Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04484

Experiment: TSB plate, Mixed culture; Bacillus pumilus TBS_104 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_04483 and MPMX20_04484 are separated by 1 nucleotidesMPMX20_04484 and MPMX20_04485 are separated by 4 nucleotidesMPMX20_04485 and MPMX20_04486 overlap by 4 nucleotides MPMX20_04483: MPMX20_04483 - Lipid III flippase, at 4,686,901 to 4,688,151 _04483 MPMX20_04484: MPMX20_04484 - dTDP-4-amino-4,6-dideoxygalactose transaminase, at 4,688,153 to 4,689,283 _04484 MPMX20_04485: MPMX20_04485 - dTDP-fucosamine acetyltransferase, at 4,689,288 to 4,689,965 _04485 MPMX20_04486: MPMX20_04486 - UDP-N-acetyl-D-mannosamine dehydrogenase, at 4,689,962 to 4,691,224 _04486 Position (kb) 4688 4689 4690Strain fitness (log2 ratio) -3 -2 -1 0 1at 4687.166 kb on + strand, within MPMX20_04483at 4687.236 kb on + strand, within MPMX20_04483at 4687.251 kb on + strand, within MPMX20_04483at 4687.411 kb on + strand, within MPMX20_04483at 4687.464 kb on + strand, within MPMX20_04483at 4687.540 kb on - strand, within MPMX20_04483at 4687.551 kb on - strand, within MPMX20_04483at 4687.827 kb on + strand, within MPMX20_04483at 4687.828 kb on + strand, within MPMX20_04483at 4687.833 kb on + strand, within MPMX20_04483at 4687.841 kb on - strand, within MPMX20_04483at 4687.911 kb on - strand, within MPMX20_04483at 4687.919 kb on + strand, within MPMX20_04483at 4687.999 kb on + strand, within MPMX20_04483at 4688.009 kb on + strand, within MPMX20_04483at 4688.009 kb on + strand, within MPMX20_04483at 4688.122 kb on + strandat 4688.175 kb on + strandat 4688.183 kb on - strandat 4688.197 kb on - strandat 4688.202 kb on + strandat 4688.211 kb on + strandat 4688.229 kb on - strandat 4688.264 kb on - strandat 4688.358 kb on - strand, within MPMX20_04484at 4688.358 kb on - strand, within MPMX20_04484at 4688.400 kb on + strand, within MPMX20_04484at 4688.447 kb on - strand, within MPMX20_04484at 4688.538 kb on + strand, within MPMX20_04484at 4688.538 kb on + strand, within MPMX20_04484at 4688.546 kb on - strand, within MPMX20_04484at 4688.546 kb on - strand, within MPMX20_04484at 4688.546 kb on - strand, within MPMX20_04484at 4688.609 kb on + strand, within MPMX20_04484at 4688.616 kb on - strand, within MPMX20_04484at 4688.679 kb on + strand, within MPMX20_04484at 4688.697 kb on - strand, within MPMX20_04484at 4688.697 kb on - strand, within MPMX20_04484at 4688.697 kb on - strand, within MPMX20_04484at 4688.755 kb on + strand, within MPMX20_04484at 4688.755 kb on + strand, within MPMX20_04484at 4688.824 kb on - strand, within MPMX20_04484at 4688.896 kb on - strand, within MPMX20_04484at 4688.919 kb on - strand, within MPMX20_04484at 4688.958 kb on + strand, within MPMX20_04484at 4689.016 kb on + strand, within MPMX20_04484at 4689.016 kb on + strand, within MPMX20_04484at 4689.019 kb on - strand, within MPMX20_04484at 4689.024 kb on - strand, within MPMX20_04484at 4689.037 kb on + strand, within MPMX20_04484at 4689.052 kb on - strand, within MPMX20_04484at 4689.117 kb on + strand, within MPMX20_04484at 4689.193 kb on - strandat 4689.218 kb on + strandat 4689.218 kb on + strandat 4689.218 kb on + strandat 4689.226 kb on - strandat 4689.226 kb on - strandat 4689.374 kb on - strand, within MPMX20_04485at 4689.374 kb on - strand, within MPMX20_04485at 4689.388 kb on + strand, within MPMX20_04485at 4689.414 kb on + strand, within MPMX20_04485at 4689.450 kb on + strand, within MPMX20_04485at 4689.479 kb on + strand, within MPMX20_04485at 4689.554 kb on + strand, within MPMX20_04485at 4689.617 kb on + strand, within MPMX20_04485at 4689.621 kb on + strand, within MPMX20_04485at 4689.629 kb on - strand, within MPMX20_04485at 4689.654 kb on + strand, within MPMX20_04485at 4689.685 kb on - strand, within MPMX20_04485at 4689.687 kb on + strand, within MPMX20_04485at 4689.687 kb on + strand, within MPMX20_04485at 4689.690 kb on - strand, within MPMX20_04485at 4689.754 kb on - strand, within MPMX20_04485at 4689.754 kb on - strand, within MPMX20_04485at 4689.757 kb on + strand, within MPMX20_04485at 4689.765 kb on - strand, within MPMX20_04485at 4689.775 kb on - strand, within MPMX20_04485at 4689.808 kb on - strand, within MPMX20_04485at 4689.861 kb on + strand, within MPMX20_04485at 4689.861 kb on + strand, within MPMX20_04485at 4689.906 kb on - strandat 4690.003 kb on - strandat 4690.006 kb on + strandat 4690.174 kb on - strand, within MPMX20_04486at 4690.176 kb on + strand, within MPMX20_04486at 4690.184 kb on - strand, within MPMX20_04486at 4690.243 kb on + strand, within MPMX20_04486at 4690.243 kb on + strand, within MPMX20_04486at 4690.243 kb on + strand, within MPMX20_04486at 4690.251 kb on - strand, within MPMX20_04486

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB plate, Mixed culture; Bacillus pumilus TBS_104 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
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4,687,166 + MPMX20_04483 0.21 -0.3
4,687,236 + MPMX20_04483 0.27 -2.1
4,687,251 + MPMX20_04483 0.28 -1.7
4,687,411 + MPMX20_04483 0.41 -0.3
4,687,464 + MPMX20_04483 0.45 -1.7
4,687,540 - MPMX20_04483 0.51 -1.0
4,687,551 - MPMX20_04483 0.52 +1.3
4,687,827 + MPMX20_04483 0.74 -2.5
4,687,828 + MPMX20_04483 0.74 -1.3
4,687,833 + MPMX20_04483 0.75 -2.0
4,687,841 - MPMX20_04483 0.75 -2.1
4,687,911 - MPMX20_04483 0.81 -1.8
4,687,919 + MPMX20_04483 0.81 -2.9
4,687,999 + MPMX20_04483 0.88 -2.9
4,688,009 + MPMX20_04483 0.89 -0.7
4,688,009 + MPMX20_04483 0.89 -3.5
4,688,122 + -2.5
4,688,175 + -1.9
4,688,183 - -0.4
4,688,197 - -1.5
4,688,202 + +1.7
4,688,211 + -0.7
4,688,229 - +0.1
4,688,264 - -0.7
4,688,358 - MPMX20_04484 0.18 -2.4
4,688,358 - MPMX20_04484 0.18 -2.0
4,688,400 + MPMX20_04484 0.22 -1.6
4,688,447 - MPMX20_04484 0.26 -2.1
4,688,538 + MPMX20_04484 0.34 -0.2
4,688,538 + MPMX20_04484 0.34 -0.7
4,688,546 - MPMX20_04484 0.35 -1.0
4,688,546 - MPMX20_04484 0.35 -2.9
4,688,546 - MPMX20_04484 0.35 +0.3
4,688,609 + MPMX20_04484 0.40 -0.2
4,688,616 - MPMX20_04484 0.41 -1.5
4,688,679 + MPMX20_04484 0.47 -1.9
4,688,697 - MPMX20_04484 0.48 +1.3
4,688,697 - MPMX20_04484 0.48 -0.5
4,688,697 - MPMX20_04484 0.48 -3.0
4,688,755 + MPMX20_04484 0.53 -2.6
4,688,755 + MPMX20_04484 0.53 -2.6
4,688,824 - MPMX20_04484 0.59 -1.8
4,688,896 - MPMX20_04484 0.66 +0.0
4,688,919 - MPMX20_04484 0.68 -2.0
4,688,958 + MPMX20_04484 0.71 -2.1
4,689,016 + MPMX20_04484 0.76 -1.2
4,689,016 + MPMX20_04484 0.76 -0.8
4,689,019 - MPMX20_04484 0.77 -1.0
4,689,024 - MPMX20_04484 0.77 -0.7
4,689,037 + MPMX20_04484 0.78 -2.7
4,689,052 - MPMX20_04484 0.79 -2.1
4,689,117 + MPMX20_04484 0.85 -2.4
4,689,193 - -0.7
4,689,218 + -1.5
4,689,218 + -1.5
4,689,218 + -0.3
4,689,226 - -0.7
4,689,226 - -0.3
4,689,374 - MPMX20_04485 0.13 -2.5
4,689,374 - MPMX20_04485 0.13 +0.6
4,689,388 + MPMX20_04485 0.15 +0.0
4,689,414 + MPMX20_04485 0.19 -1.8
4,689,450 + MPMX20_04485 0.24 -1.0
4,689,479 + MPMX20_04485 0.28 -1.3
4,689,554 + MPMX20_04485 0.39 -3.3
4,689,617 + MPMX20_04485 0.49 +0.3
4,689,621 + MPMX20_04485 0.49 +0.3
4,689,629 - MPMX20_04485 0.50 -2.3
4,689,654 + MPMX20_04485 0.54 -0.9
4,689,685 - MPMX20_04485 0.59 +0.3
4,689,687 + MPMX20_04485 0.59 -0.3
4,689,687 + MPMX20_04485 0.59 -1.0
4,689,690 - MPMX20_04485 0.59 -2.6
4,689,754 - MPMX20_04485 0.69 -2.6
4,689,754 - MPMX20_04485 0.69 -2.9
4,689,757 + MPMX20_04485 0.69 -1.3
4,689,765 - MPMX20_04485 0.70 -2.1
4,689,775 - MPMX20_04485 0.72 -0.3
4,689,808 - MPMX20_04485 0.77 -1.2
4,689,861 + MPMX20_04485 0.85 -1.0
4,689,861 + MPMX20_04485 0.85 -1.8
4,689,906 - -1.8
4,690,003 - -0.7
4,690,006 + -1.5
4,690,174 - MPMX20_04486 0.17 -0.8
4,690,176 + MPMX20_04486 0.17 -1.7
4,690,184 - MPMX20_04486 0.18 -1.2
4,690,243 + MPMX20_04486 0.22 -1.8
4,690,243 + MPMX20_04486 0.22 -2.4
4,690,243 + MPMX20_04486 0.22 +1.5
4,690,251 - MPMX20_04486 0.23 -1.8

Or see this region's nucleotide sequence