Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00476

Experiment: M9 plate, Mixed culture; Bacillus pumilus TBS_104 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_00474 and MPMX20_00475 overlap by 8 nucleotidesMPMX20_00475 and MPMX20_00476 are separated by 142 nucleotidesMPMX20_00476 and MPMX20_00477 are separated by 341 nucleotidesMPMX20_00477 and MPMX20_00478 are separated by 6 nucleotides MPMX20_00474: MPMX20_00474 - L-ribulose-5-phosphate 3-epimerase UlaE, at 489,724 to 490,584 _00474 MPMX20_00475: MPMX20_00475 - L-ribulose-5-phosphate 4-epimerase UlaF, at 490,577 to 491,263 _00475 MPMX20_00476: MPMX20_00476 - hypothetical protein, at 491,406 to 491,681 _00476 MPMX20_00477: MPMX20_00477 - 30S ribosomal protein S6, at 492,023 to 492,418 _00477 MPMX20_00478: MPMX20_00478 - Primosomal replication protein N, at 492,425 to 492,739 _00478 Position (kb) 491 492Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5 6at 490.460 kb on + strand, within MPMX20_00474at 490.460 kb on + strand, within MPMX20_00474at 490.468 kb on - strand, within MPMX20_00474at 490.476 kb on + strand, within MPMX20_00474at 490.476 kb on + strand, within MPMX20_00474at 490.567 kb on - strandat 490.584 kb on + strandat 490.584 kb on + strandat 490.586 kb on - strandat 490.587 kb on - strandat 490.592 kb on - strandat 490.592 kb on - strandat 490.634 kb on + strandat 490.651 kb on + strand, within MPMX20_00475at 490.653 kb on - strand, within MPMX20_00475at 490.665 kb on - strand, within MPMX20_00475at 490.671 kb on + strand, within MPMX20_00475at 490.679 kb on - strand, within MPMX20_00475at 490.679 kb on - strand, within MPMX20_00475at 490.699 kb on + strand, within MPMX20_00475at 490.699 kb on + strand, within MPMX20_00475at 490.707 kb on - strand, within MPMX20_00475at 490.711 kb on + strand, within MPMX20_00475at 490.721 kb on - strand, within MPMX20_00475at 490.811 kb on - strand, within MPMX20_00475at 490.817 kb on - strand, within MPMX20_00475at 490.819 kb on + strand, within MPMX20_00475at 490.825 kb on + strand, within MPMX20_00475at 490.833 kb on - strand, within MPMX20_00475at 490.833 kb on - strand, within MPMX20_00475at 490.833 kb on - strand, within MPMX20_00475at 490.838 kb on - strand, within MPMX20_00475at 490.962 kb on + strand, within MPMX20_00475at 490.996 kb on + strand, within MPMX20_00475at 491.029 kb on + strand, within MPMX20_00475at 491.054 kb on - strand, within MPMX20_00475at 491.068 kb on + strand, within MPMX20_00475at 491.079 kb on + strand, within MPMX20_00475at 491.079 kb on + strand, within MPMX20_00475at 491.087 kb on - strand, within MPMX20_00475at 491.111 kb on + strand, within MPMX20_00475at 491.119 kb on - strand, within MPMX20_00475at 491.121 kb on + strand, within MPMX20_00475at 491.129 kb on - strand, within MPMX20_00475at 491.169 kb on + strand, within MPMX20_00475at 491.182 kb on + strand, within MPMX20_00475at 491.182 kb on + strand, within MPMX20_00475at 491.190 kb on - strand, within MPMX20_00475at 491.257 kb on + strandat 491.260 kb on + strandat 491.268 kb on - strandat 491.347 kb on - strandat 491.362 kb on + strandat 491.370 kb on - strandat 491.417 kb on + strandat 491.417 kb on + strandat 491.417 kb on + strandat 491.427 kb on + strandat 491.430 kb on - strandat 491.435 kb on - strand, within MPMX20_00476at 491.435 kb on - strand, within MPMX20_00476at 491.435 kb on - strand, within MPMX20_00476at 491.435 kb on - strand, within MPMX20_00476at 491.435 kb on - strand, within MPMX20_00476at 491.464 kb on + strand, within MPMX20_00476at 491.471 kb on + strand, within MPMX20_00476at 491.472 kb on - strand, within MPMX20_00476at 491.553 kb on + strand, within MPMX20_00476at 491.564 kb on + strand, within MPMX20_00476at 491.564 kb on + strand, within MPMX20_00476at 491.564 kb on + strand, within MPMX20_00476at 491.564 kb on + strand, within MPMX20_00476at 491.564 kb on + strand, within MPMX20_00476at 491.571 kb on + strand, within MPMX20_00476at 491.572 kb on - strand, within MPMX20_00476at 491.572 kb on - strand, within MPMX20_00476at 491.572 kb on - strand, within MPMX20_00476at 491.572 kb on - strand, within MPMX20_00476at 491.572 kb on - strand, within MPMX20_00476at 491.572 kb on - strand, within MPMX20_00476at 491.572 kb on - strand, within MPMX20_00476at 491.574 kb on - strand, within MPMX20_00476at 491.589 kb on + strand, within MPMX20_00476at 491.638 kb on - strand, within MPMX20_00476at 491.638 kb on - strand, within MPMX20_00476at 491.638 kb on - strand, within MPMX20_00476at 491.638 kb on - strand, within MPMX20_00476at 491.638 kb on - strand, within MPMX20_00476at 491.640 kb on + strand, within MPMX20_00476at 491.690 kb on + strandat 491.690 kb on + strandat 491.690 kb on + strandat 491.690 kb on + strandat 491.690 kb on + strandat 491.692 kb on + strandat 491.697 kb on + strandat 491.698 kb on - strandat 491.698 kb on - strandat 491.698 kb on - strandat 491.707 kb on + strandat 491.707 kb on + strandat 491.715 kb on - strandat 491.715 kb on - strandat 491.722 kb on - strandat 491.727 kb on - strandat 491.849 kb on + strandat 491.856 kb on - strandat 491.859 kb on + strandat 491.859 kb on + strandat 491.862 kb on - strandat 492.280 kb on + strand, within MPMX20_00477at 492.328 kb on + strand, within MPMX20_00477at 492.445 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 plate, Mixed culture; Bacillus pumilus TBS_104 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
remove
490,460 + MPMX20_00474 0.85 +0.5
490,460 + MPMX20_00474 0.85 -0.1
490,468 - MPMX20_00474 0.86 -0.8
490,476 + MPMX20_00474 0.87 +0.3
490,476 + MPMX20_00474 0.87 -0.6
490,567 - -1.9
490,584 + +1.4
490,584 + -0.3
490,586 - +0.7
490,587 - -0.9
490,592 - +0.4
490,592 - -0.9
490,634 + -0.9
490,651 + MPMX20_00475 0.11 -1.5
490,653 - MPMX20_00475 0.11 +0.6
490,665 - MPMX20_00475 0.13 -2.4
490,671 + MPMX20_00475 0.14 -0.1
490,679 - MPMX20_00475 0.15 +0.6
490,679 - MPMX20_00475 0.15 +2.0
490,699 + MPMX20_00475 0.18 -0.6
490,699 + MPMX20_00475 0.18 -0.2
490,707 - MPMX20_00475 0.19 -0.4
490,711 + MPMX20_00475 0.20 -0.0
490,721 - MPMX20_00475 0.21 -3.1
490,811 - MPMX20_00475 0.34 +1.0
490,817 - MPMX20_00475 0.35 -1.4
490,819 + MPMX20_00475 0.35 -2.5
490,825 + MPMX20_00475 0.36 -1.4
490,833 - MPMX20_00475 0.37 +0.2
490,833 - MPMX20_00475 0.37 -2.0
490,833 - MPMX20_00475 0.37 -0.9
490,838 - MPMX20_00475 0.38 -1.2
490,962 + MPMX20_00475 0.56 -1.5
490,996 + MPMX20_00475 0.61 -3.5
491,029 + MPMX20_00475 0.66 -3.0
491,054 - MPMX20_00475 0.69 -0.1
491,068 + MPMX20_00475 0.71 -1.7
491,079 + MPMX20_00475 0.73 -0.3
491,079 + MPMX20_00475 0.73 +0.4
491,087 - MPMX20_00475 0.74 -2.0
491,111 + MPMX20_00475 0.78 +0.4
491,119 - MPMX20_00475 0.79 +0.8
491,121 + MPMX20_00475 0.79 -0.4
491,129 - MPMX20_00475 0.80 +0.4
491,169 + MPMX20_00475 0.86 -1.2
491,182 + MPMX20_00475 0.88 -1.4
491,182 + MPMX20_00475 0.88 +0.7
491,190 - MPMX20_00475 0.89 -3.9
491,257 + -0.5
491,260 + +0.3
491,268 - -1.4
491,347 - +0.3
491,362 + -3.0
491,370 - +0.2
491,417 + -3.2
491,417 + +0.6
491,417 + +0.8
491,427 + -0.7
491,430 - -1.2
491,435 - MPMX20_00476 0.11 +0.9
491,435 - MPMX20_00476 0.11 +2.4
491,435 - MPMX20_00476 0.11 -0.8
491,435 - MPMX20_00476 0.11 +0.9
491,435 - MPMX20_00476 0.11 -0.5
491,464 + MPMX20_00476 0.21 +2.8
491,471 + MPMX20_00476 0.24 -2.9
491,472 - MPMX20_00476 0.24 -0.2
491,553 + MPMX20_00476 0.53 -1.9
491,564 + MPMX20_00476 0.57 -2.6
491,564 + MPMX20_00476 0.57 -0.6
491,564 + MPMX20_00476 0.57 +2.7
491,564 + MPMX20_00476 0.57 -0.2
491,564 + MPMX20_00476 0.57 -1.9
491,571 + MPMX20_00476 0.60 -1.2
491,572 - MPMX20_00476 0.60 +1.0
491,572 - MPMX20_00476 0.60 -1.4
491,572 - MPMX20_00476 0.60 -1.1
491,572 - MPMX20_00476 0.60 -1.9
491,572 - MPMX20_00476 0.60 +0.4
491,572 - MPMX20_00476 0.60 -0.5
491,572 - MPMX20_00476 0.60 +2.3
491,574 - MPMX20_00476 0.61 -2.2
491,589 + MPMX20_00476 0.66 -0.5
491,638 - MPMX20_00476 0.84 +1.1
491,638 - MPMX20_00476 0.84 -1.5
491,638 - MPMX20_00476 0.84 +1.5
491,638 - MPMX20_00476 0.84 +1.4
491,638 - MPMX20_00476 0.84 -0.6
491,640 + MPMX20_00476 0.85 -0.5
491,690 + -0.7
491,690 + -0.1
491,690 + -0.1
491,690 + +0.4
491,690 + -0.1
491,692 + +0.2
491,697 + +1.2
491,698 - +2.3
491,698 - -0.9
491,698 - +1.5
491,707 + +1.4
491,707 + +0.8
491,715 - +6.2
491,715 - +0.7
491,722 - -0.9
491,727 - -2.3
491,849 + +2.3
491,856 - -1.3
491,859 + -0.5
491,859 + -1.4
491,862 - -2.1
492,280 + MPMX20_00477 0.65 +0.4
492,328 + MPMX20_00477 0.77 +1.4
492,445 + -0.2

Or see this region's nucleotide sequence