Experiment: M9 plate, Mixed culture; Bacillus pumilus TBS_104 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04280 and MPMX20_04281 are separated by 305 nucleotides MPMX20_04281 and MPMX20_04282 are separated by 3 nucleotides MPMX20_04282 and MPMX20_04283 overlap by 4 nucleotides MPMX20_04283 and MPMX20_04284 are separated by 119 nucleotides
MPMX20_04280: MPMX20_04280 - Type IV pilus biogenesis and competence protein PilQ, at 4,462,642 to 4,463,880
_04280
MPMX20_04281: MPMX20_04281 - hypothetical protein, at 4,464,186 to 4,464,647
_04281
MPMX20_04282: MPMX20_04282 - hypothetical protein, at 4,464,651 to 4,465,145
_04282
MPMX20_04283: MPMX20_04283 - hypothetical protein, at 4,465,142 to 4,465,918
_04283
MPMX20_04284: MPMX20_04284 - Penicillin-binding protein 1A, at 4,466,038 to 4,468,590
_04284
Position (kb)
4464
4465
4466 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4
5
6
7
8 at 4463.661 kb on - strand, within MPMX20_04280 at 4463.721 kb on + strand, within MPMX20_04280 at 4463.799 kb on + strand at 4463.862 kb on + strand at 4463.862 kb on + strand at 4463.870 kb on - strand at 4463.870 kb on - strand at 4463.870 kb on - strand at 4463.973 kb on - strand at 4464.119 kb on - strand at 4464.203 kb on + strand at 4464.229 kb on + strand at 4464.229 kb on + strand at 4464.229 kb on + strand at 4464.237 kb on - strand, within MPMX20_04281 at 4464.237 kb on - strand, within MPMX20_04281 at 4464.237 kb on - strand, within MPMX20_04281 at 4464.242 kb on - strand, within MPMX20_04281 at 4464.288 kb on + strand, within MPMX20_04281 at 4464.353 kb on + strand, within MPMX20_04281 at 4464.376 kb on - strand, within MPMX20_04281 at 4464.376 kb on - strand, within MPMX20_04281 at 4464.376 kb on - strand, within MPMX20_04281 at 4464.441 kb on - strand, within MPMX20_04281 at 4464.475 kb on + strand, within MPMX20_04281 at 4464.483 kb on - strand, within MPMX20_04281 at 4464.483 kb on - strand, within MPMX20_04281 at 4464.483 kb on - strand, within MPMX20_04281 at 4464.483 kb on - strand, within MPMX20_04281 at 4464.532 kb on - strand, within MPMX20_04281 at 4464.554 kb on + strand, within MPMX20_04281 at 4464.554 kb on + strand, within MPMX20_04281 at 4464.567 kb on - strand, within MPMX20_04281 at 4464.591 kb on + strand, within MPMX20_04281 at 4464.594 kb on - strand, within MPMX20_04281 at 4464.623 kb on - strand at 4464.649 kb on + strand at 4464.649 kb on + strand at 4464.668 kb on + strand at 4464.676 kb on - strand at 4464.698 kb on - strand at 4464.759 kb on + strand, within MPMX20_04282 at 4464.812 kb on - strand, within MPMX20_04282 at 4464.812 kb on - strand, within MPMX20_04282 at 4464.812 kb on - strand, within MPMX20_04282 at 4464.939 kb on - strand, within MPMX20_04282 at 4464.951 kb on - strand, within MPMX20_04282 at 4464.980 kb on - strand, within MPMX20_04282 at 4465.039 kb on + strand, within MPMX20_04282 at 4465.158 kb on + strand at 4465.158 kb on + strand at 4465.158 kb on + strand at 4465.158 kb on + strand at 4465.166 kb on - strand at 4465.189 kb on - strand at 4465.189 kb on - strand at 4465.233 kb on + strand, within MPMX20_04283 at 4465.268 kb on + strand, within MPMX20_04283 at 4465.276 kb on - strand, within MPMX20_04283 at 4465.413 kb on + strand, within MPMX20_04283 at 4465.413 kb on + strand, within MPMX20_04283 at 4465.413 kb on + strand, within MPMX20_04283 at 4465.438 kb on + strand, within MPMX20_04283 at 4465.446 kb on - strand, within MPMX20_04283 at 4465.473 kb on + strand, within MPMX20_04283 at 4465.481 kb on - strand, within MPMX20_04283 at 4465.516 kb on - strand, within MPMX20_04283 at 4465.516 kb on - strand, within MPMX20_04283 at 4465.614 kb on + strand, within MPMX20_04283 at 4465.713 kb on - strand, within MPMX20_04283 at 4465.794 kb on + strand, within MPMX20_04283 at 4465.804 kb on + strand, within MPMX20_04283 at 4465.858 kb on + strand at 4465.939 kb on - strand at 4465.939 kb on - strand at 4465.947 kb on - strand at 4465.970 kb on + strand at 4465.984 kb on - strand at 4466.035 kb on + strand at 4466.073 kb on + strand at 4466.075 kb on + strand at 4466.081 kb on - strand at 4466.081 kb on - strand at 4466.083 kb on - strand at 4466.085 kb on + strand at 4466.085 kb on + strand at 4466.093 kb on - strand at 4466.093 kb on - strand at 4466.093 kb on - strand at 4466.093 kb on - strand at 4466.093 kb on - strand at 4466.100 kb on + strand at 4466.100 kb on + strand at 4466.103 kb on - strand at 4466.108 kb on - strand at 4466.108 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 plate, Mixed culture; Bacillus pumilus TBS_104 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct remove 4,463,661 - MPMX20_04280 0.82 +2.3 4,463,721 + MPMX20_04280 0.87 -1.9 4,463,799 + +1.2 4,463,862 + -3.4 4,463,862 + +0.2 4,463,870 - -0.6 4,463,870 - +0.8 4,463,870 - -1.1 4,463,973 - -0.7 4,464,119 - -2.0 4,464,203 + -1.9 4,464,229 + -2.0 4,464,229 + +0.7 4,464,229 + -0.4 4,464,237 - MPMX20_04281 0.11 +0.1 4,464,237 - MPMX20_04281 0.11 +0.8 4,464,237 - MPMX20_04281 0.11 -2.2 4,464,242 - MPMX20_04281 0.12 -1.9 4,464,288 + MPMX20_04281 0.22 +0.7 4,464,353 + MPMX20_04281 0.36 +0.0 4,464,376 - MPMX20_04281 0.41 +0.6 4,464,376 - MPMX20_04281 0.41 -2.7 4,464,376 - MPMX20_04281 0.41 -0.7 4,464,441 - MPMX20_04281 0.55 -4.0 4,464,475 + MPMX20_04281 0.63 -3.8 4,464,483 - MPMX20_04281 0.64 -4.3 4,464,483 - MPMX20_04281 0.64 +0.4 4,464,483 - MPMX20_04281 0.64 +1.6 4,464,483 - MPMX20_04281 0.64 +1.6 4,464,532 - MPMX20_04281 0.75 -1.2 4,464,554 + MPMX20_04281 0.80 -2.6 4,464,554 + MPMX20_04281 0.80 -1.3 4,464,567 - MPMX20_04281 0.82 -3.3 4,464,591 + MPMX20_04281 0.88 +0.8 4,464,594 - MPMX20_04281 0.88 +0.5 4,464,623 - +0.5 4,464,649 + -1.6 4,464,649 + +0.6 4,464,668 + +0.2 4,464,676 - -1.2 4,464,698 - -0.8 4,464,759 + MPMX20_04282 0.22 +8.5 4,464,812 - MPMX20_04282 0.33 -0.6 4,464,812 - MPMX20_04282 0.33 +1.0 4,464,812 - MPMX20_04282 0.33 +5.5 4,464,939 - MPMX20_04282 0.58 +2.6 4,464,951 - MPMX20_04282 0.61 -1.0 4,464,980 - MPMX20_04282 0.66 +0.9 4,465,039 + MPMX20_04282 0.78 -0.3 4,465,158 + -1.0 4,465,158 + -2.2 4,465,158 + +3.5 4,465,158 + -1.3 4,465,166 - -0.9 4,465,189 - -1.4 4,465,189 - -1.6 4,465,233 + MPMX20_04283 0.12 -1.8 4,465,268 + MPMX20_04283 0.16 +0.6 4,465,276 - MPMX20_04283 0.17 -0.4 4,465,413 + MPMX20_04283 0.35 -2.4 4,465,413 + MPMX20_04283 0.35 +0.6 4,465,413 + MPMX20_04283 0.35 +0.9 4,465,438 + MPMX20_04283 0.38 -3.8 4,465,446 - MPMX20_04283 0.39 -1.0 4,465,473 + MPMX20_04283 0.43 +0.1 4,465,481 - MPMX20_04283 0.44 +1.0 4,465,516 - MPMX20_04283 0.48 -0.1 4,465,516 - MPMX20_04283 0.48 -0.9 4,465,614 + MPMX20_04283 0.61 +7.0 4,465,713 - MPMX20_04283 0.73 +1.8 4,465,794 + MPMX20_04283 0.84 -0.0 4,465,804 + MPMX20_04283 0.85 -1.0 4,465,858 + -0.4 4,465,939 - +1.2 4,465,939 - +1.6 4,465,947 - +3.2 4,465,970 + -0.4 4,465,984 - -0.8 4,466,035 + -0.8 4,466,073 + +1.2 4,466,075 + -0.1 4,466,081 - -2.4 4,466,081 - -1.4 4,466,083 - -0.8 4,466,085 + +0.4 4,466,085 + -3.3 4,466,093 - -3.0 4,466,093 - +0.9 4,466,093 - -1.2 4,466,093 - +1.0 4,466,093 - +0.6 4,466,100 + +1.7 4,466,100 + -0.6 4,466,103 - -2.3 4,466,108 - -0.1 4,466,108 - +0.7
Or see this region's nucleotide sequence