Experiment: M9 plate, Mixed culture; Bacillus pumilus TBS_104 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01741 and MPMX20_01742 are separated by 126 nucleotides MPMX20_01742 and MPMX20_01743 are separated by 124 nucleotides MPMX20_01743 and MPMX20_01744 are separated by 236 nucleotides MPMX20_01744 and MPMX20_01745 are separated by 9 nucleotides
MPMX20_01741: MPMX20_01741 - Dihydroorotase, at 1,835,495 to 1,836,541
_01741
MPMX20_01742: MPMX20_01742 - putative lipoprotein YceB, at 1,836,668 to 1,837,228
_01742
MPMX20_01743: MPMX20_01743 - Multidrug resistance protein MdtH, at 1,837,353 to 1,838,561
_01743
MPMX20_01744: MPMX20_01744 - [Ribosomal protein S5]-alanine N-acetyltransferase, at 1,838,798 to 1,839,382
_01744
MPMX20_01745: MPMX20_01745 - hypothetical protein, at 1,839,392 to 1,840,042
_01745
Position (kb)
1837
1838
1839 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 1836.384 kb on + strand, within MPMX20_01741 at 1836.436 kb on - strand, within MPMX20_01741 at 1836.443 kb on + strand at 1836.444 kb on + strand at 1836.451 kb on - strand at 1836.451 kb on - strand at 1836.452 kb on - strand at 1836.530 kb on - strand at 1836.545 kb on + strand at 1836.554 kb on - strand at 1836.651 kb on + strand at 1836.665 kb on + strand at 1836.700 kb on + strand at 1836.706 kb on + strand at 1836.714 kb on - strand at 1836.737 kb on + strand, within MPMX20_01742 at 1836.737 kb on + strand, within MPMX20_01742 at 1836.744 kb on + strand, within MPMX20_01742 at 1836.744 kb on + strand, within MPMX20_01742 at 1836.745 kb on - strand, within MPMX20_01742 at 1836.745 kb on - strand, within MPMX20_01742 at 1836.752 kb on - strand, within MPMX20_01742 at 1836.752 kb on - strand, within MPMX20_01742 at 1836.754 kb on + strand, within MPMX20_01742 at 1836.766 kb on + strand, within MPMX20_01742 at 1836.767 kb on + strand, within MPMX20_01742 at 1836.792 kb on - strand, within MPMX20_01742 at 1836.818 kb on + strand, within MPMX20_01742 at 1836.828 kb on - strand, within MPMX20_01742 at 1836.840 kb on + strand, within MPMX20_01742 at 1836.848 kb on - strand, within MPMX20_01742 at 1836.884 kb on - strand, within MPMX20_01742 at 1836.930 kb on + strand, within MPMX20_01742 at 1836.938 kb on - strand, within MPMX20_01742 at 1836.973 kb on - strand, within MPMX20_01742 at 1837.033 kb on + strand, within MPMX20_01742 at 1837.041 kb on - strand, within MPMX20_01742 at 1837.052 kb on + strand, within MPMX20_01742 at 1837.168 kb on + strand, within MPMX20_01742 at 1837.168 kb on + strand, within MPMX20_01742 at 1837.168 kb on + strand, within MPMX20_01742 at 1837.168 kb on + strand, within MPMX20_01742 at 1837.168 kb on + strand, within MPMX20_01742 at 1837.173 kb on + strand at 1837.176 kb on - strand at 1837.176 kb on - strand at 1837.176 kb on - strand at 1837.230 kb on + strand at 1837.254 kb on + strand at 1837.450 kb on + strand at 1837.478 kb on - strand, within MPMX20_01743 at 1837.523 kb on - strand, within MPMX20_01743 at 1837.624 kb on - strand, within MPMX20_01743 at 1837.635 kb on + strand, within MPMX20_01743 at 1837.653 kb on - strand, within MPMX20_01743 at 1837.675 kb on + strand, within MPMX20_01743 at 1837.694 kb on + strand, within MPMX20_01743 at 1837.702 kb on - strand, within MPMX20_01743 at 1837.747 kb on - strand, within MPMX20_01743 at 1837.777 kb on + strand, within MPMX20_01743 at 1837.785 kb on - strand, within MPMX20_01743 at 1837.861 kb on + strand, within MPMX20_01743 at 1837.877 kb on + strand, within MPMX20_01743 at 1837.894 kb on + strand, within MPMX20_01743 at 1837.941 kb on + strand, within MPMX20_01743 at 1837.956 kb on + strand, within MPMX20_01743 at 1837.964 kb on - strand, within MPMX20_01743 at 1837.964 kb on - strand, within MPMX20_01743 at 1837.964 kb on - strand, within MPMX20_01743 at 1838.013 kb on - strand, within MPMX20_01743 at 1838.017 kb on + strand, within MPMX20_01743 at 1838.017 kb on + strand, within MPMX20_01743 at 1838.025 kb on - strand, within MPMX20_01743 at 1838.059 kb on + strand, within MPMX20_01743 at 1838.064 kb on + strand, within MPMX20_01743 at 1838.097 kb on + strand, within MPMX20_01743 at 1838.097 kb on + strand, within MPMX20_01743 at 1838.097 kb on + strand, within MPMX20_01743 at 1838.105 kb on - strand, within MPMX20_01743 at 1838.125 kb on + strand, within MPMX20_01743 at 1838.128 kb on - strand, within MPMX20_01743 at 1838.130 kb on + strand, within MPMX20_01743 at 1838.130 kb on + strand, within MPMX20_01743 at 1838.130 kb on + strand, within MPMX20_01743 at 1838.138 kb on - strand, within MPMX20_01743 at 1838.138 kb on - strand, within MPMX20_01743 at 1838.138 kb on - strand, within MPMX20_01743 at 1838.372 kb on + strand, within MPMX20_01743 at 1838.372 kb on + strand, within MPMX20_01743 at 1838.372 kb on + strand, within MPMX20_01743 at 1838.372 kb on - strand, within MPMX20_01743 at 1838.380 kb on - strand, within MPMX20_01743 at 1838.397 kb on + strand, within MPMX20_01743 at 1838.601 kb on - strand at 1838.616 kb on - strand at 1838.668 kb on + strand at 1838.743 kb on + strand at 1838.749 kb on - strand at 1838.847 kb on + strand at 1838.880 kb on - strand, within MPMX20_01744 at 1838.948 kb on - strand, within MPMX20_01744 at 1838.973 kb on + strand, within MPMX20_01744 at 1839.045 kb on - strand, within MPMX20_01744 at 1839.045 kb on - strand, within MPMX20_01744 at 1839.059 kb on + strand, within MPMX20_01744 at 1839.122 kb on - strand, within MPMX20_01744 at 1839.141 kb on + strand, within MPMX20_01744 at 1839.152 kb on + strand, within MPMX20_01744 at 1839.167 kb on + strand, within MPMX20_01744 at 1839.186 kb on + strand, within MPMX20_01744 at 1839.186 kb on + strand, within MPMX20_01744 at 1839.186 kb on + strand, within MPMX20_01744 at 1839.194 kb on - strand, within MPMX20_01744 at 1839.216 kb on + strand, within MPMX20_01744 at 1839.237 kb on - strand, within MPMX20_01744 at 1839.250 kb on - strand, within MPMX20_01744 at 1839.289 kb on + strand, within MPMX20_01744 at 1839.297 kb on - strand, within MPMX20_01744 at 1839.337 kb on + strand at 1839.347 kb on + strand at 1839.347 kb on + strand at 1839.355 kb on - strand at 1839.361 kb on + strand at 1839.361 kb on + strand at 1839.361 kb on + strand at 1839.361 kb on + strand at 1839.361 kb on + strand at 1839.361 kb on + strand at 1839.361 kb on + strand at 1839.361 kb on + strand at 1839.366 kb on + strand at 1839.369 kb on - strand at 1839.369 kb on - strand at 1839.369 kb on - strand at 1839.369 kb on - strand at 1839.369 kb on - strand at 1839.369 kb on - strand at 1839.369 kb on - strand at 1839.369 kb on - strand at 1839.374 kb on - strand at 1839.411 kb on + strand at 1839.411 kb on + strand at 1839.411 kb on + strand at 1839.419 kb on - strand at 1839.419 kb on - strand at 1839.419 kb on - strand at 1839.508 kb on + strand, within MPMX20_01745 at 1839.561 kb on - strand, within MPMX20_01745
Per-strain Table
Position Strand Gene LocusTag Fraction M9 plate, Mixed culture; Bacillus pumilus TBS_104 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct remove 1,836,384 + MPMX20_01741 0.85 -2.6 1,836,436 - MPMX20_01741 0.90 +1.4 1,836,443 + -0.9 1,836,444 + -0.9 1,836,451 - -0.6 1,836,451 - -0.6 1,836,452 - -1.6 1,836,530 - -2.3 1,836,545 + -2.6 1,836,554 - -4.3 1,836,651 + -1.4 1,836,665 + -0.0 1,836,700 + +0.5 1,836,706 + +1.1 1,836,714 - +0.6 1,836,737 + MPMX20_01742 0.12 -0.2 1,836,737 + MPMX20_01742 0.12 +0.1 1,836,744 + MPMX20_01742 0.14 -1.2 1,836,744 + MPMX20_01742 0.14 +1.4 1,836,745 - MPMX20_01742 0.14 +1.1 1,836,745 - MPMX20_01742 0.14 +1.2 1,836,752 - MPMX20_01742 0.15 +0.8 1,836,752 - MPMX20_01742 0.15 -1.8 1,836,754 + MPMX20_01742 0.15 -0.5 1,836,766 + MPMX20_01742 0.17 +1.2 1,836,767 + MPMX20_01742 0.18 -1.2 1,836,792 - MPMX20_01742 0.22 +0.5 1,836,818 + MPMX20_01742 0.27 -0.8 1,836,828 - MPMX20_01742 0.29 -3.2 1,836,840 + MPMX20_01742 0.31 +0.3 1,836,848 - MPMX20_01742 0.32 +2.3 1,836,884 - MPMX20_01742 0.39 -1.0 1,836,930 + MPMX20_01742 0.47 +0.2 1,836,938 - MPMX20_01742 0.48 -0.1 1,836,973 - MPMX20_01742 0.54 -1.2 1,837,033 + MPMX20_01742 0.65 -2.6 1,837,041 - MPMX20_01742 0.66 -0.9 1,837,052 + MPMX20_01742 0.68 -0.3 1,837,168 + MPMX20_01742 0.89 -3.8 1,837,168 + MPMX20_01742 0.89 -1.9 1,837,168 + MPMX20_01742 0.89 -1.9 1,837,168 + MPMX20_01742 0.89 +0.9 1,837,168 + MPMX20_01742 0.89 -0.9 1,837,173 + -1.3 1,837,176 - -0.5 1,837,176 - +1.0 1,837,176 - +1.2 1,837,230 + +0.3 1,837,254 + +1.4 1,837,450 + -2.6 1,837,478 - MPMX20_01743 0.10 +0.8 1,837,523 - MPMX20_01743 0.14 -0.6 1,837,624 - MPMX20_01743 0.22 +0.2 1,837,635 + MPMX20_01743 0.23 +0.3 1,837,653 - MPMX20_01743 0.25 +0.2 1,837,675 + MPMX20_01743 0.27 -1.6 1,837,694 + MPMX20_01743 0.28 -1.4 1,837,702 - MPMX20_01743 0.29 +2.8 1,837,747 - MPMX20_01743 0.33 -2.9 1,837,777 + MPMX20_01743 0.35 -0.6 1,837,785 - MPMX20_01743 0.36 -4.2 1,837,861 + MPMX20_01743 0.42 -1.4 1,837,877 + MPMX20_01743 0.43 -1.1 1,837,894 + MPMX20_01743 0.45 -1.2 1,837,941 + MPMX20_01743 0.49 +0.4 1,837,956 + MPMX20_01743 0.50 -2.3 1,837,964 - MPMX20_01743 0.51 -2.3 1,837,964 - MPMX20_01743 0.51 +2.0 1,837,964 - MPMX20_01743 0.51 -2.8 1,838,013 - MPMX20_01743 0.55 +0.2 1,838,017 + MPMX20_01743 0.55 +0.4 1,838,017 + MPMX20_01743 0.55 -1.3 1,838,025 - MPMX20_01743 0.56 -1.7 1,838,059 + MPMX20_01743 0.58 -0.7 1,838,064 + MPMX20_01743 0.59 -0.3 1,838,097 + MPMX20_01743 0.62 -1.6 1,838,097 + MPMX20_01743 0.62 -0.2 1,838,097 + MPMX20_01743 0.62 +0.8 1,838,105 - MPMX20_01743 0.62 -1.1 1,838,125 + MPMX20_01743 0.64 -0.7 1,838,128 - MPMX20_01743 0.64 +0.3 1,838,130 + MPMX20_01743 0.64 +0.5 1,838,130 + MPMX20_01743 0.64 -0.4 1,838,130 + MPMX20_01743 0.64 +1.4 1,838,138 - MPMX20_01743 0.65 -0.1 1,838,138 - MPMX20_01743 0.65 +0.5 1,838,138 - MPMX20_01743 0.65 +0.8 1,838,372 + MPMX20_01743 0.84 -1.4 1,838,372 + MPMX20_01743 0.84 +0.3 1,838,372 + MPMX20_01743 0.84 -3.9 1,838,372 - MPMX20_01743 0.84 +1.4 1,838,380 - MPMX20_01743 0.85 -1.6 1,838,397 + MPMX20_01743 0.86 -4.1 1,838,601 - -2.9 1,838,616 - -1.0 1,838,668 + -1.5 1,838,743 + +1.4 1,838,749 - -1.8 1,838,847 + +0.9 1,838,880 - MPMX20_01744 0.14 -0.2 1,838,948 - MPMX20_01744 0.26 -0.3 1,838,973 + MPMX20_01744 0.30 +0.1 1,839,045 - MPMX20_01744 0.42 +0.4 1,839,045 - MPMX20_01744 0.42 -0.9 1,839,059 + MPMX20_01744 0.45 -1.8 1,839,122 - MPMX20_01744 0.55 -1.9 1,839,141 + MPMX20_01744 0.59 +0.7 1,839,152 + MPMX20_01744 0.61 +0.4 1,839,167 + MPMX20_01744 0.63 -0.6 1,839,186 + MPMX20_01744 0.66 -2.4 1,839,186 + MPMX20_01744 0.66 -0.6 1,839,186 + MPMX20_01744 0.66 -1.2 1,839,194 - MPMX20_01744 0.68 +3.0 1,839,216 + MPMX20_01744 0.71 -1.4 1,839,237 - MPMX20_01744 0.75 +0.3 1,839,250 - MPMX20_01744 0.77 +0.9 1,839,289 + MPMX20_01744 0.84 +2.4 1,839,297 - MPMX20_01744 0.85 +0.6 1,839,337 + +1.7 1,839,347 + -1.4 1,839,347 + -1.9 1,839,355 - -0.4 1,839,361 + +0.0 1,839,361 + +1.7 1,839,361 + -0.8 1,839,361 + -0.8 1,839,361 + -1.8 1,839,361 + -0.9 1,839,361 + -3.4 1,839,361 + +0.4 1,839,366 + -1.8 1,839,369 - +1.3 1,839,369 - -1.9 1,839,369 - -3.5 1,839,369 - -0.7 1,839,369 - -0.9 1,839,369 - +0.1 1,839,369 - -3.1 1,839,369 - -2.7 1,839,374 - -0.5 1,839,411 + -2.6 1,839,411 + -0.3 1,839,411 + -3.8 1,839,419 - -1.4 1,839,419 - -2.8 1,839,419 - -0.1 1,839,508 + MPMX20_01745 0.18 -1.6 1,839,561 - MPMX20_01745 0.26 -2.7
Or see this region's nucleotide sequence