Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01743

Experiment: M9 plate, Mixed culture; Bacillus pumilus TBS_104 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01741 and MPMX20_01742 are separated by 126 nucleotidesMPMX20_01742 and MPMX20_01743 are separated by 124 nucleotidesMPMX20_01743 and MPMX20_01744 are separated by 236 nucleotidesMPMX20_01744 and MPMX20_01745 are separated by 9 nucleotides MPMX20_01741: MPMX20_01741 - Dihydroorotase, at 1,835,495 to 1,836,541 _01741 MPMX20_01742: MPMX20_01742 - putative lipoprotein YceB, at 1,836,668 to 1,837,228 _01742 MPMX20_01743: MPMX20_01743 - Multidrug resistance protein MdtH, at 1,837,353 to 1,838,561 _01743 MPMX20_01744: MPMX20_01744 - [Ribosomal protein S5]-alanine N-acetyltransferase, at 1,838,798 to 1,839,382 _01744 MPMX20_01745: MPMX20_01745 - hypothetical protein, at 1,839,392 to 1,840,042 _01745 Position (kb) 1837 1838 1839Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1836.384 kb on + strand, within MPMX20_01741at 1836.436 kb on - strand, within MPMX20_01741at 1836.443 kb on + strandat 1836.444 kb on + strandat 1836.451 kb on - strandat 1836.451 kb on - strandat 1836.452 kb on - strandat 1836.530 kb on - strandat 1836.545 kb on + strandat 1836.554 kb on - strandat 1836.651 kb on + strandat 1836.665 kb on + strandat 1836.700 kb on + strandat 1836.706 kb on + strandat 1836.714 kb on - strandat 1836.737 kb on + strand, within MPMX20_01742at 1836.737 kb on + strand, within MPMX20_01742at 1836.744 kb on + strand, within MPMX20_01742at 1836.744 kb on + strand, within MPMX20_01742at 1836.745 kb on - strand, within MPMX20_01742at 1836.745 kb on - strand, within MPMX20_01742at 1836.752 kb on - strand, within MPMX20_01742at 1836.752 kb on - strand, within MPMX20_01742at 1836.754 kb on + strand, within MPMX20_01742at 1836.766 kb on + strand, within MPMX20_01742at 1836.767 kb on + strand, within MPMX20_01742at 1836.792 kb on - strand, within MPMX20_01742at 1836.818 kb on + strand, within MPMX20_01742at 1836.828 kb on - strand, within MPMX20_01742at 1836.840 kb on + strand, within MPMX20_01742at 1836.848 kb on - strand, within MPMX20_01742at 1836.884 kb on - strand, within MPMX20_01742at 1836.930 kb on + strand, within MPMX20_01742at 1836.938 kb on - strand, within MPMX20_01742at 1836.973 kb on - strand, within MPMX20_01742at 1837.033 kb on + strand, within MPMX20_01742at 1837.041 kb on - strand, within MPMX20_01742at 1837.052 kb on + strand, within MPMX20_01742at 1837.168 kb on + strand, within MPMX20_01742at 1837.168 kb on + strand, within MPMX20_01742at 1837.168 kb on + strand, within MPMX20_01742at 1837.168 kb on + strand, within MPMX20_01742at 1837.168 kb on + strand, within MPMX20_01742at 1837.173 kb on + strandat 1837.176 kb on - strandat 1837.176 kb on - strandat 1837.176 kb on - strandat 1837.230 kb on + strandat 1837.254 kb on + strandat 1837.450 kb on + strandat 1837.478 kb on - strand, within MPMX20_01743at 1837.523 kb on - strand, within MPMX20_01743at 1837.624 kb on - strand, within MPMX20_01743at 1837.635 kb on + strand, within MPMX20_01743at 1837.653 kb on - strand, within MPMX20_01743at 1837.675 kb on + strand, within MPMX20_01743at 1837.694 kb on + strand, within MPMX20_01743at 1837.702 kb on - strand, within MPMX20_01743at 1837.747 kb on - strand, within MPMX20_01743at 1837.777 kb on + strand, within MPMX20_01743at 1837.785 kb on - strand, within MPMX20_01743at 1837.861 kb on + strand, within MPMX20_01743at 1837.877 kb on + strand, within MPMX20_01743at 1837.894 kb on + strand, within MPMX20_01743at 1837.941 kb on + strand, within MPMX20_01743at 1837.956 kb on + strand, within MPMX20_01743at 1837.964 kb on - strand, within MPMX20_01743at 1837.964 kb on - strand, within MPMX20_01743at 1837.964 kb on - strand, within MPMX20_01743at 1838.013 kb on - strand, within MPMX20_01743at 1838.017 kb on + strand, within MPMX20_01743at 1838.017 kb on + strand, within MPMX20_01743at 1838.025 kb on - strand, within MPMX20_01743at 1838.059 kb on + strand, within MPMX20_01743at 1838.064 kb on + strand, within MPMX20_01743at 1838.097 kb on + strand, within MPMX20_01743at 1838.097 kb on + strand, within MPMX20_01743at 1838.097 kb on + strand, within MPMX20_01743at 1838.105 kb on - strand, within MPMX20_01743at 1838.125 kb on + strand, within MPMX20_01743at 1838.128 kb on - strand, within MPMX20_01743at 1838.130 kb on + strand, within MPMX20_01743at 1838.130 kb on + strand, within MPMX20_01743at 1838.130 kb on + strand, within MPMX20_01743at 1838.138 kb on - strand, within MPMX20_01743at 1838.138 kb on - strand, within MPMX20_01743at 1838.138 kb on - strand, within MPMX20_01743at 1838.372 kb on + strand, within MPMX20_01743at 1838.372 kb on + strand, within MPMX20_01743at 1838.372 kb on + strand, within MPMX20_01743at 1838.372 kb on - strand, within MPMX20_01743at 1838.380 kb on - strand, within MPMX20_01743at 1838.397 kb on + strand, within MPMX20_01743at 1838.601 kb on - strandat 1838.616 kb on - strandat 1838.668 kb on + strandat 1838.743 kb on + strandat 1838.749 kb on - strandat 1838.847 kb on + strandat 1838.880 kb on - strand, within MPMX20_01744at 1838.948 kb on - strand, within MPMX20_01744at 1838.973 kb on + strand, within MPMX20_01744at 1839.045 kb on - strand, within MPMX20_01744at 1839.045 kb on - strand, within MPMX20_01744at 1839.059 kb on + strand, within MPMX20_01744at 1839.122 kb on - strand, within MPMX20_01744at 1839.141 kb on + strand, within MPMX20_01744at 1839.152 kb on + strand, within MPMX20_01744at 1839.167 kb on + strand, within MPMX20_01744at 1839.186 kb on + strand, within MPMX20_01744at 1839.186 kb on + strand, within MPMX20_01744at 1839.186 kb on + strand, within MPMX20_01744at 1839.194 kb on - strand, within MPMX20_01744at 1839.216 kb on + strand, within MPMX20_01744at 1839.237 kb on - strand, within MPMX20_01744at 1839.250 kb on - strand, within MPMX20_01744at 1839.289 kb on + strand, within MPMX20_01744at 1839.297 kb on - strand, within MPMX20_01744at 1839.337 kb on + strandat 1839.347 kb on + strandat 1839.347 kb on + strandat 1839.355 kb on - strandat 1839.361 kb on + strandat 1839.361 kb on + strandat 1839.361 kb on + strandat 1839.361 kb on + strandat 1839.361 kb on + strandat 1839.361 kb on + strandat 1839.361 kb on + strandat 1839.361 kb on + strandat 1839.366 kb on + strandat 1839.369 kb on - strandat 1839.369 kb on - strandat 1839.369 kb on - strandat 1839.369 kb on - strandat 1839.369 kb on - strandat 1839.369 kb on - strandat 1839.369 kb on - strandat 1839.369 kb on - strandat 1839.374 kb on - strandat 1839.411 kb on + strandat 1839.411 kb on + strandat 1839.411 kb on + strandat 1839.419 kb on - strandat 1839.419 kb on - strandat 1839.419 kb on - strandat 1839.508 kb on + strand, within MPMX20_01745at 1839.561 kb on - strand, within MPMX20_01745

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 plate, Mixed culture; Bacillus pumilus TBS_104 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
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1,836,384 + MPMX20_01741 0.85 -2.6
1,836,436 - MPMX20_01741 0.90 +1.4
1,836,443 + -0.9
1,836,444 + -0.9
1,836,451 - -0.6
1,836,451 - -0.6
1,836,452 - -1.6
1,836,530 - -2.3
1,836,545 + -2.6
1,836,554 - -4.3
1,836,651 + -1.4
1,836,665 + -0.0
1,836,700 + +0.5
1,836,706 + +1.1
1,836,714 - +0.6
1,836,737 + MPMX20_01742 0.12 -0.2
1,836,737 + MPMX20_01742 0.12 +0.1
1,836,744 + MPMX20_01742 0.14 -1.2
1,836,744 + MPMX20_01742 0.14 +1.4
1,836,745 - MPMX20_01742 0.14 +1.1
1,836,745 - MPMX20_01742 0.14 +1.2
1,836,752 - MPMX20_01742 0.15 +0.8
1,836,752 - MPMX20_01742 0.15 -1.8
1,836,754 + MPMX20_01742 0.15 -0.5
1,836,766 + MPMX20_01742 0.17 +1.2
1,836,767 + MPMX20_01742 0.18 -1.2
1,836,792 - MPMX20_01742 0.22 +0.5
1,836,818 + MPMX20_01742 0.27 -0.8
1,836,828 - MPMX20_01742 0.29 -3.2
1,836,840 + MPMX20_01742 0.31 +0.3
1,836,848 - MPMX20_01742 0.32 +2.3
1,836,884 - MPMX20_01742 0.39 -1.0
1,836,930 + MPMX20_01742 0.47 +0.2
1,836,938 - MPMX20_01742 0.48 -0.1
1,836,973 - MPMX20_01742 0.54 -1.2
1,837,033 + MPMX20_01742 0.65 -2.6
1,837,041 - MPMX20_01742 0.66 -0.9
1,837,052 + MPMX20_01742 0.68 -0.3
1,837,168 + MPMX20_01742 0.89 -3.8
1,837,168 + MPMX20_01742 0.89 -1.9
1,837,168 + MPMX20_01742 0.89 -1.9
1,837,168 + MPMX20_01742 0.89 +0.9
1,837,168 + MPMX20_01742 0.89 -0.9
1,837,173 + -1.3
1,837,176 - -0.5
1,837,176 - +1.0
1,837,176 - +1.2
1,837,230 + +0.3
1,837,254 + +1.4
1,837,450 + -2.6
1,837,478 - MPMX20_01743 0.10 +0.8
1,837,523 - MPMX20_01743 0.14 -0.6
1,837,624 - MPMX20_01743 0.22 +0.2
1,837,635 + MPMX20_01743 0.23 +0.3
1,837,653 - MPMX20_01743 0.25 +0.2
1,837,675 + MPMX20_01743 0.27 -1.6
1,837,694 + MPMX20_01743 0.28 -1.4
1,837,702 - MPMX20_01743 0.29 +2.8
1,837,747 - MPMX20_01743 0.33 -2.9
1,837,777 + MPMX20_01743 0.35 -0.6
1,837,785 - MPMX20_01743 0.36 -4.2
1,837,861 + MPMX20_01743 0.42 -1.4
1,837,877 + MPMX20_01743 0.43 -1.1
1,837,894 + MPMX20_01743 0.45 -1.2
1,837,941 + MPMX20_01743 0.49 +0.4
1,837,956 + MPMX20_01743 0.50 -2.3
1,837,964 - MPMX20_01743 0.51 -2.3
1,837,964 - MPMX20_01743 0.51 +2.0
1,837,964 - MPMX20_01743 0.51 -2.8
1,838,013 - MPMX20_01743 0.55 +0.2
1,838,017 + MPMX20_01743 0.55 +0.4
1,838,017 + MPMX20_01743 0.55 -1.3
1,838,025 - MPMX20_01743 0.56 -1.7
1,838,059 + MPMX20_01743 0.58 -0.7
1,838,064 + MPMX20_01743 0.59 -0.3
1,838,097 + MPMX20_01743 0.62 -1.6
1,838,097 + MPMX20_01743 0.62 -0.2
1,838,097 + MPMX20_01743 0.62 +0.8
1,838,105 - MPMX20_01743 0.62 -1.1
1,838,125 + MPMX20_01743 0.64 -0.7
1,838,128 - MPMX20_01743 0.64 +0.3
1,838,130 + MPMX20_01743 0.64 +0.5
1,838,130 + MPMX20_01743 0.64 -0.4
1,838,130 + MPMX20_01743 0.64 +1.4
1,838,138 - MPMX20_01743 0.65 -0.1
1,838,138 - MPMX20_01743 0.65 +0.5
1,838,138 - MPMX20_01743 0.65 +0.8
1,838,372 + MPMX20_01743 0.84 -1.4
1,838,372 + MPMX20_01743 0.84 +0.3
1,838,372 + MPMX20_01743 0.84 -3.9
1,838,372 - MPMX20_01743 0.84 +1.4
1,838,380 - MPMX20_01743 0.85 -1.6
1,838,397 + MPMX20_01743 0.86 -4.1
1,838,601 - -2.9
1,838,616 - -1.0
1,838,668 + -1.5
1,838,743 + +1.4
1,838,749 - -1.8
1,838,847 + +0.9
1,838,880 - MPMX20_01744 0.14 -0.2
1,838,948 - MPMX20_01744 0.26 -0.3
1,838,973 + MPMX20_01744 0.30 +0.1
1,839,045 - MPMX20_01744 0.42 +0.4
1,839,045 - MPMX20_01744 0.42 -0.9
1,839,059 + MPMX20_01744 0.45 -1.8
1,839,122 - MPMX20_01744 0.55 -1.9
1,839,141 + MPMX20_01744 0.59 +0.7
1,839,152 + MPMX20_01744 0.61 +0.4
1,839,167 + MPMX20_01744 0.63 -0.6
1,839,186 + MPMX20_01744 0.66 -2.4
1,839,186 + MPMX20_01744 0.66 -0.6
1,839,186 + MPMX20_01744 0.66 -1.2
1,839,194 - MPMX20_01744 0.68 +3.0
1,839,216 + MPMX20_01744 0.71 -1.4
1,839,237 - MPMX20_01744 0.75 +0.3
1,839,250 - MPMX20_01744 0.77 +0.9
1,839,289 + MPMX20_01744 0.84 +2.4
1,839,297 - MPMX20_01744 0.85 +0.6
1,839,337 + +1.7
1,839,347 + -1.4
1,839,347 + -1.9
1,839,355 - -0.4
1,839,361 + +0.0
1,839,361 + +1.7
1,839,361 + -0.8
1,839,361 + -0.8
1,839,361 + -1.8
1,839,361 + -0.9
1,839,361 + -3.4
1,839,361 + +0.4
1,839,366 + -1.8
1,839,369 - +1.3
1,839,369 - -1.9
1,839,369 - -3.5
1,839,369 - -0.7
1,839,369 - -0.9
1,839,369 - +0.1
1,839,369 - -3.1
1,839,369 - -2.7
1,839,374 - -0.5
1,839,411 + -2.6
1,839,411 + -0.3
1,839,411 + -3.8
1,839,419 - -1.4
1,839,419 - -2.8
1,839,419 - -0.1
1,839,508 + MPMX20_01745 0.18 -1.6
1,839,561 - MPMX20_01745 0.26 -2.7

Or see this region's nucleotide sequence