Experiment: TSB plate, Mixed culture; Bacillus pumilus TBS_104 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02796 and MPMX20_02797 are separated by 189 nucleotides MPMX20_02797 and MPMX20_02798 are separated by 19 nucleotides MPMX20_02798 and MPMX20_02799 are separated by 4 nucleotides MPMX20_02799 and MPMX20_02800 overlap by 4 nucleotides
MPMX20_02796: MPMX20_02796 - C4-dicarboxylate transport protein, at 2,953,304 to 2,954,563
_02796
MPMX20_02797: MPMX20_02797 - Chemotaxis protein CheW, at 2,954,753 to 2,955,256
_02797
MPMX20_02798: MPMX20_02798 - Chemotaxis protein CheA, at 2,955,276 to 2,957,309
_02798
MPMX20_02799: MPMX20_02799 - Motility protein B, at 2,957,314 to 2,958,243
_02799
MPMX20_02800: MPMX20_02800 - Motility protein A, at 2,958,240 to 2,959,127
_02800
Position (kb)
2955
2956
2957
2958 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5 at 2954.282 kb on + strand, within MPMX20_02796 at 2954.287 kb on - strand, within MPMX20_02796 at 2954.298 kb on + strand, within MPMX20_02796 at 2954.306 kb on - strand, within MPMX20_02796 at 2954.348 kb on - strand, within MPMX20_02796 at 2954.589 kb on + strand at 2954.589 kb on + strand at 2954.589 kb on + strand at 2954.589 kb on + strand at 2954.597 kb on - strand at 2954.597 kb on - strand at 2954.597 kb on - strand at 2954.597 kb on - strand at 2954.633 kb on + strand at 2954.653 kb on - strand at 2954.735 kb on - strand at 2954.758 kb on - strand at 2954.796 kb on + strand at 2954.799 kb on - strand at 2954.809 kb on - strand, within MPMX20_02797 at 2954.809 kb on - strand, within MPMX20_02797 at 2954.921 kb on + strand, within MPMX20_02797 at 2954.930 kb on + strand, within MPMX20_02797 at 2954.964 kb on + strand, within MPMX20_02797 at 2955.046 kb on + strand, within MPMX20_02797 at 2955.046 kb on + strand, within MPMX20_02797 at 2955.046 kb on + strand, within MPMX20_02797 at 2955.046 kb on + strand, within MPMX20_02797 at 2955.051 kb on + strand, within MPMX20_02797 at 2955.051 kb on + strand, within MPMX20_02797 at 2955.054 kb on - strand, within MPMX20_02797 at 2955.054 kb on - strand, within MPMX20_02797 at 2955.054 kb on - strand, within MPMX20_02797 at 2955.054 kb on - strand, within MPMX20_02797 at 2955.054 kb on - strand, within MPMX20_02797 at 2955.061 kb on + strand, within MPMX20_02797 at 2955.061 kb on + strand, within MPMX20_02797 at 2955.061 kb on + strand, within MPMX20_02797 at 2955.061 kb on + strand, within MPMX20_02797 at 2955.088 kb on - strand, within MPMX20_02797 at 2955.116 kb on + strand, within MPMX20_02797 at 2955.118 kb on + strand, within MPMX20_02797 at 2955.126 kb on - strand, within MPMX20_02797 at 2955.172 kb on + strand, within MPMX20_02797 at 2955.182 kb on + strand, within MPMX20_02797 at 2955.203 kb on + strand, within MPMX20_02797 at 2955.264 kb on + strand at 2955.271 kb on - strand at 2955.283 kb on + strand at 2955.283 kb on + strand at 2955.344 kb on + strand at 2955.357 kb on - strand at 2955.368 kb on - strand at 2955.368 kb on - strand at 2955.368 kb on - strand at 2955.424 kb on + strand at 2955.427 kb on + strand at 2955.427 kb on + strand at 2955.432 kb on - strand at 2955.435 kb on - strand at 2955.581 kb on + strand, within MPMX20_02798 at 2955.581 kb on + strand, within MPMX20_02798 at 2955.589 kb on - strand, within MPMX20_02798 at 2955.623 kb on - strand, within MPMX20_02798 at 2955.731 kb on + strand, within MPMX20_02798 at 2955.920 kb on + strand, within MPMX20_02798 at 2955.963 kb on + strand, within MPMX20_02798 at 2955.963 kb on + strand, within MPMX20_02798 at 2955.963 kb on + strand, within MPMX20_02798 at 2955.963 kb on + strand, within MPMX20_02798 at 2955.963 kb on + strand, within MPMX20_02798 at 2955.963 kb on + strand, within MPMX20_02798 at 2955.963 kb on + strand, within MPMX20_02798 at 2956.092 kb on + strand, within MPMX20_02798 at 2956.099 kb on - strand, within MPMX20_02798 at 2956.157 kb on + strand, within MPMX20_02798 at 2956.316 kb on + strand, within MPMX20_02798 at 2956.316 kb on + strand, within MPMX20_02798 at 2956.405 kb on + strand, within MPMX20_02798 at 2956.430 kb on - strand, within MPMX20_02798 at 2956.592 kb on - strand, within MPMX20_02798 at 2956.594 kb on + strand, within MPMX20_02798 at 2956.673 kb on + strand, within MPMX20_02798 at 2956.719 kb on + strand, within MPMX20_02798 at 2956.761 kb on - strand, within MPMX20_02798 at 2956.811 kb on - strand, within MPMX20_02798 at 2956.811 kb on - strand, within MPMX20_02798 at 2956.933 kb on + strand, within MPMX20_02798 at 2956.941 kb on - strand, within MPMX20_02798 at 2956.958 kb on + strand, within MPMX20_02798 at 2956.966 kb on - strand, within MPMX20_02798 at 2957.056 kb on + strand, within MPMX20_02798 at 2957.056 kb on + strand, within MPMX20_02798 at 2957.074 kb on - strand, within MPMX20_02798 at 2957.173 kb on + strand at 2957.185 kb on + strand at 2957.193 kb on - strand at 2957.193 kb on - strand at 2957.193 kb on - strand at 2957.193 kb on - strand at 2957.203 kb on - strand at 2957.240 kb on - strand at 2957.240 kb on - strand at 2957.253 kb on + strand at 2957.363 kb on + strand at 2957.373 kb on + strand at 2957.381 kb on - strand at 2957.451 kb on + strand, within MPMX20_02799 at 2957.535 kb on + strand, within MPMX20_02799 at 2957.555 kb on - strand, within MPMX20_02799 at 2957.558 kb on + strand, within MPMX20_02799 at 2957.566 kb on - strand, within MPMX20_02799 at 2957.619 kb on + strand, within MPMX20_02799 at 2957.623 kb on + strand, within MPMX20_02799 at 2957.623 kb on - strand, within MPMX20_02799 at 2957.631 kb on - strand, within MPMX20_02799 at 2957.677 kb on + strand, within MPMX20_02799 at 2957.677 kb on - strand, within MPMX20_02799 at 2957.687 kb on - strand, within MPMX20_02799 at 2957.700 kb on + strand, within MPMX20_02799 at 2957.708 kb on - strand, within MPMX20_02799 at 2957.708 kb on - strand, within MPMX20_02799 at 2957.804 kb on + strand, within MPMX20_02799 at 2957.889 kb on + strand, within MPMX20_02799 at 2957.945 kb on + strand, within MPMX20_02799 at 2957.959 kb on + strand, within MPMX20_02799 at 2958.033 kb on + strand, within MPMX20_02799 at 2958.106 kb on - strand, within MPMX20_02799 at 2958.188 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction TSB plate, Mixed culture; Bacillus pumilus TBS_104 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct remove 2,954,282 + MPMX20_02796 0.78 -0.8 2,954,287 - MPMX20_02796 0.78 -0.1 2,954,298 + MPMX20_02796 0.79 +0.2 2,954,306 - MPMX20_02796 0.80 +1.0 2,954,348 - MPMX20_02796 0.83 -1.1 2,954,589 + +1.3 2,954,589 + +0.9 2,954,589 + -0.7 2,954,589 + +1.4 2,954,597 - -0.3 2,954,597 - -0.1 2,954,597 - -0.8 2,954,597 - +0.3 2,954,633 + -0.1 2,954,653 - -0.4 2,954,735 - -1.8 2,954,758 - +0.6 2,954,796 + -0.1 2,954,799 - -0.7 2,954,809 - MPMX20_02797 0.11 -0.8 2,954,809 - MPMX20_02797 0.11 -1.1 2,954,921 + MPMX20_02797 0.33 -0.3 2,954,930 + MPMX20_02797 0.35 +0.8 2,954,964 + MPMX20_02797 0.42 -0.5 2,955,046 + MPMX20_02797 0.58 -0.7 2,955,046 + MPMX20_02797 0.58 -0.1 2,955,046 + MPMX20_02797 0.58 -0.6 2,955,046 + MPMX20_02797 0.58 +0.2 2,955,051 + MPMX20_02797 0.59 +4.6 2,955,051 + MPMX20_02797 0.59 +0.5 2,955,054 - MPMX20_02797 0.60 +0.2 2,955,054 - MPMX20_02797 0.60 -0.7 2,955,054 - MPMX20_02797 0.60 -0.1 2,955,054 - MPMX20_02797 0.60 -0.4 2,955,054 - MPMX20_02797 0.60 +0.6 2,955,061 + MPMX20_02797 0.61 +0.7 2,955,061 + MPMX20_02797 0.61 -1.2 2,955,061 + MPMX20_02797 0.61 +1.6 2,955,061 + MPMX20_02797 0.61 +2.6 2,955,088 - MPMX20_02797 0.66 -0.0 2,955,116 + MPMX20_02797 0.72 +0.8 2,955,118 + MPMX20_02797 0.72 +0.4 2,955,126 - MPMX20_02797 0.74 -0.0 2,955,172 + MPMX20_02797 0.83 -1.8 2,955,182 + MPMX20_02797 0.85 +2.3 2,955,203 + MPMX20_02797 0.89 +0.2 2,955,264 + +0.7 2,955,271 - +0.6 2,955,283 + -0.3 2,955,283 + -2.9 2,955,344 + +0.8 2,955,357 - -0.7 2,955,368 - -0.1 2,955,368 - -0.4 2,955,368 - +0.3 2,955,424 + -0.8 2,955,427 + +0.2 2,955,427 + +2.1 2,955,432 - +1.1 2,955,435 - +0.0 2,955,581 + MPMX20_02798 0.15 +0.2 2,955,581 + MPMX20_02798 0.15 +0.1 2,955,589 - MPMX20_02798 0.15 +1.1 2,955,623 - MPMX20_02798 0.17 -1.8 2,955,731 + MPMX20_02798 0.22 +0.1 2,955,920 + MPMX20_02798 0.32 +1.3 2,955,963 + MPMX20_02798 0.34 -0.1 2,955,963 + MPMX20_02798 0.34 +1.9 2,955,963 + MPMX20_02798 0.34 -0.1 2,955,963 + MPMX20_02798 0.34 +1.4 2,955,963 + MPMX20_02798 0.34 -0.2 2,955,963 + MPMX20_02798 0.34 -0.1 2,955,963 + MPMX20_02798 0.34 -0.1 2,956,092 + MPMX20_02798 0.40 +0.0 2,956,099 - MPMX20_02798 0.40 -0.1 2,956,157 + MPMX20_02798 0.43 +0.6 2,956,316 + MPMX20_02798 0.51 +1.0 2,956,316 + MPMX20_02798 0.51 +1.3 2,956,405 + MPMX20_02798 0.56 +5.0 2,956,430 - MPMX20_02798 0.57 -0.4 2,956,592 - MPMX20_02798 0.65 -0.7 2,956,594 + MPMX20_02798 0.65 -2.4 2,956,673 + MPMX20_02798 0.69 +3.0 2,956,719 + MPMX20_02798 0.71 -0.4 2,956,761 - MPMX20_02798 0.73 -0.4 2,956,811 - MPMX20_02798 0.75 -1.7 2,956,811 - MPMX20_02798 0.75 -0.0 2,956,933 + MPMX20_02798 0.81 +1.1 2,956,941 - MPMX20_02798 0.82 +2.9 2,956,958 + MPMX20_02798 0.83 -0.7 2,956,966 - MPMX20_02798 0.83 -1.2 2,957,056 + MPMX20_02798 0.88 +0.6 2,957,056 + MPMX20_02798 0.88 -1.6 2,957,074 - MPMX20_02798 0.88 +0.8 2,957,173 + +2.3 2,957,185 + +1.0 2,957,193 - +1.3 2,957,193 - -1.1 2,957,193 - +0.4 2,957,193 - +1.2 2,957,203 - -0.8 2,957,240 - -0.7 2,957,240 - -0.5 2,957,253 + +1.0 2,957,363 + +0.3 2,957,373 + +0.3 2,957,381 - +0.7 2,957,451 + MPMX20_02799 0.15 +1.6 2,957,535 + MPMX20_02799 0.24 +1.2 2,957,555 - MPMX20_02799 0.26 -0.3 2,957,558 + MPMX20_02799 0.26 -0.1 2,957,566 - MPMX20_02799 0.27 +1.3 2,957,619 + MPMX20_02799 0.33 -1.0 2,957,623 + MPMX20_02799 0.33 -0.1 2,957,623 - MPMX20_02799 0.33 -1.3 2,957,631 - MPMX20_02799 0.34 -0.2 2,957,677 + MPMX20_02799 0.39 +1.2 2,957,677 - MPMX20_02799 0.39 +0.3 2,957,687 - MPMX20_02799 0.40 -0.3 2,957,700 + MPMX20_02799 0.42 +0.6 2,957,708 - MPMX20_02799 0.42 -0.6 2,957,708 - MPMX20_02799 0.42 -0.5 2,957,804 + MPMX20_02799 0.53 +0.5 2,957,889 + MPMX20_02799 0.62 +1.1 2,957,945 + MPMX20_02799 0.68 -0.5 2,957,959 + MPMX20_02799 0.69 +0.3 2,958,033 + MPMX20_02799 0.77 -0.1 2,958,106 - MPMX20_02799 0.85 +0.3 2,958,188 + -1.5
Or see this region's nucleotide sequence