Experiment: M9 plate, Mixed culture; Bacillus pumilus TBS_104 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03801 and MPMX20_03802 are separated by 58 nucleotides MPMX20_03802 and MPMX20_03803 are separated by 94 nucleotides MPMX20_03803 and MPMX20_03804 are separated by 52 nucleotides MPMX20_03804 and MPMX20_03805 are separated by 39 nucleotides
MPMX20_03801: MPMX20_03801 - Galactose-proton symporter, at 4,007,902 to 4,009,299
_03801
MPMX20_03802: MPMX20_03802 - Protein SprT, at 4,009,358 to 4,009,855
_03802
MPMX20_03803: MPMX20_03803 - Endonuclease-1, at 4,009,950 to 4,010,657
_03803
MPMX20_03804: MPMX20_03804 - Ribosomal RNA small subunit methyltransferase E, at 4,010,710 to 4,011,441
_03804
MPMX20_03805: MPMX20_03805 - Glutathione synthetase, at 4,011,481 to 4,012,428
_03805
Position (kb)
4009
4010
4011 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 4008.956 kb on - strand, within MPMX20_03801 at 4008.956 kb on - strand, within MPMX20_03801 at 4008.956 kb on - strand, within MPMX20_03801 at 4008.962 kb on + strand, within MPMX20_03801 at 4008.977 kb on - strand, within MPMX20_03801 at 4009.013 kb on + strand, within MPMX20_03801 at 4009.065 kb on + strand, within MPMX20_03801 at 4009.070 kb on + strand, within MPMX20_03801 at 4009.073 kb on - strand, within MPMX20_03801 at 4009.078 kb on - strand, within MPMX20_03801 at 4009.136 kb on - strand, within MPMX20_03801 at 4009.154 kb on + strand, within MPMX20_03801 at 4009.162 kb on - strand at 4009.162 kb on - strand at 4009.166 kb on + strand at 4009.166 kb on + strand at 4009.200 kb on - strand at 4009.286 kb on + strand at 4009.323 kb on + strand at 4009.326 kb on - strand at 4009.334 kb on - strand at 4009.424 kb on + strand, within MPMX20_03802 at 4009.435 kb on + strand, within MPMX20_03802 at 4009.450 kb on + strand, within MPMX20_03802 at 4009.450 kb on + strand, within MPMX20_03802 at 4009.458 kb on - strand, within MPMX20_03802 at 4009.458 kb on - strand, within MPMX20_03802 at 4009.458 kb on - strand, within MPMX20_03802 at 4009.458 kb on - strand, within MPMX20_03802 at 4009.458 kb on - strand, within MPMX20_03802 at 4009.458 kb on - strand, within MPMX20_03802 at 4009.458 kb on - strand, within MPMX20_03802 at 4009.458 kb on - strand, within MPMX20_03802 at 4009.458 kb on - strand, within MPMX20_03802 at 4009.538 kb on - strand, within MPMX20_03802 at 4009.588 kb on + strand, within MPMX20_03802 at 4009.619 kb on + strand, within MPMX20_03802 at 4009.681 kb on - strand, within MPMX20_03802 at 4009.733 kb on + strand, within MPMX20_03802 at 4009.734 kb on - strand, within MPMX20_03802 at 4009.762 kb on + strand, within MPMX20_03802 at 4009.830 kb on + strand at 4009.943 kb on + strand at 4009.943 kb on + strand at 4009.995 kb on + strand at 4010.014 kb on - strand at 4010.015 kb on - strand at 4010.020 kb on + strand at 4010.061 kb on - strand, within MPMX20_03803 at 4010.073 kb on - strand, within MPMX20_03803 at 4010.149 kb on + strand, within MPMX20_03803 at 4010.149 kb on + strand, within MPMX20_03803 at 4010.149 kb on + strand, within MPMX20_03803 at 4010.149 kb on + strand, within MPMX20_03803 at 4010.149 kb on + strand, within MPMX20_03803 at 4010.149 kb on + strand, within MPMX20_03803 at 4010.157 kb on - strand, within MPMX20_03803 at 4010.157 kb on - strand, within MPMX20_03803 at 4010.157 kb on - strand, within MPMX20_03803 at 4010.157 kb on - strand, within MPMX20_03803 at 4010.157 kb on - strand, within MPMX20_03803 at 4010.157 kb on - strand, within MPMX20_03803 at 4010.203 kb on - strand, within MPMX20_03803 at 4010.341 kb on - strand, within MPMX20_03803 at 4010.494 kb on + strand, within MPMX20_03803 at 4010.500 kb on + strand, within MPMX20_03803 at 4010.501 kb on + strand, within MPMX20_03803 at 4010.531 kb on + strand, within MPMX20_03803 at 4010.531 kb on + strand, within MPMX20_03803 at 4010.531 kb on + strand, within MPMX20_03803 at 4010.606 kb on + strand at 4010.610 kb on + strand at 4010.612 kb on + strand at 4010.618 kb on + strand at 4010.656 kb on + strand at 4010.664 kb on - strand at 4010.727 kb on + strand at 4010.732 kb on + strand at 4010.735 kb on - strand at 4010.740 kb on - strand at 4010.740 kb on - strand at 4010.740 kb on - strand at 4010.740 kb on - strand at 4010.767 kb on - strand at 4010.767 kb on - strand at 4010.824 kb on + strand, within MPMX20_03804 at 4010.851 kb on - strand, within MPMX20_03804 at 4010.945 kb on + strand, within MPMX20_03804 at 4010.960 kb on + strand, within MPMX20_03804 at 4011.015 kb on + strand, within MPMX20_03804 at 4011.017 kb on + strand, within MPMX20_03804 at 4011.122 kb on + strand, within MPMX20_03804 at 4011.130 kb on - strand, within MPMX20_03804 at 4011.135 kb on - strand, within MPMX20_03804 at 4011.218 kb on + strand, within MPMX20_03804 at 4011.221 kb on - strand, within MPMX20_03804 at 4011.221 kb on - strand, within MPMX20_03804 at 4011.442 kb on + strand at 4011.450 kb on - strand at 4011.450 kb on - strand at 4011.489 kb on + strand at 4011.499 kb on + strand at 4011.519 kb on + strand at 4011.527 kb on - strand at 4011.527 kb on - strand at 4011.555 kb on + strand at 4011.563 kb on - strand at 4011.563 kb on - strand at 4011.575 kb on + strand at 4011.590 kb on + strand, within MPMX20_03805 at 4011.590 kb on + strand, within MPMX20_03805 at 4011.590 kb on + strand, within MPMX20_03805 at 4011.613 kb on - strand, within MPMX20_03805 at 4011.613 kb on - strand, within MPMX20_03805
Per-strain Table
Position Strand Gene LocusTag Fraction M9 plate, Mixed culture; Bacillus pumilus TBS_104 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct remove 4,008,956 - MPMX20_03801 0.75 -2.6 4,008,956 - MPMX20_03801 0.75 -0.0 4,008,956 - MPMX20_03801 0.75 +0.0 4,008,962 + MPMX20_03801 0.76 +0.1 4,008,977 - MPMX20_03801 0.77 -0.9 4,009,013 + MPMX20_03801 0.79 -0.6 4,009,065 + MPMX20_03801 0.83 +0.8 4,009,070 + MPMX20_03801 0.84 +0.8 4,009,073 - MPMX20_03801 0.84 -2.5 4,009,078 - MPMX20_03801 0.84 +1.0 4,009,136 - MPMX20_03801 0.88 +0.5 4,009,154 + MPMX20_03801 0.90 +1.5 4,009,162 - -0.2 4,009,162 - +0.1 4,009,166 + +0.6 4,009,166 + -1.3 4,009,200 - -0.6 4,009,286 + +3.4 4,009,323 + -0.5 4,009,326 - -1.7 4,009,334 - +0.5 4,009,424 + MPMX20_03802 0.13 -1.3 4,009,435 + MPMX20_03802 0.15 -3.2 4,009,450 + MPMX20_03802 0.18 +1.0 4,009,450 + MPMX20_03802 0.18 -1.5 4,009,458 - MPMX20_03802 0.20 +1.3 4,009,458 - MPMX20_03802 0.20 -3.0 4,009,458 - MPMX20_03802 0.20 -1.9 4,009,458 - MPMX20_03802 0.20 +1.5 4,009,458 - MPMX20_03802 0.20 -2.0 4,009,458 - MPMX20_03802 0.20 -1.4 4,009,458 - MPMX20_03802 0.20 +1.9 4,009,458 - MPMX20_03802 0.20 +3.7 4,009,458 - MPMX20_03802 0.20 -0.5 4,009,538 - MPMX20_03802 0.36 -2.0 4,009,588 + MPMX20_03802 0.46 +0.7 4,009,619 + MPMX20_03802 0.52 +0.4 4,009,681 - MPMX20_03802 0.65 -1.7 4,009,733 + MPMX20_03802 0.75 -0.3 4,009,734 - MPMX20_03802 0.76 +0.5 4,009,762 + MPMX20_03802 0.81 +1.0 4,009,830 + -1.9 4,009,943 + +0.5 4,009,943 + -1.9 4,009,995 + -1.2 4,010,014 - +0.5 4,010,015 - +0.8 4,010,020 + +0.9 4,010,061 - MPMX20_03803 0.16 -1.9 4,010,073 - MPMX20_03803 0.17 -3.4 4,010,149 + MPMX20_03803 0.28 -0.0 4,010,149 + MPMX20_03803 0.28 +1.9 4,010,149 + MPMX20_03803 0.28 +1.5 4,010,149 + MPMX20_03803 0.28 -0.9 4,010,149 + MPMX20_03803 0.28 -2.2 4,010,149 + MPMX20_03803 0.28 -1.9 4,010,157 - MPMX20_03803 0.29 +0.5 4,010,157 - MPMX20_03803 0.29 -1.1 4,010,157 - MPMX20_03803 0.29 -0.5 4,010,157 - MPMX20_03803 0.29 -1.3 4,010,157 - MPMX20_03803 0.29 +0.7 4,010,157 - MPMX20_03803 0.29 -0.4 4,010,203 - MPMX20_03803 0.36 -4.3 4,010,341 - MPMX20_03803 0.55 -2.7 4,010,494 + MPMX20_03803 0.77 +1.0 4,010,500 + MPMX20_03803 0.78 -0.2 4,010,501 + MPMX20_03803 0.78 -2.8 4,010,531 + MPMX20_03803 0.82 +0.1 4,010,531 + MPMX20_03803 0.82 -0.0 4,010,531 + MPMX20_03803 0.82 -0.5 4,010,606 + -0.8 4,010,610 + -1.5 4,010,612 + -4.0 4,010,618 + -2.1 4,010,656 + +0.9 4,010,664 - +0.0 4,010,727 + -1.3 4,010,732 + -0.8 4,010,735 - -0.1 4,010,740 - +0.7 4,010,740 - -3.2 4,010,740 - -0.1 4,010,740 - +0.6 4,010,767 - -2.7 4,010,767 - -0.1 4,010,824 + MPMX20_03804 0.16 -1.5 4,010,851 - MPMX20_03804 0.19 -1.8 4,010,945 + MPMX20_03804 0.32 +2.0 4,010,960 + MPMX20_03804 0.34 +0.9 4,011,015 + MPMX20_03804 0.42 +1.9 4,011,017 + MPMX20_03804 0.42 +0.0 4,011,122 + MPMX20_03804 0.56 -4.0 4,011,130 - MPMX20_03804 0.57 +1.2 4,011,135 - MPMX20_03804 0.58 -0.1 4,011,218 + MPMX20_03804 0.69 +0.2 4,011,221 - MPMX20_03804 0.70 -2.5 4,011,221 - MPMX20_03804 0.70 -0.7 4,011,442 + +0.1 4,011,450 - -2.9 4,011,450 - +1.1 4,011,489 + -0.1 4,011,499 + +1.9 4,011,519 + -2.4 4,011,527 - -0.0 4,011,527 - +0.8 4,011,555 + +0.5 4,011,563 - -0.8 4,011,563 - -0.8 4,011,575 + -1.0 4,011,590 + MPMX20_03805 0.11 -2.9 4,011,590 + MPMX20_03805 0.11 -0.5 4,011,590 + MPMX20_03805 0.11 -4.0 4,011,613 - MPMX20_03805 0.14 -0.1 4,011,613 - MPMX20_03805 0.14 +1.9
Or see this region's nucleotide sequence