Experiment: M9 plate, Mixed culture; Bacillus pumilus TBS_104 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01763 and MPMX20_01764 are separated by 106 nucleotides MPMX20_01764 and MPMX20_01765 are separated by 40 nucleotides
MPMX20_01763: MPMX20_01763 - sugar efflux transporter, at 1,854,318 to 1,855,532
_01763
MPMX20_01764: MPMX20_01764 - HTH-type transcriptional regulator DmlR, at 1,855,639 to 1,856,577
_01764
MPMX20_01765: MPMX20_01765 - Ribonuclease E, at 1,856,618 to 1,859,743
_01765
Position (kb)
1855
1856
1857 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 1854.669 kb on + strand, within MPMX20_01763 at 1854.669 kb on + strand, within MPMX20_01763 at 1854.679 kb on + strand, within MPMX20_01763 at 1854.687 kb on - strand, within MPMX20_01763 at 1854.767 kb on + strand, within MPMX20_01763 at 1854.792 kb on + strand, within MPMX20_01763 at 1854.792 kb on + strand, within MPMX20_01763 at 1854.813 kb on - strand, within MPMX20_01763 at 1854.827 kb on + strand, within MPMX20_01763 at 1854.835 kb on - strand, within MPMX20_01763 at 1854.922 kb on + strand, within MPMX20_01763 at 1854.927 kb on + strand, within MPMX20_01763 at 1854.932 kb on + strand, within MPMX20_01763 at 1854.932 kb on + strand, within MPMX20_01763 at 1854.935 kb on - strand, within MPMX20_01763 at 1854.937 kb on + strand, within MPMX20_01763 at 1854.950 kb on - strand, within MPMX20_01763 at 1854.950 kb on - strand, within MPMX20_01763 at 1855.008 kb on + strand, within MPMX20_01763 at 1855.030 kb on - strand, within MPMX20_01763 at 1855.056 kb on - strand, within MPMX20_01763 at 1855.095 kb on + strand, within MPMX20_01763 at 1855.244 kb on + strand, within MPMX20_01763 at 1855.273 kb on - strand, within MPMX20_01763 at 1855.369 kb on + strand, within MPMX20_01763 at 1855.451 kb on + strand at 1855.519 kb on + strand at 1855.546 kb on + strand at 1855.554 kb on - strand at 1855.588 kb on + strand at 1855.593 kb on + strand at 1855.596 kb on - strand at 1855.675 kb on - strand at 1855.685 kb on + strand at 1855.732 kb on - strand at 1855.744 kb on + strand, within MPMX20_01764 at 1855.884 kb on - strand, within MPMX20_01764 at 1855.914 kb on + strand, within MPMX20_01764 at 1855.961 kb on + strand, within MPMX20_01764 at 1855.969 kb on - strand, within MPMX20_01764 at 1856.007 kb on + strand, within MPMX20_01764 at 1856.015 kb on - strand, within MPMX20_01764 at 1856.076 kb on + strand, within MPMX20_01764 at 1856.120 kb on + strand, within MPMX20_01764 at 1856.138 kb on - strand, within MPMX20_01764 at 1856.140 kb on + strand, within MPMX20_01764 at 1856.148 kb on - strand, within MPMX20_01764 at 1856.148 kb on - strand, within MPMX20_01764 at 1856.150 kb on + strand, within MPMX20_01764 at 1856.150 kb on + strand, within MPMX20_01764 at 1856.162 kb on + strand, within MPMX20_01764 at 1856.240 kb on + strand, within MPMX20_01764 at 1856.305 kb on - strand, within MPMX20_01764 at 1856.356 kb on + strand, within MPMX20_01764 at 1856.364 kb on - strand, within MPMX20_01764 at 1856.365 kb on - strand, within MPMX20_01764 at 1856.720 kb on - strand at 1856.819 kb on - strand at 1857.042 kb on + strand, within MPMX20_01765 at 1857.120 kb on - strand, within MPMX20_01765 at 1857.244 kb on - strand, within MPMX20_01765 at 1857.314 kb on - strand, within MPMX20_01765 at 1857.406 kb on - strand, within MPMX20_01765 at 1857.419 kb on + strand, within MPMX20_01765
Per-strain Table
Position Strand Gene LocusTag Fraction M9 plate, Mixed culture; Bacillus pumilus TBS_104 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct remove 1,854,669 + MPMX20_01763 0.29 +1.1 1,854,669 + MPMX20_01763 0.29 -1.8 1,854,679 + MPMX20_01763 0.30 +1.9 1,854,687 - MPMX20_01763 0.30 +0.2 1,854,767 + MPMX20_01763 0.37 -0.2 1,854,792 + MPMX20_01763 0.39 -3.8 1,854,792 + MPMX20_01763 0.39 +0.2 1,854,813 - MPMX20_01763 0.41 +0.8 1,854,827 + MPMX20_01763 0.42 -3.0 1,854,835 - MPMX20_01763 0.43 -0.8 1,854,922 + MPMX20_01763 0.50 -0.0 1,854,927 + MPMX20_01763 0.50 -2.5 1,854,932 + MPMX20_01763 0.51 -1.7 1,854,932 + MPMX20_01763 0.51 -0.9 1,854,935 - MPMX20_01763 0.51 -3.6 1,854,937 + MPMX20_01763 0.51 +0.2 1,854,950 - MPMX20_01763 0.52 +0.6 1,854,950 - MPMX20_01763 0.52 +1.0 1,855,008 + MPMX20_01763 0.57 -0.6 1,855,030 - MPMX20_01763 0.59 +0.6 1,855,056 - MPMX20_01763 0.61 +0.8 1,855,095 + MPMX20_01763 0.64 +0.3 1,855,244 + MPMX20_01763 0.76 -2.4 1,855,273 - MPMX20_01763 0.79 +4.2 1,855,369 + MPMX20_01763 0.87 +0.2 1,855,451 + -2.9 1,855,519 + +1.0 1,855,546 + -0.3 1,855,554 - +1.0 1,855,588 + -0.0 1,855,593 + -0.1 1,855,596 - +1.0 1,855,675 - +0.5 1,855,685 + -3.1 1,855,732 - -0.3 1,855,744 + MPMX20_01764 0.11 -0.2 1,855,884 - MPMX20_01764 0.26 +0.8 1,855,914 + MPMX20_01764 0.29 -0.9 1,855,961 + MPMX20_01764 0.34 -2.0 1,855,969 - MPMX20_01764 0.35 -0.1 1,856,007 + MPMX20_01764 0.39 +0.8 1,856,015 - MPMX20_01764 0.40 -0.2 1,856,076 + MPMX20_01764 0.47 -1.4 1,856,120 + MPMX20_01764 0.51 -3.0 1,856,138 - MPMX20_01764 0.53 -1.8 1,856,140 + MPMX20_01764 0.53 +0.2 1,856,148 - MPMX20_01764 0.54 -0.6 1,856,148 - MPMX20_01764 0.54 -0.3 1,856,150 + MPMX20_01764 0.54 -0.2 1,856,150 + MPMX20_01764 0.54 -0.8 1,856,162 + MPMX20_01764 0.56 -1.9 1,856,240 + MPMX20_01764 0.64 +0.4 1,856,305 - MPMX20_01764 0.71 +0.5 1,856,356 + MPMX20_01764 0.76 -0.7 1,856,364 - MPMX20_01764 0.77 -2.5 1,856,365 - MPMX20_01764 0.77 -2.7 1,856,720 - -3.0 1,856,819 - -2.6 1,857,042 + MPMX20_01765 0.14 -0.5 1,857,120 - MPMX20_01765 0.16 -2.3 1,857,244 - MPMX20_01765 0.20 -2.5 1,857,314 - MPMX20_01765 0.22 -1.2 1,857,406 - MPMX20_01765 0.25 -0.6 1,857,419 + MPMX20_01765 0.26 -1.4
Or see this region's nucleotide sequence