Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04282

Experiment: M9 plate, Mixed culture; Bacillus pumilus TBS_104 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_04280 and MPMX20_04281 are separated by 305 nucleotidesMPMX20_04281 and MPMX20_04282 are separated by 3 nucleotidesMPMX20_04282 and MPMX20_04283 overlap by 4 nucleotidesMPMX20_04283 and MPMX20_04284 are separated by 119 nucleotides MPMX20_04280: MPMX20_04280 - Type IV pilus biogenesis and competence protein PilQ, at 4,462,642 to 4,463,880 _04280 MPMX20_04281: MPMX20_04281 - hypothetical protein, at 4,464,186 to 4,464,647 _04281 MPMX20_04282: MPMX20_04282 - hypothetical protein, at 4,464,651 to 4,465,145 _04282 MPMX20_04283: MPMX20_04283 - hypothetical protein, at 4,465,142 to 4,465,918 _04283 MPMX20_04284: MPMX20_04284 - Penicillin-binding protein 1A, at 4,466,038 to 4,468,590 _04284 Position (kb) 4464 4465 4466Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5 6 7 8at 4463.661 kb on - strand, within MPMX20_04280at 4463.721 kb on + strand, within MPMX20_04280at 4463.799 kb on + strandat 4463.862 kb on + strandat 4463.862 kb on + strandat 4463.870 kb on - strandat 4463.870 kb on - strandat 4463.870 kb on - strandat 4463.973 kb on - strandat 4464.119 kb on - strandat 4464.203 kb on + strandat 4464.229 kb on + strandat 4464.229 kb on + strandat 4464.229 kb on + strandat 4464.237 kb on - strand, within MPMX20_04281at 4464.237 kb on - strand, within MPMX20_04281at 4464.237 kb on - strand, within MPMX20_04281at 4464.242 kb on - strand, within MPMX20_04281at 4464.288 kb on + strand, within MPMX20_04281at 4464.353 kb on + strand, within MPMX20_04281at 4464.376 kb on - strand, within MPMX20_04281at 4464.376 kb on - strand, within MPMX20_04281at 4464.376 kb on - strand, within MPMX20_04281at 4464.441 kb on - strand, within MPMX20_04281at 4464.475 kb on + strand, within MPMX20_04281at 4464.483 kb on - strand, within MPMX20_04281at 4464.483 kb on - strand, within MPMX20_04281at 4464.483 kb on - strand, within MPMX20_04281at 4464.483 kb on - strand, within MPMX20_04281at 4464.532 kb on - strand, within MPMX20_04281at 4464.554 kb on + strand, within MPMX20_04281at 4464.554 kb on + strand, within MPMX20_04281at 4464.567 kb on - strand, within MPMX20_04281at 4464.591 kb on + strand, within MPMX20_04281at 4464.594 kb on - strand, within MPMX20_04281at 4464.623 kb on - strandat 4464.649 kb on + strandat 4464.649 kb on + strandat 4464.668 kb on + strandat 4464.676 kb on - strandat 4464.698 kb on - strandat 4464.759 kb on + strand, within MPMX20_04282at 4464.812 kb on - strand, within MPMX20_04282at 4464.812 kb on - strand, within MPMX20_04282at 4464.812 kb on - strand, within MPMX20_04282at 4464.939 kb on - strand, within MPMX20_04282at 4464.951 kb on - strand, within MPMX20_04282at 4464.980 kb on - strand, within MPMX20_04282at 4465.039 kb on + strand, within MPMX20_04282at 4465.158 kb on + strandat 4465.158 kb on + strandat 4465.158 kb on + strandat 4465.158 kb on + strandat 4465.166 kb on - strandat 4465.189 kb on - strandat 4465.189 kb on - strandat 4465.233 kb on + strand, within MPMX20_04283at 4465.268 kb on + strand, within MPMX20_04283at 4465.276 kb on - strand, within MPMX20_04283at 4465.413 kb on + strand, within MPMX20_04283at 4465.413 kb on + strand, within MPMX20_04283at 4465.413 kb on + strand, within MPMX20_04283at 4465.438 kb on + strand, within MPMX20_04283at 4465.446 kb on - strand, within MPMX20_04283at 4465.473 kb on + strand, within MPMX20_04283at 4465.481 kb on - strand, within MPMX20_04283at 4465.516 kb on - strand, within MPMX20_04283at 4465.516 kb on - strand, within MPMX20_04283at 4465.614 kb on + strand, within MPMX20_04283at 4465.713 kb on - strand, within MPMX20_04283at 4465.794 kb on + strand, within MPMX20_04283at 4465.804 kb on + strand, within MPMX20_04283at 4465.858 kb on + strandat 4465.939 kb on - strandat 4465.939 kb on - strandat 4465.947 kb on - strandat 4465.970 kb on + strandat 4465.984 kb on - strandat 4466.035 kb on + strandat 4466.073 kb on + strandat 4466.075 kb on + strandat 4466.081 kb on - strandat 4466.081 kb on - strandat 4466.083 kb on - strandat 4466.085 kb on + strandat 4466.085 kb on + strandat 4466.093 kb on - strandat 4466.093 kb on - strandat 4466.093 kb on - strandat 4466.093 kb on - strandat 4466.093 kb on - strandat 4466.100 kb on + strandat 4466.100 kb on + strandat 4466.103 kb on - strandat 4466.108 kb on - strandat 4466.108 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 plate, Mixed culture; Bacillus pumilus TBS_104 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
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4,463,661 - MPMX20_04280 0.82 +2.3
4,463,721 + MPMX20_04280 0.87 -1.9
4,463,799 + +1.2
4,463,862 + -3.4
4,463,862 + +0.2
4,463,870 - -0.6
4,463,870 - +0.8
4,463,870 - -1.1
4,463,973 - -0.7
4,464,119 - -2.0
4,464,203 + -1.9
4,464,229 + -2.0
4,464,229 + +0.7
4,464,229 + -0.4
4,464,237 - MPMX20_04281 0.11 +0.1
4,464,237 - MPMX20_04281 0.11 +0.8
4,464,237 - MPMX20_04281 0.11 -2.2
4,464,242 - MPMX20_04281 0.12 -1.9
4,464,288 + MPMX20_04281 0.22 +0.7
4,464,353 + MPMX20_04281 0.36 +0.0
4,464,376 - MPMX20_04281 0.41 +0.6
4,464,376 - MPMX20_04281 0.41 -2.7
4,464,376 - MPMX20_04281 0.41 -0.7
4,464,441 - MPMX20_04281 0.55 -4.0
4,464,475 + MPMX20_04281 0.63 -3.8
4,464,483 - MPMX20_04281 0.64 -4.3
4,464,483 - MPMX20_04281 0.64 +0.4
4,464,483 - MPMX20_04281 0.64 +1.6
4,464,483 - MPMX20_04281 0.64 +1.6
4,464,532 - MPMX20_04281 0.75 -1.2
4,464,554 + MPMX20_04281 0.80 -2.6
4,464,554 + MPMX20_04281 0.80 -1.3
4,464,567 - MPMX20_04281 0.82 -3.3
4,464,591 + MPMX20_04281 0.88 +0.8
4,464,594 - MPMX20_04281 0.88 +0.5
4,464,623 - +0.5
4,464,649 + -1.6
4,464,649 + +0.6
4,464,668 + +0.2
4,464,676 - -1.2
4,464,698 - -0.8
4,464,759 + MPMX20_04282 0.22 +8.5
4,464,812 - MPMX20_04282 0.33 -0.6
4,464,812 - MPMX20_04282 0.33 +1.0
4,464,812 - MPMX20_04282 0.33 +5.5
4,464,939 - MPMX20_04282 0.58 +2.6
4,464,951 - MPMX20_04282 0.61 -1.0
4,464,980 - MPMX20_04282 0.66 +0.9
4,465,039 + MPMX20_04282 0.78 -0.3
4,465,158 + -1.0
4,465,158 + -2.2
4,465,158 + +3.5
4,465,158 + -1.3
4,465,166 - -0.9
4,465,189 - -1.4
4,465,189 - -1.6
4,465,233 + MPMX20_04283 0.12 -1.8
4,465,268 + MPMX20_04283 0.16 +0.6
4,465,276 - MPMX20_04283 0.17 -0.4
4,465,413 + MPMX20_04283 0.35 -2.4
4,465,413 + MPMX20_04283 0.35 +0.6
4,465,413 + MPMX20_04283 0.35 +0.9
4,465,438 + MPMX20_04283 0.38 -3.8
4,465,446 - MPMX20_04283 0.39 -1.0
4,465,473 + MPMX20_04283 0.43 +0.1
4,465,481 - MPMX20_04283 0.44 +1.0
4,465,516 - MPMX20_04283 0.48 -0.1
4,465,516 - MPMX20_04283 0.48 -0.9
4,465,614 + MPMX20_04283 0.61 +7.0
4,465,713 - MPMX20_04283 0.73 +1.8
4,465,794 + MPMX20_04283 0.84 -0.0
4,465,804 + MPMX20_04283 0.85 -1.0
4,465,858 + -0.4
4,465,939 - +1.2
4,465,939 - +1.6
4,465,947 - +3.2
4,465,970 + -0.4
4,465,984 - -0.8
4,466,035 + -0.8
4,466,073 + +1.2
4,466,075 + -0.1
4,466,081 - -2.4
4,466,081 - -1.4
4,466,083 - -0.8
4,466,085 + +0.4
4,466,085 + -3.3
4,466,093 - -3.0
4,466,093 - +0.9
4,466,093 - -1.2
4,466,093 - +1.0
4,466,093 - +0.6
4,466,100 + +1.7
4,466,100 + -0.6
4,466,103 - -2.3
4,466,108 - -0.1
4,466,108 - +0.7

Or see this region's nucleotide sequence