Experiment: M9 plate, Mixed culture; Bacillus pumilus TBS_104 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02793 and MPMX20_02794 are separated by 16 nucleotides MPMX20_02794 and MPMX20_02795 are separated by 12 nucleotides MPMX20_02795 and MPMX20_02796 are separated by 430 nucleotides
MPMX20_02793: MPMX20_02793 - hypothetical protein, at 2,950,962 to 2,951,723
_02793
MPMX20_02794: MPMX20_02794 - hypothetical protein, at 2,951,740 to 2,952,288
_02794
MPMX20_02795: MPMX20_02795 - hypothetical protein, at 2,952,301 to 2,952,873
_02795
MPMX20_02796: MPMX20_02796 - C4-dicarboxylate transport protein, at 2,953,304 to 2,954,563
_02796
Position (kb)
2952
2953 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 2951.323 kb on + strand, within MPMX20_02793 at 2951.395 kb on - strand, within MPMX20_02793 at 2951.402 kb on + strand, within MPMX20_02793 at 2951.402 kb on + strand, within MPMX20_02793 at 2951.404 kb on + strand, within MPMX20_02793 at 2951.404 kb on + strand, within MPMX20_02793 at 2951.404 kb on + strand, within MPMX20_02793 at 2951.443 kb on - strand, within MPMX20_02793 at 2951.487 kb on - strand, within MPMX20_02793 at 2951.533 kb on + strand, within MPMX20_02793 at 2951.541 kb on - strand, within MPMX20_02793 at 2951.628 kb on + strand, within MPMX20_02793 at 2951.695 kb on + strand at 2951.703 kb on - strand at 2951.760 kb on - strand at 2951.766 kb on + strand at 2951.774 kb on - strand at 2951.787 kb on + strand at 2951.787 kb on + strand at 2951.795 kb on - strand, within MPMX20_02794 at 2951.834 kb on - strand, within MPMX20_02794 at 2951.859 kb on - strand, within MPMX20_02794 at 2951.909 kb on + strand, within MPMX20_02794 at 2951.969 kb on + strand, within MPMX20_02794 at 2951.969 kb on + strand, within MPMX20_02794 at 2952.001 kb on - strand, within MPMX20_02794 at 2952.026 kb on + strand, within MPMX20_02794 at 2952.079 kb on - strand, within MPMX20_02794 at 2952.142 kb on + strand, within MPMX20_02794 at 2952.217 kb on + strand, within MPMX20_02794 at 2952.249 kb on + strand at 2952.283 kb on + strand at 2952.291 kb on - strand at 2952.291 kb on - strand at 2952.314 kb on - strand at 2952.359 kb on - strand, within MPMX20_02795 at 2952.390 kb on + strand, within MPMX20_02795 at 2952.392 kb on + strand, within MPMX20_02795 at 2952.482 kb on + strand, within MPMX20_02795 at 2952.488 kb on + strand, within MPMX20_02795 at 2952.496 kb on - strand, within MPMX20_02795 at 2952.511 kb on - strand, within MPMX20_02795 at 2952.524 kb on - strand, within MPMX20_02795 at 2952.536 kb on - strand, within MPMX20_02795 at 2952.545 kb on - strand, within MPMX20_02795 at 2952.605 kb on - strand, within MPMX20_02795 at 2952.652 kb on + strand, within MPMX20_02795 at 2952.652 kb on + strand, within MPMX20_02795 at 2952.692 kb on - strand, within MPMX20_02795 at 2952.707 kb on + strand, within MPMX20_02795 at 2952.734 kb on + strand, within MPMX20_02795 at 2952.766 kb on + strand, within MPMX20_02795 at 2952.819 kb on - strand at 2952.821 kb on - strand at 2952.827 kb on + strand at 2952.840 kb on + strand at 2952.840 kb on + strand at 2952.892 kb on - strand at 2953.017 kb on + strand at 2953.017 kb on + strand at 2953.017 kb on + strand at 2953.025 kb on - strand at 2953.025 kb on - strand at 2953.025 kb on - strand at 2953.025 kb on - strand at 2953.106 kb on + strand at 2953.107 kb on + strand at 2953.114 kb on - strand at 2953.270 kb on + strand at 2953.311 kb on + strand at 2953.319 kb on - strand at 2953.389 kb on + strand at 2953.410 kb on - strand at 2953.488 kb on - strand, within MPMX20_02796 at 2953.493 kb on - strand, within MPMX20_02796 at 2953.514 kb on - strand, within MPMX20_02796 at 2953.674 kb on + strand, within MPMX20_02796 at 2953.674 kb on + strand, within MPMX20_02796 at 2953.845 kb on + strand, within MPMX20_02796
Per-strain Table
Position Strand Gene LocusTag Fraction M9 plate, Mixed culture; Bacillus pumilus TBS_104 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct remove 2,951,323 + MPMX20_02793 0.47 +0.6 2,951,395 - MPMX20_02793 0.57 -0.1 2,951,402 + MPMX20_02793 0.58 -1.4 2,951,402 + MPMX20_02793 0.58 -1.7 2,951,404 + MPMX20_02793 0.58 -1.2 2,951,404 + MPMX20_02793 0.58 +1.0 2,951,404 + MPMX20_02793 0.58 +0.3 2,951,443 - MPMX20_02793 0.63 -0.2 2,951,487 - MPMX20_02793 0.69 +0.3 2,951,533 + MPMX20_02793 0.75 -2.5 2,951,541 - MPMX20_02793 0.76 -1.0 2,951,628 + MPMX20_02793 0.87 +1.8 2,951,695 + -0.6 2,951,703 - -1.1 2,951,760 - -0.7 2,951,766 + -0.4 2,951,774 - -0.7 2,951,787 + -3.6 2,951,787 + -0.2 2,951,795 - MPMX20_02794 0.10 -0.3 2,951,834 - MPMX20_02794 0.17 -3.9 2,951,859 - MPMX20_02794 0.22 -1.9 2,951,909 + MPMX20_02794 0.31 -0.4 2,951,969 + MPMX20_02794 0.42 -1.1 2,951,969 + MPMX20_02794 0.42 +2.3 2,952,001 - MPMX20_02794 0.48 -0.5 2,952,026 + MPMX20_02794 0.52 -2.0 2,952,079 - MPMX20_02794 0.62 -0.4 2,952,142 + MPMX20_02794 0.73 -2.0 2,952,217 + MPMX20_02794 0.87 +0.3 2,952,249 + +0.3 2,952,283 + +0.1 2,952,291 - -0.9 2,952,291 - +0.9 2,952,314 - +1.1 2,952,359 - MPMX20_02795 0.10 +0.2 2,952,390 + MPMX20_02795 0.16 +0.8 2,952,392 + MPMX20_02795 0.16 -0.0 2,952,482 + MPMX20_02795 0.32 +1.6 2,952,488 + MPMX20_02795 0.33 -1.4 2,952,496 - MPMX20_02795 0.34 +1.8 2,952,511 - MPMX20_02795 0.37 +0.9 2,952,524 - MPMX20_02795 0.39 +2.6 2,952,536 - MPMX20_02795 0.41 +1.0 2,952,545 - MPMX20_02795 0.43 -0.4 2,952,605 - MPMX20_02795 0.53 +1.6 2,952,652 + MPMX20_02795 0.61 -1.2 2,952,652 + MPMX20_02795 0.61 +1.8 2,952,692 - MPMX20_02795 0.68 +1.2 2,952,707 + MPMX20_02795 0.71 -3.3 2,952,734 + MPMX20_02795 0.76 +2.9 2,952,766 + MPMX20_02795 0.81 +1.1 2,952,819 - +0.3 2,952,821 - -0.1 2,952,827 + -0.0 2,952,840 + +0.3 2,952,840 + -1.2 2,952,892 - +2.9 2,953,017 + +1.6 2,953,017 + +2.0 2,953,017 + -0.4 2,953,025 - -1.4 2,953,025 - +0.4 2,953,025 - +0.6 2,953,025 - -0.7 2,953,106 + -2.5 2,953,107 + -1.2 2,953,114 - -0.7 2,953,270 + +1.0 2,953,311 + +1.2 2,953,319 - -1.6 2,953,389 + +0.4 2,953,410 - +1.6 2,953,488 - MPMX20_02796 0.15 -1.9 2,953,493 - MPMX20_02796 0.15 +0.0 2,953,514 - MPMX20_02796 0.17 -1.3 2,953,674 + MPMX20_02796 0.29 -1.0 2,953,674 + MPMX20_02796 0.29 +0.3 2,953,845 + MPMX20_02796 0.43 -2.8
Or see this region's nucleotide sequence