Experiment: 0.1X LB plate, Mixed culture; Bacillus pumilus TBS_104 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03423 and MPMX20_03424 overlap by 4 nucleotides MPMX20_03424 and MPMX20_03425 are separated by 1 nucleotides MPMX20_03425 and MPMX20_03426 are separated by 579 nucleotides
MPMX20_03423: MPMX20_03423 - Transcriptional regulatory protein QseF, at 3,607,948 to 3,609,285
_03423
MPMX20_03424: MPMX20_03424 - Quorum-sensing regulator protein G, at 3,609,282 to 3,610,031
_03424
MPMX20_03425: MPMX20_03425 - Sensor histidine kinase QseE, at 3,610,033 to 3,611,415
_03425
MPMX20_03426: MPMX20_03426 - Phosphoribosylformylglycinamidine synthase, at 3,611,995 to 3,615,882
_03426
Position (kb)
3610
3611
3612 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 3609.190 kb on + strand at 3609.195 kb on + strand at 3609.198 kb on - strand at 3609.234 kb on + strand at 3609.277 kb on - strand at 3609.296 kb on - strand at 3609.304 kb on - strand at 3609.346 kb on - strand at 3609.450 kb on + strand, within MPMX20_03424 at 3609.453 kb on - strand, within MPMX20_03424 at 3609.546 kb on + strand, within MPMX20_03424 at 3609.559 kb on + strand, within MPMX20_03424 at 3609.559 kb on + strand, within MPMX20_03424 at 3609.567 kb on - strand, within MPMX20_03424 at 3609.567 kb on - strand, within MPMX20_03424 at 3609.783 kb on - strand, within MPMX20_03424 at 3609.903 kb on + strand, within MPMX20_03424 at 3609.914 kb on + strand, within MPMX20_03424 at 3609.932 kb on + strand, within MPMX20_03424 at 3609.940 kb on - strand, within MPMX20_03424 at 3609.950 kb on - strand, within MPMX20_03424 at 3610.004 kb on + strand at 3610.012 kb on - strand at 3610.067 kb on - strand at 3610.067 kb on - strand at 3610.067 kb on - strand at 3610.067 kb on - strand at 3610.067 kb on - strand at 3610.072 kb on + strand at 3610.120 kb on - strand at 3610.144 kb on + strand at 3610.314 kb on + strand, within MPMX20_03425 at 3610.317 kb on + strand, within MPMX20_03425 at 3610.330 kb on - strand, within MPMX20_03425 at 3610.363 kb on + strand, within MPMX20_03425 at 3610.369 kb on - strand, within MPMX20_03425 at 3610.439 kb on + strand, within MPMX20_03425 at 3610.444 kb on + strand, within MPMX20_03425 at 3610.466 kb on + strand, within MPMX20_03425 at 3610.529 kb on + strand, within MPMX20_03425 at 3610.539 kb on - strand, within MPMX20_03425 at 3610.681 kb on - strand, within MPMX20_03425 at 3610.726 kb on - strand, within MPMX20_03425 at 3610.761 kb on + strand, within MPMX20_03425 at 3610.761 kb on + strand, within MPMX20_03425 at 3610.769 kb on - strand, within MPMX20_03425 at 3610.769 kb on - strand, within MPMX20_03425 at 3610.828 kb on - strand, within MPMX20_03425 at 3610.863 kb on + strand, within MPMX20_03425 at 3610.885 kb on - strand, within MPMX20_03425 at 3610.893 kb on - strand, within MPMX20_03425 at 3610.920 kb on - strand, within MPMX20_03425 at 3610.971 kb on + strand, within MPMX20_03425 at 3610.979 kb on - strand, within MPMX20_03425 at 3610.995 kb on - strand, within MPMX20_03425 at 3611.014 kb on - strand, within MPMX20_03425 at 3611.077 kb on + strand, within MPMX20_03425 at 3611.162 kb on - strand, within MPMX20_03425 at 3611.169 kb on + strand, within MPMX20_03425 at 3611.270 kb on + strand, within MPMX20_03425 at 3611.270 kb on + strand, within MPMX20_03425 at 3611.320 kb on + strand at 3611.381 kb on + strand at 3611.419 kb on + strand at 3611.489 kb on - strand at 3611.527 kb on - strand at 3611.527 kb on - strand at 3611.616 kb on - strand at 3612.065 kb on + strand at 3612.066 kb on + strand at 3612.091 kb on - strand at 3612.147 kb on - strand at 3612.169 kb on + strand at 3612.256 kb on + strand at 3612.261 kb on - strand at 3612.269 kb on - strand at 3612.352 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 0.1X LB plate, Mixed culture; Bacillus pumilus TBS_104 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct remove 3,609,190 + -1.0 3,609,195 + -1.2 3,609,198 - -1.1 3,609,234 + -0.7 3,609,277 - -1.0 3,609,296 - -2.9 3,609,304 - -0.0 3,609,346 - -1.8 3,609,450 + MPMX20_03424 0.22 -1.0 3,609,453 - MPMX20_03424 0.23 -1.7 3,609,546 + MPMX20_03424 0.35 +0.5 3,609,559 + MPMX20_03424 0.37 -2.6 3,609,559 + MPMX20_03424 0.37 +0.0 3,609,567 - MPMX20_03424 0.38 -2.0 3,609,567 - MPMX20_03424 0.38 -2.7 3,609,783 - MPMX20_03424 0.67 -1.3 3,609,903 + MPMX20_03424 0.83 -1.6 3,609,914 + MPMX20_03424 0.84 -2.3 3,609,932 + MPMX20_03424 0.87 -1.9 3,609,940 - MPMX20_03424 0.88 -0.1 3,609,950 - MPMX20_03424 0.89 -2.4 3,610,004 + -0.3 3,610,012 - -0.5 3,610,067 - -2.0 3,610,067 - -0.7 3,610,067 - -3.9 3,610,067 - +0.3 3,610,067 - +0.9 3,610,072 + -0.3 3,610,120 - -2.3 3,610,144 + -2.4 3,610,314 + MPMX20_03425 0.20 +0.3 3,610,317 + MPMX20_03425 0.21 -2.1 3,610,330 - MPMX20_03425 0.21 -1.3 3,610,363 + MPMX20_03425 0.24 -1.5 3,610,369 - MPMX20_03425 0.24 -1.2 3,610,439 + MPMX20_03425 0.29 +0.0 3,610,444 + MPMX20_03425 0.30 -0.4 3,610,466 + MPMX20_03425 0.31 -0.5 3,610,529 + MPMX20_03425 0.36 -1.5 3,610,539 - MPMX20_03425 0.37 +0.5 3,610,681 - MPMX20_03425 0.47 -2.7 3,610,726 - MPMX20_03425 0.50 -1.7 3,610,761 + MPMX20_03425 0.53 -0.6 3,610,761 + MPMX20_03425 0.53 +0.1 3,610,769 - MPMX20_03425 0.53 -2.9 3,610,769 - MPMX20_03425 0.53 -1.2 3,610,828 - MPMX20_03425 0.57 -1.5 3,610,863 + MPMX20_03425 0.60 -1.4 3,610,885 - MPMX20_03425 0.62 -0.4 3,610,893 - MPMX20_03425 0.62 -2.3 3,610,920 - MPMX20_03425 0.64 -2.7 3,610,971 + MPMX20_03425 0.68 -0.3 3,610,979 - MPMX20_03425 0.68 -2.7 3,610,995 - MPMX20_03425 0.70 -1.1 3,611,014 - MPMX20_03425 0.71 -0.5 3,611,077 + MPMX20_03425 0.75 -1.4 3,611,162 - MPMX20_03425 0.82 -0.5 3,611,169 + MPMX20_03425 0.82 -2.2 3,611,270 + MPMX20_03425 0.89 -1.2 3,611,270 + MPMX20_03425 0.89 -1.6 3,611,320 + -1.4 3,611,381 + -1.7 3,611,419 + -0.7 3,611,489 - -0.7 3,611,527 - +0.6 3,611,527 - -0.0 3,611,616 - +0.2 3,612,065 + +0.3 3,612,066 + -1.3 3,612,091 - -1.8 3,612,147 - -2.4 3,612,169 + +1.1 3,612,256 + -0.5 3,612,261 - +0.5 3,612,269 - +0.7 3,612,352 + +1.3
Or see this region's nucleotide sequence