Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_02798

Experiment: TSB plate, Mixed culture; Bacillus pumilus TBS_104 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_02796 and MPMX20_02797 are separated by 189 nucleotidesMPMX20_02797 and MPMX20_02798 are separated by 19 nucleotidesMPMX20_02798 and MPMX20_02799 are separated by 4 nucleotidesMPMX20_02799 and MPMX20_02800 overlap by 4 nucleotides MPMX20_02796: MPMX20_02796 - C4-dicarboxylate transport protein, at 2,953,304 to 2,954,563 _02796 MPMX20_02797: MPMX20_02797 - Chemotaxis protein CheW, at 2,954,753 to 2,955,256 _02797 MPMX20_02798: MPMX20_02798 - Chemotaxis protein CheA, at 2,955,276 to 2,957,309 _02798 MPMX20_02799: MPMX20_02799 - Motility protein B, at 2,957,314 to 2,958,243 _02799 MPMX20_02800: MPMX20_02800 - Motility protein A, at 2,958,240 to 2,959,127 _02800 Position (kb) 2955 2956 2957 2958Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 2954.282 kb on + strand, within MPMX20_02796at 2954.287 kb on - strand, within MPMX20_02796at 2954.298 kb on + strand, within MPMX20_02796at 2954.306 kb on - strand, within MPMX20_02796at 2954.348 kb on - strand, within MPMX20_02796at 2954.589 kb on + strandat 2954.589 kb on + strandat 2954.589 kb on + strandat 2954.589 kb on + strandat 2954.597 kb on - strandat 2954.597 kb on - strandat 2954.597 kb on - strandat 2954.597 kb on - strandat 2954.633 kb on + strandat 2954.653 kb on - strandat 2954.735 kb on - strandat 2954.758 kb on - strandat 2954.796 kb on + strandat 2954.799 kb on - strandat 2954.809 kb on - strand, within MPMX20_02797at 2954.809 kb on - strand, within MPMX20_02797at 2954.921 kb on + strand, within MPMX20_02797at 2954.930 kb on + strand, within MPMX20_02797at 2954.964 kb on + strand, within MPMX20_02797at 2955.046 kb on + strand, within MPMX20_02797at 2955.046 kb on + strand, within MPMX20_02797at 2955.046 kb on + strand, within MPMX20_02797at 2955.046 kb on + strand, within MPMX20_02797at 2955.051 kb on + strand, within MPMX20_02797at 2955.051 kb on + strand, within MPMX20_02797at 2955.054 kb on - strand, within MPMX20_02797at 2955.054 kb on - strand, within MPMX20_02797at 2955.054 kb on - strand, within MPMX20_02797at 2955.054 kb on - strand, within MPMX20_02797at 2955.054 kb on - strand, within MPMX20_02797at 2955.061 kb on + strand, within MPMX20_02797at 2955.061 kb on + strand, within MPMX20_02797at 2955.061 kb on + strand, within MPMX20_02797at 2955.061 kb on + strand, within MPMX20_02797at 2955.088 kb on - strand, within MPMX20_02797at 2955.116 kb on + strand, within MPMX20_02797at 2955.118 kb on + strand, within MPMX20_02797at 2955.126 kb on - strand, within MPMX20_02797at 2955.172 kb on + strand, within MPMX20_02797at 2955.182 kb on + strand, within MPMX20_02797at 2955.203 kb on + strand, within MPMX20_02797at 2955.264 kb on + strandat 2955.271 kb on - strandat 2955.283 kb on + strandat 2955.283 kb on + strandat 2955.344 kb on + strandat 2955.357 kb on - strandat 2955.368 kb on - strandat 2955.368 kb on - strandat 2955.368 kb on - strandat 2955.424 kb on + strandat 2955.427 kb on + strandat 2955.427 kb on + strandat 2955.432 kb on - strandat 2955.435 kb on - strandat 2955.581 kb on + strand, within MPMX20_02798at 2955.581 kb on + strand, within MPMX20_02798at 2955.589 kb on - strand, within MPMX20_02798at 2955.623 kb on - strand, within MPMX20_02798at 2955.731 kb on + strand, within MPMX20_02798at 2955.920 kb on + strand, within MPMX20_02798at 2955.963 kb on + strand, within MPMX20_02798at 2955.963 kb on + strand, within MPMX20_02798at 2955.963 kb on + strand, within MPMX20_02798at 2955.963 kb on + strand, within MPMX20_02798at 2955.963 kb on + strand, within MPMX20_02798at 2955.963 kb on + strand, within MPMX20_02798at 2955.963 kb on + strand, within MPMX20_02798at 2956.092 kb on + strand, within MPMX20_02798at 2956.099 kb on - strand, within MPMX20_02798at 2956.157 kb on + strand, within MPMX20_02798at 2956.316 kb on + strand, within MPMX20_02798at 2956.316 kb on + strand, within MPMX20_02798at 2956.405 kb on + strand, within MPMX20_02798at 2956.430 kb on - strand, within MPMX20_02798at 2956.592 kb on - strand, within MPMX20_02798at 2956.594 kb on + strand, within MPMX20_02798at 2956.673 kb on + strand, within MPMX20_02798at 2956.719 kb on + strand, within MPMX20_02798at 2956.761 kb on - strand, within MPMX20_02798at 2956.811 kb on - strand, within MPMX20_02798at 2956.811 kb on - strand, within MPMX20_02798at 2956.933 kb on + strand, within MPMX20_02798at 2956.941 kb on - strand, within MPMX20_02798at 2956.958 kb on + strand, within MPMX20_02798at 2956.966 kb on - strand, within MPMX20_02798at 2957.056 kb on + strand, within MPMX20_02798at 2957.056 kb on + strand, within MPMX20_02798at 2957.074 kb on - strand, within MPMX20_02798at 2957.173 kb on + strandat 2957.185 kb on + strandat 2957.193 kb on - strandat 2957.193 kb on - strandat 2957.193 kb on - strandat 2957.193 kb on - strandat 2957.203 kb on - strandat 2957.240 kb on - strandat 2957.240 kb on - strandat 2957.253 kb on + strandat 2957.363 kb on + strandat 2957.373 kb on + strandat 2957.381 kb on - strandat 2957.451 kb on + strand, within MPMX20_02799at 2957.535 kb on + strand, within MPMX20_02799at 2957.555 kb on - strand, within MPMX20_02799at 2957.558 kb on + strand, within MPMX20_02799at 2957.566 kb on - strand, within MPMX20_02799at 2957.619 kb on + strand, within MPMX20_02799at 2957.623 kb on + strand, within MPMX20_02799at 2957.623 kb on - strand, within MPMX20_02799at 2957.631 kb on - strand, within MPMX20_02799at 2957.677 kb on + strand, within MPMX20_02799at 2957.677 kb on - strand, within MPMX20_02799at 2957.687 kb on - strand, within MPMX20_02799at 2957.700 kb on + strand, within MPMX20_02799at 2957.708 kb on - strand, within MPMX20_02799at 2957.708 kb on - strand, within MPMX20_02799at 2957.804 kb on + strand, within MPMX20_02799at 2957.889 kb on + strand, within MPMX20_02799at 2957.945 kb on + strand, within MPMX20_02799at 2957.959 kb on + strand, within MPMX20_02799at 2958.033 kb on + strand, within MPMX20_02799at 2958.106 kb on - strand, within MPMX20_02799at 2958.188 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction TSB plate, Mixed culture; Bacillus pumilus TBS_104 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
remove
2,954,282 + MPMX20_02796 0.78 -0.8
2,954,287 - MPMX20_02796 0.78 -0.1
2,954,298 + MPMX20_02796 0.79 +0.2
2,954,306 - MPMX20_02796 0.80 +1.0
2,954,348 - MPMX20_02796 0.83 -1.1
2,954,589 + +1.3
2,954,589 + +0.9
2,954,589 + -0.7
2,954,589 + +1.4
2,954,597 - -0.3
2,954,597 - -0.1
2,954,597 - -0.8
2,954,597 - +0.3
2,954,633 + -0.1
2,954,653 - -0.4
2,954,735 - -1.8
2,954,758 - +0.6
2,954,796 + -0.1
2,954,799 - -0.7
2,954,809 - MPMX20_02797 0.11 -0.8
2,954,809 - MPMX20_02797 0.11 -1.1
2,954,921 + MPMX20_02797 0.33 -0.3
2,954,930 + MPMX20_02797 0.35 +0.8
2,954,964 + MPMX20_02797 0.42 -0.5
2,955,046 + MPMX20_02797 0.58 -0.7
2,955,046 + MPMX20_02797 0.58 -0.1
2,955,046 + MPMX20_02797 0.58 -0.6
2,955,046 + MPMX20_02797 0.58 +0.2
2,955,051 + MPMX20_02797 0.59 +4.6
2,955,051 + MPMX20_02797 0.59 +0.5
2,955,054 - MPMX20_02797 0.60 +0.2
2,955,054 - MPMX20_02797 0.60 -0.7
2,955,054 - MPMX20_02797 0.60 -0.1
2,955,054 - MPMX20_02797 0.60 -0.4
2,955,054 - MPMX20_02797 0.60 +0.6
2,955,061 + MPMX20_02797 0.61 +0.7
2,955,061 + MPMX20_02797 0.61 -1.2
2,955,061 + MPMX20_02797 0.61 +1.6
2,955,061 + MPMX20_02797 0.61 +2.6
2,955,088 - MPMX20_02797 0.66 -0.0
2,955,116 + MPMX20_02797 0.72 +0.8
2,955,118 + MPMX20_02797 0.72 +0.4
2,955,126 - MPMX20_02797 0.74 -0.0
2,955,172 + MPMX20_02797 0.83 -1.8
2,955,182 + MPMX20_02797 0.85 +2.3
2,955,203 + MPMX20_02797 0.89 +0.2
2,955,264 + +0.7
2,955,271 - +0.6
2,955,283 + -0.3
2,955,283 + -2.9
2,955,344 + +0.8
2,955,357 - -0.7
2,955,368 - -0.1
2,955,368 - -0.4
2,955,368 - +0.3
2,955,424 + -0.8
2,955,427 + +0.2
2,955,427 + +2.1
2,955,432 - +1.1
2,955,435 - +0.0
2,955,581 + MPMX20_02798 0.15 +0.2
2,955,581 + MPMX20_02798 0.15 +0.1
2,955,589 - MPMX20_02798 0.15 +1.1
2,955,623 - MPMX20_02798 0.17 -1.8
2,955,731 + MPMX20_02798 0.22 +0.1
2,955,920 + MPMX20_02798 0.32 +1.3
2,955,963 + MPMX20_02798 0.34 -0.1
2,955,963 + MPMX20_02798 0.34 +1.9
2,955,963 + MPMX20_02798 0.34 -0.1
2,955,963 + MPMX20_02798 0.34 +1.4
2,955,963 + MPMX20_02798 0.34 -0.2
2,955,963 + MPMX20_02798 0.34 -0.1
2,955,963 + MPMX20_02798 0.34 -0.1
2,956,092 + MPMX20_02798 0.40 +0.0
2,956,099 - MPMX20_02798 0.40 -0.1
2,956,157 + MPMX20_02798 0.43 +0.6
2,956,316 + MPMX20_02798 0.51 +1.0
2,956,316 + MPMX20_02798 0.51 +1.3
2,956,405 + MPMX20_02798 0.56 +5.0
2,956,430 - MPMX20_02798 0.57 -0.4
2,956,592 - MPMX20_02798 0.65 -0.7
2,956,594 + MPMX20_02798 0.65 -2.4
2,956,673 + MPMX20_02798 0.69 +3.0
2,956,719 + MPMX20_02798 0.71 -0.4
2,956,761 - MPMX20_02798 0.73 -0.4
2,956,811 - MPMX20_02798 0.75 -1.7
2,956,811 - MPMX20_02798 0.75 -0.0
2,956,933 + MPMX20_02798 0.81 +1.1
2,956,941 - MPMX20_02798 0.82 +2.9
2,956,958 + MPMX20_02798 0.83 -0.7
2,956,966 - MPMX20_02798 0.83 -1.2
2,957,056 + MPMX20_02798 0.88 +0.6
2,957,056 + MPMX20_02798 0.88 -1.6
2,957,074 - MPMX20_02798 0.88 +0.8
2,957,173 + +2.3
2,957,185 + +1.0
2,957,193 - +1.3
2,957,193 - -1.1
2,957,193 - +0.4
2,957,193 - +1.2
2,957,203 - -0.8
2,957,240 - -0.7
2,957,240 - -0.5
2,957,253 + +1.0
2,957,363 + +0.3
2,957,373 + +0.3
2,957,381 - +0.7
2,957,451 + MPMX20_02799 0.15 +1.6
2,957,535 + MPMX20_02799 0.24 +1.2
2,957,555 - MPMX20_02799 0.26 -0.3
2,957,558 + MPMX20_02799 0.26 -0.1
2,957,566 - MPMX20_02799 0.27 +1.3
2,957,619 + MPMX20_02799 0.33 -1.0
2,957,623 + MPMX20_02799 0.33 -0.1
2,957,623 - MPMX20_02799 0.33 -1.3
2,957,631 - MPMX20_02799 0.34 -0.2
2,957,677 + MPMX20_02799 0.39 +1.2
2,957,677 - MPMX20_02799 0.39 +0.3
2,957,687 - MPMX20_02799 0.40 -0.3
2,957,700 + MPMX20_02799 0.42 +0.6
2,957,708 - MPMX20_02799 0.42 -0.6
2,957,708 - MPMX20_02799 0.42 -0.5
2,957,804 + MPMX20_02799 0.53 +0.5
2,957,889 + MPMX20_02799 0.62 +1.1
2,957,945 + MPMX20_02799 0.68 -0.5
2,957,959 + MPMX20_02799 0.69 +0.3
2,958,033 + MPMX20_02799 0.77 -0.1
2,958,106 - MPMX20_02799 0.85 +0.3
2,958,188 + -1.5

Or see this region's nucleotide sequence