Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03425

Experiment: 0.1X LB plate, Mixed culture; Bacillus pumilus TBS_104 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03423 and MPMX20_03424 overlap by 4 nucleotidesMPMX20_03424 and MPMX20_03425 are separated by 1 nucleotidesMPMX20_03425 and MPMX20_03426 are separated by 579 nucleotides MPMX20_03423: MPMX20_03423 - Transcriptional regulatory protein QseF, at 3,607,948 to 3,609,285 _03423 MPMX20_03424: MPMX20_03424 - Quorum-sensing regulator protein G, at 3,609,282 to 3,610,031 _03424 MPMX20_03425: MPMX20_03425 - Sensor histidine kinase QseE, at 3,610,033 to 3,611,415 _03425 MPMX20_03426: MPMX20_03426 - Phosphoribosylformylglycinamidine synthase, at 3,611,995 to 3,615,882 _03426 Position (kb) 3610 3611 3612Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3609.190 kb on + strandat 3609.195 kb on + strandat 3609.198 kb on - strandat 3609.234 kb on + strandat 3609.277 kb on - strandat 3609.296 kb on - strandat 3609.304 kb on - strandat 3609.346 kb on - strandat 3609.450 kb on + strand, within MPMX20_03424at 3609.453 kb on - strand, within MPMX20_03424at 3609.546 kb on + strand, within MPMX20_03424at 3609.559 kb on + strand, within MPMX20_03424at 3609.559 kb on + strand, within MPMX20_03424at 3609.567 kb on - strand, within MPMX20_03424at 3609.567 kb on - strand, within MPMX20_03424at 3609.783 kb on - strand, within MPMX20_03424at 3609.903 kb on + strand, within MPMX20_03424at 3609.914 kb on + strand, within MPMX20_03424at 3609.932 kb on + strand, within MPMX20_03424at 3609.940 kb on - strand, within MPMX20_03424at 3609.950 kb on - strand, within MPMX20_03424at 3610.004 kb on + strandat 3610.012 kb on - strandat 3610.067 kb on - strandat 3610.067 kb on - strandat 3610.067 kb on - strandat 3610.067 kb on - strandat 3610.067 kb on - strandat 3610.072 kb on + strandat 3610.120 kb on - strandat 3610.144 kb on + strandat 3610.314 kb on + strand, within MPMX20_03425at 3610.317 kb on + strand, within MPMX20_03425at 3610.330 kb on - strand, within MPMX20_03425at 3610.363 kb on + strand, within MPMX20_03425at 3610.369 kb on - strand, within MPMX20_03425at 3610.439 kb on + strand, within MPMX20_03425at 3610.444 kb on + strand, within MPMX20_03425at 3610.466 kb on + strand, within MPMX20_03425at 3610.529 kb on + strand, within MPMX20_03425at 3610.539 kb on - strand, within MPMX20_03425at 3610.681 kb on - strand, within MPMX20_03425at 3610.726 kb on - strand, within MPMX20_03425at 3610.761 kb on + strand, within MPMX20_03425at 3610.761 kb on + strand, within MPMX20_03425at 3610.769 kb on - strand, within MPMX20_03425at 3610.769 kb on - strand, within MPMX20_03425at 3610.828 kb on - strand, within MPMX20_03425at 3610.863 kb on + strand, within MPMX20_03425at 3610.885 kb on - strand, within MPMX20_03425at 3610.893 kb on - strand, within MPMX20_03425at 3610.920 kb on - strand, within MPMX20_03425at 3610.971 kb on + strand, within MPMX20_03425at 3610.979 kb on - strand, within MPMX20_03425at 3610.995 kb on - strand, within MPMX20_03425at 3611.014 kb on - strand, within MPMX20_03425at 3611.077 kb on + strand, within MPMX20_03425at 3611.162 kb on - strand, within MPMX20_03425at 3611.169 kb on + strand, within MPMX20_03425at 3611.270 kb on + strand, within MPMX20_03425at 3611.270 kb on + strand, within MPMX20_03425at 3611.320 kb on + strandat 3611.381 kb on + strandat 3611.419 kb on + strandat 3611.489 kb on - strandat 3611.527 kb on - strandat 3611.527 kb on - strandat 3611.616 kb on - strandat 3612.065 kb on + strandat 3612.066 kb on + strandat 3612.091 kb on - strandat 3612.147 kb on - strandat 3612.169 kb on + strandat 3612.256 kb on + strandat 3612.261 kb on - strandat 3612.269 kb on - strandat 3612.352 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 0.1X LB plate, Mixed culture; Bacillus pumilus TBS_104 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
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3,609,190 + -1.0
3,609,195 + -1.2
3,609,198 - -1.1
3,609,234 + -0.7
3,609,277 - -1.0
3,609,296 - -2.9
3,609,304 - -0.0
3,609,346 - -1.8
3,609,450 + MPMX20_03424 0.22 -1.0
3,609,453 - MPMX20_03424 0.23 -1.7
3,609,546 + MPMX20_03424 0.35 +0.5
3,609,559 + MPMX20_03424 0.37 -2.6
3,609,559 + MPMX20_03424 0.37 +0.0
3,609,567 - MPMX20_03424 0.38 -2.0
3,609,567 - MPMX20_03424 0.38 -2.7
3,609,783 - MPMX20_03424 0.67 -1.3
3,609,903 + MPMX20_03424 0.83 -1.6
3,609,914 + MPMX20_03424 0.84 -2.3
3,609,932 + MPMX20_03424 0.87 -1.9
3,609,940 - MPMX20_03424 0.88 -0.1
3,609,950 - MPMX20_03424 0.89 -2.4
3,610,004 + -0.3
3,610,012 - -0.5
3,610,067 - -2.0
3,610,067 - -0.7
3,610,067 - -3.9
3,610,067 - +0.3
3,610,067 - +0.9
3,610,072 + -0.3
3,610,120 - -2.3
3,610,144 + -2.4
3,610,314 + MPMX20_03425 0.20 +0.3
3,610,317 + MPMX20_03425 0.21 -2.1
3,610,330 - MPMX20_03425 0.21 -1.3
3,610,363 + MPMX20_03425 0.24 -1.5
3,610,369 - MPMX20_03425 0.24 -1.2
3,610,439 + MPMX20_03425 0.29 +0.0
3,610,444 + MPMX20_03425 0.30 -0.4
3,610,466 + MPMX20_03425 0.31 -0.5
3,610,529 + MPMX20_03425 0.36 -1.5
3,610,539 - MPMX20_03425 0.37 +0.5
3,610,681 - MPMX20_03425 0.47 -2.7
3,610,726 - MPMX20_03425 0.50 -1.7
3,610,761 + MPMX20_03425 0.53 -0.6
3,610,761 + MPMX20_03425 0.53 +0.1
3,610,769 - MPMX20_03425 0.53 -2.9
3,610,769 - MPMX20_03425 0.53 -1.2
3,610,828 - MPMX20_03425 0.57 -1.5
3,610,863 + MPMX20_03425 0.60 -1.4
3,610,885 - MPMX20_03425 0.62 -0.4
3,610,893 - MPMX20_03425 0.62 -2.3
3,610,920 - MPMX20_03425 0.64 -2.7
3,610,971 + MPMX20_03425 0.68 -0.3
3,610,979 - MPMX20_03425 0.68 -2.7
3,610,995 - MPMX20_03425 0.70 -1.1
3,611,014 - MPMX20_03425 0.71 -0.5
3,611,077 + MPMX20_03425 0.75 -1.4
3,611,162 - MPMX20_03425 0.82 -0.5
3,611,169 + MPMX20_03425 0.82 -2.2
3,611,270 + MPMX20_03425 0.89 -1.2
3,611,270 + MPMX20_03425 0.89 -1.6
3,611,320 + -1.4
3,611,381 + -1.7
3,611,419 + -0.7
3,611,489 - -0.7
3,611,527 - +0.6
3,611,527 - -0.0
3,611,616 - +0.2
3,612,065 + +0.3
3,612,066 + -1.3
3,612,091 - -1.8
3,612,147 - -2.4
3,612,169 + +1.1
3,612,256 + -0.5
3,612,261 - +0.5
3,612,269 - +0.7
3,612,352 + +1.3

Or see this region's nucleotide sequence