04354 at 4548.381 kb on + strand, within MPMX20_04354 at 4548.407 kb on + strand, within MPMX20_04354 at 4548.418 kb on + strand, within MPMX20_04354 at 4548.426 kb on - strand, within MPMX20_04354 at 4548.451 kb on - strand, within MPMX20_04354 at 4548.463 kb on - strand, within MPMX20_04354 at 4548.485 kb on + strand, within MPMX20_04354 at 4548.485 kb on + strand, within MPMX20_04354 at 4548.485 kb on + strand, within MPMX20_04354 at 4548.485 kb on + strand, within MPMX20_04354 at 4548.485 kb on + strand, within MPMX20_04354 at 4548.493 kb on - strand, within MPMX20_04354 at 4548.493 kb on - strand, within MPMX20_04354 at 4548.493 kb on - strand, within MPMX20_04354 at 4548.493 kb on - strand, within MPMX20_04354 at 4548.493 kb on - strand, within MPMX20_04354 at 4548.493 kb on - strand, within MPMX20_04354 at 4548.493 kb on - strand, within MPMX20_04354 at 4548.498 kb on + strand, within MPMX20_04354 at 4548.522 kb on - strand, within MPMX20_04354 at 4548.544 kb on + strand, within MPMX20_04354 at 4548.555 kb on + strand, within MPMX20_04354 at 4548.575 kb on - strand, within MPMX20_04354 at 4548.581 kb on - strand, within MPMX20_04354 at 4548.604 kb on + strand, within MPMX20_04354 at 4548.604 kb on + strand, within MPMX20_04354 at 4548.604 kb on + strand, within MPMX20_04354 at 4548.604 kb on + strand, within MPMX20_04354 at 4548.604 kb on + strand, within MPMX20_04354 at 4548.604 kb on + strand, within MPMX20_04354 at 4548.612 kb on - strand, within MPMX20_04354 at 4548.612 kb on - strand, within MPMX20_04354 at 4548.612 kb on - strand, within MPMX20_04354 at 4548.612 kb on - strand, within MPMX20_04354 at 4548.622 kb on - strand, within MPMX20_04354 at 4548.631 kb on + strand, within MPMX20_04354 at 4548.658 kb on + strand, within MPMX20_04354 at 4548.666 kb on - strand, within MPMX20_04354 at 4548.666 kb on - strand, within MPMX20_04354 at 4548.666 kb on - strand, within MPMX20_04354 at 4548.701 kb on + strand, within MPMX20_04354 at 4548.702 kb on + strand, within MPMX20_04354 at 4548.721 kb on + strand, within MPMX20_04354 at 4548.721 kb on + strand, within MPMX20_04354 at 4548.733 kb on + strand, within MPMX20_04354 at 4548.733 kb on + strand, within MPMX20_04354 at 4548.733 kb on + strand, within MPMX20_04354 at 4548.733 kb on + strand, within MPMX20_04354 at 4548.733 kb on + strand, within MPMX20_04354 at 4548.733 kb on + strand, within MPMX20_04354 at 4548.733 kb on + strand, within MPMX20_04354 at 4548.741 kb on - strand, within MPMX20_04354 at 4548.752 kb on + strand, within MPMX20_04354 at 4548.760 kb on - strand, within MPMX20_04354 at 4548.765 kb on + strand, within MPMX20_04354 at 4548.765 kb on + strand, within MPMX20_04354 at 4548.775 kb on + strand, within MPMX20_04354 at 4548.788 kb on - strand, within MPMX20_04354
Per-strain Table
Position Strand Gene LocusTag Fraction 0.1X LB plate, Mixed culture; Bacillus pumilus TBS_104 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct remove 4,545,586 - MPMX20_04351 0.47 +0.1 4,545,586 - MPMX20_04351 0.47 -0.6 4,545,614 + MPMX20_04351 0.52 +0.1 4,545,622 - MPMX20_04351 0.53 -0.9 4,545,784 + MPMX20_04351 0.77 +0.1 4,545,821 + MPMX20_04351 0.83 -0.4 4,545,821 + MPMX20_04351 0.83 -0.2 4,545,821 + MPMX20_04351 0.83 -0.2 4,545,821 + MPMX20_04351 0.83 +0.9 4,545,829 - MPMX20_04351 0.84 -0.3 4,545,829 - MPMX20_04351 0.84 -0.6 4,545,829 - MPMX20_04351 0.84 +0.4 4,545,829 - MPMX20_04351 0.84 -1.9 4,545,837 - MPMX20_04351 0.85 +0.1 4,545,844 + MPMX20_04351 0.86 +0.8 4,545,893 - +0.3 4,545,931 + -1.7 4,545,931 + -0.6 4,545,931 + -1.0 4,545,931 + -0.1 4,545,931 + -0.5 4,545,931 + +0.6 4,545,931 + -1.2 4,545,931 + +1.4 4,545,931 + -2.2 4,545,931 + +0.5 4,545,931 + -0.4 4,545,939 - -0.1 4,545,939 - -0.8 4,545,939 - +0.2 4,545,939 - -0.6 4,545,939 - -1.0 4,545,939 - +0.4 4,545,939 - -1.4 4,545,939 - +0.1 4,545,939 - -1.5 4,545,939 - -0.2 4,545,939 - +0.1 4,545,939 - +0.5 4,545,939 - +0.0 4,545,939 - +0.0 4,545,963 - +0.5 4,546,034 + -0.5 4,546,056 - -3.5 4,546,056 - -0.5 4,546,096 - MPMX20_04352 0.16 -2.1 4,546,108 + MPMX20_04352 0.18 -0.2 4,546,111 - MPMX20_04352 0.18 -1.9 4,546,111 - MPMX20_04352 0.18 -1.0 4,546,113 + MPMX20_04352 0.19 -1.8 4,546,164 - MPMX20_04352 0.28 -1.5 4,546,177 + MPMX20_04352 0.30 +2.0 4,546,218 + MPMX20_04352 0.37 -1.0 4,546,227 + MPMX20_04352 0.39 +1.4 4,546,227 + MPMX20_04352 0.39 -1.0 4,546,227 + MPMX20_04352 0.39 -1.6 4,546,235 - MPMX20_04352 0.41 -1.9 4,546,256 - MPMX20_04352 0.44 -0.8 4,546,299 - MPMX20_04352 0.52 -1.0 4,546,324 + MPMX20_04352 0.56 -0.4 4,546,329 + MPMX20_04352 0.57 -1.5 4,546,334 + MPMX20_04352 0.58 +0.4 4,546,337 - MPMX20_04352 0.59 -3.8 4,546,462 + MPMX20_04352 0.81 +0.1 4,546,576 + +0.1 4,546,584 - -1.1 4,546,681 - +0.9 4,546,722 + MPMX20_04353 0.12 +0.2 4,546,725 - MPMX20_04353 0.13 +0.8 4,546,750 + MPMX20_04353 0.15 +0.9 4,546,904 - MPMX20_04353 0.27 -2.2 4,546,904 - MPMX20_04353 0.27 -0.7 4,546,908 - MPMX20_04353 0.28 +0.4 4,546,987 - MPMX20_04353 0.34 +1.4 4,547,012 - MPMX20_04353 0.36 -0.9 4,547,029 - MPMX20_04353 0.38 -1.0 4,547,029 - MPMX20_04353 0.38 -0.6 4,547,036 + MPMX20_04353 0.38 -1.3 4,547,044 - MPMX20_04353 0.39 +0.0 4,547,050 - MPMX20_04353 0.39 +0.8 4,547,124 + MPMX20_04353 0.45 -0.0 4,547,124 + MPMX20_04353 0.45 +0.2 4,547,124 + MPMX20_04353 0.45 -1.2 4,547,132 - MPMX20_04353 0.46 -1.1 4,547,132 - MPMX20_04353 0.46 -1.1 4,547,135 + MPMX20_04353 0.46 +0.8 4,547,143 - MPMX20_04353 0.47 +1.0 4,547,143 - MPMX20_04353 0.47 -0.1 4,547,175 + MPMX20_04353 0.50 +0.4 4,547,175 + MPMX20_04353 0.50 +1.0 4,547,234 + MPMX20_04353 0.54 -0.3 4,547,235 - MPMX20_04353 0.55 -0.8 4,547,235 - MPMX20_04353 0.55 -1.5 4,547,263 + MPMX20_04353 0.57 -0.3 4,547,277 + MPMX20_04353 0.58 -1.2 4,547,428 + MPMX20_04353 0.70 -0.0 4,547,433 + MPMX20_04353 0.71 -0.6 4,547,441 - MPMX20_04353 0.71 -0.1 4,547,441 - MPMX20_04353 0.71 -1.2 4,547,441 - MPMX20_04353 0.71 -0.5 4,547,451 - MPMX20_04353 0.72 -1.5 4,547,500 - MPMX20_04353 0.76 +1.4 4,547,500 - MPMX20_04353 0.76 +0.3 4,547,539 + MPMX20_04353 0.79 -0.2 4,547,547 - MPMX20_04353 0.80 -0.7 4,547,552 - MPMX20_04353 0.81 +1.0 4,547,575 - MPMX20_04353 0.82 +1.4 4,547,580 + MPMX20_04353 0.83 -1.0 4,547,582 + MPMX20_04353 0.83 -0.5 4,547,582 + MPMX20_04353 0.83 +0.4 4,547,590 - MPMX20_04353 0.84 -0.8 4,547,590 - MPMX20_04353 0.84 -1.7 4,547,595 + MPMX20_04353 0.84 -0.8 4,547,598 + MPMX20_04353 0.84 -2.9 4,547,764 - -0.7 4,547,787 - -0.0 4,547,799 - -0.0 4,547,872 + -0.2 4,547,895 + -0.6 4,547,895 + -1.0 4,547,903 - -1.3 4,547,903 - +0.4 4,547,903 - -1.8 4,547,903 - +0.9 4,547,910 + -0.4 4,547,917 + -0.1 4,547,929 + +0.5 4,547,944 - +0.4 4,547,955 + +0.8 4,547,955 - -2.1 4,547,963 + -1.1 4,547,968 - -1.1 4,547,971 - -0.4 4,547,988 + +0.2 4,547,988 + -0.9 4,547,996 - -1.1 4,547,996 - +0.3 4,548,008 + +0.5 4,548,018 - -0.2 4,548,018 - -0.2 4,548,043 + MPMX20_04354 0.10 +0.2 4,548,111 + MPMX20_04354 0.17 -2.3 4,548,199 + MPMX20_04354 0.25 +0.6 4,548,207 - MPMX20_04354 0.26 -0.1 4,548,215 + MPMX20_04354 0.27 +0.5 4,548,220 + MPMX20_04354 0.27 -0.4 4,548,228 - MPMX20_04354 0.28 -1.1 4,548,228 - MPMX20_04354 0.28 -0.1 4,548,228 - MPMX20_04354 0.28 -0.2 4,548,228 - MPMX20_04354 0.28 -0.1 4,548,310 - MPMX20_04354 0.36 -1.0 4,548,328 + MPMX20_04354 0.38 +0.2 4,548,329 + MPMX20_04354 0.38 -0.4 4,548,329 + MPMX20_04354 0.38 +0.4 4,548,329 + MPMX20_04354 0.38 +0.9 4,548,336 - MPMX20_04354 0.38 +0.1 4,548,336 - MPMX20_04354 0.38 +0.2 4,548,337 - MPMX20_04354 0.38 +2.4 4,548,347 + MPMX20_04354 0.39 -0.5 4,548,381 + MPMX20_04354 0.43 +1.4 4,548,407 + MPMX20_04354 0.45 +0.3 4,548,418 + MPMX20_04354 0.46 +1.7 4,548,426 - MPMX20_04354 0.47 -0.4 4,548,451 - MPMX20_04354 0.49 +0.6 4,548,463 - MPMX20_04354 0.50 -0.1 4,548,485 + MPMX20_04354 0.53 +0.4 4,548,485 + MPMX20_04354 0.53 -0.1 4,548,485 + MPMX20_04354 0.53 +1.4 4,548,485 + MPMX20_04354 0.53 +0.8 4,548,485 + MPMX20_04354 0.53 -0.5 4,548,493 - MPMX20_04354 0.53 +0.8 4,548,493 - MPMX20_04354 0.53 -1.0 4,548,493 - MPMX20_04354 0.53 +0.5 4,548,493 - MPMX20_04354 0.53 -1.0 4,548,493 - MPMX20_04354 0.53 +2.5 4,548,493 - MPMX20_04354 0.53 +1.4 4,548,493 - MPMX20_04354 0.53 +0.9 4,548,498 + MPMX20_04354 0.54 +0.9 4,548,522 - MPMX20_04354 0.56 +1.4 4,548,544 + MPMX20_04354 0.58 -0.7 4,548,555 + MPMX20_04354 0.59 -0.6 4,548,575 - MPMX20_04354 0.61 +0.1 4,548,581 - MPMX20_04354 0.62 +2.9 4,548,604 + MPMX20_04354 0.64 -0.6 4,548,604 + MPMX20_04354 0.64 -0.3 4,548,604 + MPMX20_04354 0.64 -1.1 4,548,604 + MPMX20_04354 0.64 -1.2 4,548,604 + MPMX20_04354 0.64 -0.5 4,548,604 + MPMX20_04354 0.64 +0.8 4,548,612 - MPMX20_04354 0.65 -0.3 4,548,612 - MPMX20_04354 0.65 +1.4 4,548,612 - MPMX20_04354 0.65 -0.7 4,548,612 - MPMX20_04354 0.65 +1.4 4,548,622 - MPMX20_04354 0.66 +2.9 4,548,631 + MPMX20_04354 0.66 +1.4 4,548,658 + MPMX20_04354 0.69 -0.9 4,548,666 - MPMX20_04354 0.70 -1.4 4,548,666 - MPMX20_04354 0.70 -1.0 4,548,666 - MPMX20_04354 0.70 -1.0 4,548,701 + MPMX20_04354 0.73 -1.1 4,548,702 + MPMX20_04354 0.73 +0.2 4,548,721 + MPMX20_04354 0.75 +0.6 4,548,721 + MPMX20_04354 0.75 +0.0 4,548,733 + MPMX20_04354 0.76 +0.0 4,548,733 + MPMX20_04354 0.76 +0.4 4,548,733 + MPMX20_04354 0.76 +0.3 4,548,733 + MPMX20_04354 0.76 -2.1 4,548,733 + MPMX20_04354 0.76 +1.5 4,548,733 + MPMX20_04354 0.76 -0.4 4,548,733 + MPMX20_04354 0.76 -0.3 4,548,741 - MPMX20_04354 0.77 +0.7 4,548,752 + MPMX20_04354 0.78 +0.8 4,548,760 - MPMX20_04354 0.79 -0.2 4,548,765 + MPMX20_04354 0.79 -0.6 4,548,765 + MPMX20_04354 0.79 -1.6 4,548,775 + MPMX20_04354 0.80 -1.3 4,548,788 - MPMX20_04354 0.81 +0.8
Or see this region's nucleotide sequence