Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01764

Experiment: M9 plate, Mixed culture; Bacillus pumilus TBS_104 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01763 and MPMX20_01764 are separated by 106 nucleotidesMPMX20_01764 and MPMX20_01765 are separated by 40 nucleotides MPMX20_01763: MPMX20_01763 - sugar efflux transporter, at 1,854,318 to 1,855,532 _01763 MPMX20_01764: MPMX20_01764 - HTH-type transcriptional regulator DmlR, at 1,855,639 to 1,856,577 _01764 MPMX20_01765: MPMX20_01765 - Ribonuclease E, at 1,856,618 to 1,859,743 _01765 Position (kb) 1855 1856 1857Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 1854.669 kb on + strand, within MPMX20_01763at 1854.669 kb on + strand, within MPMX20_01763at 1854.679 kb on + strand, within MPMX20_01763at 1854.687 kb on - strand, within MPMX20_01763at 1854.767 kb on + strand, within MPMX20_01763at 1854.792 kb on + strand, within MPMX20_01763at 1854.792 kb on + strand, within MPMX20_01763at 1854.813 kb on - strand, within MPMX20_01763at 1854.827 kb on + strand, within MPMX20_01763at 1854.835 kb on - strand, within MPMX20_01763at 1854.922 kb on + strand, within MPMX20_01763at 1854.927 kb on + strand, within MPMX20_01763at 1854.932 kb on + strand, within MPMX20_01763at 1854.932 kb on + strand, within MPMX20_01763at 1854.935 kb on - strand, within MPMX20_01763at 1854.937 kb on + strand, within MPMX20_01763at 1854.950 kb on - strand, within MPMX20_01763at 1854.950 kb on - strand, within MPMX20_01763at 1855.008 kb on + strand, within MPMX20_01763at 1855.030 kb on - strand, within MPMX20_01763at 1855.056 kb on - strand, within MPMX20_01763at 1855.095 kb on + strand, within MPMX20_01763at 1855.244 kb on + strand, within MPMX20_01763at 1855.273 kb on - strand, within MPMX20_01763at 1855.369 kb on + strand, within MPMX20_01763at 1855.451 kb on + strandat 1855.519 kb on + strandat 1855.546 kb on + strandat 1855.554 kb on - strandat 1855.588 kb on + strandat 1855.593 kb on + strandat 1855.596 kb on - strandat 1855.675 kb on - strandat 1855.685 kb on + strandat 1855.732 kb on - strandat 1855.744 kb on + strand, within MPMX20_01764at 1855.884 kb on - strand, within MPMX20_01764at 1855.914 kb on + strand, within MPMX20_01764at 1855.961 kb on + strand, within MPMX20_01764at 1855.969 kb on - strand, within MPMX20_01764at 1856.007 kb on + strand, within MPMX20_01764at 1856.015 kb on - strand, within MPMX20_01764at 1856.076 kb on + strand, within MPMX20_01764at 1856.120 kb on + strand, within MPMX20_01764at 1856.138 kb on - strand, within MPMX20_01764at 1856.140 kb on + strand, within MPMX20_01764at 1856.148 kb on - strand, within MPMX20_01764at 1856.148 kb on - strand, within MPMX20_01764at 1856.150 kb on + strand, within MPMX20_01764at 1856.150 kb on + strand, within MPMX20_01764at 1856.162 kb on + strand, within MPMX20_01764at 1856.240 kb on + strand, within MPMX20_01764at 1856.305 kb on - strand, within MPMX20_01764at 1856.356 kb on + strand, within MPMX20_01764at 1856.364 kb on - strand, within MPMX20_01764at 1856.365 kb on - strand, within MPMX20_01764at 1856.720 kb on - strandat 1856.819 kb on - strandat 1857.042 kb on + strand, within MPMX20_01765at 1857.120 kb on - strand, within MPMX20_01765at 1857.244 kb on - strand, within MPMX20_01765at 1857.314 kb on - strand, within MPMX20_01765at 1857.406 kb on - strand, within MPMX20_01765at 1857.419 kb on + strand, within MPMX20_01765

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 plate, Mixed culture; Bacillus pumilus TBS_104 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
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1,854,669 + MPMX20_01763 0.29 +1.1
1,854,669 + MPMX20_01763 0.29 -1.8
1,854,679 + MPMX20_01763 0.30 +1.9
1,854,687 - MPMX20_01763 0.30 +0.2
1,854,767 + MPMX20_01763 0.37 -0.2
1,854,792 + MPMX20_01763 0.39 -3.8
1,854,792 + MPMX20_01763 0.39 +0.2
1,854,813 - MPMX20_01763 0.41 +0.8
1,854,827 + MPMX20_01763 0.42 -3.0
1,854,835 - MPMX20_01763 0.43 -0.8
1,854,922 + MPMX20_01763 0.50 -0.0
1,854,927 + MPMX20_01763 0.50 -2.5
1,854,932 + MPMX20_01763 0.51 -1.7
1,854,932 + MPMX20_01763 0.51 -0.9
1,854,935 - MPMX20_01763 0.51 -3.6
1,854,937 + MPMX20_01763 0.51 +0.2
1,854,950 - MPMX20_01763 0.52 +0.6
1,854,950 - MPMX20_01763 0.52 +1.0
1,855,008 + MPMX20_01763 0.57 -0.6
1,855,030 - MPMX20_01763 0.59 +0.6
1,855,056 - MPMX20_01763 0.61 +0.8
1,855,095 + MPMX20_01763 0.64 +0.3
1,855,244 + MPMX20_01763 0.76 -2.4
1,855,273 - MPMX20_01763 0.79 +4.2
1,855,369 + MPMX20_01763 0.87 +0.2
1,855,451 + -2.9
1,855,519 + +1.0
1,855,546 + -0.3
1,855,554 - +1.0
1,855,588 + -0.0
1,855,593 + -0.1
1,855,596 - +1.0
1,855,675 - +0.5
1,855,685 + -3.1
1,855,732 - -0.3
1,855,744 + MPMX20_01764 0.11 -0.2
1,855,884 - MPMX20_01764 0.26 +0.8
1,855,914 + MPMX20_01764 0.29 -0.9
1,855,961 + MPMX20_01764 0.34 -2.0
1,855,969 - MPMX20_01764 0.35 -0.1
1,856,007 + MPMX20_01764 0.39 +0.8
1,856,015 - MPMX20_01764 0.40 -0.2
1,856,076 + MPMX20_01764 0.47 -1.4
1,856,120 + MPMX20_01764 0.51 -3.0
1,856,138 - MPMX20_01764 0.53 -1.8
1,856,140 + MPMX20_01764 0.53 +0.2
1,856,148 - MPMX20_01764 0.54 -0.6
1,856,148 - MPMX20_01764 0.54 -0.3
1,856,150 + MPMX20_01764 0.54 -0.2
1,856,150 + MPMX20_01764 0.54 -0.8
1,856,162 + MPMX20_01764 0.56 -1.9
1,856,240 + MPMX20_01764 0.64 +0.4
1,856,305 - MPMX20_01764 0.71 +0.5
1,856,356 + MPMX20_01764 0.76 -0.7
1,856,364 - MPMX20_01764 0.77 -2.5
1,856,365 - MPMX20_01764 0.77 -2.7
1,856,720 - -3.0
1,856,819 - -2.6
1,857,042 + MPMX20_01765 0.14 -0.5
1,857,120 - MPMX20_01765 0.16 -2.3
1,857,244 - MPMX20_01765 0.20 -2.5
1,857,314 - MPMX20_01765 0.22 -1.2
1,857,406 - MPMX20_01765 0.25 -0.6
1,857,419 + MPMX20_01765 0.26 -1.4

Or see this region's nucleotide sequence