Experiment: M9 plate, Mixed culture; Bacillus pumilus TBS_104 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_00080 and MPMX20_00081 are separated by 60 nucleotides MPMX20_00081 and MPMX20_00082 are separated by 119 nucleotides
MPMX20_00080: MPMX20_00080 - Alpha-xylosidase, at 78,933 to 81,251
_00080
MPMX20_00081: MPMX20_00081 - hypothetical protein, at 81,312 to 83,015
_00081
MPMX20_00082: MPMX20_00082 - Xanthine permease XanP, at 83,135 to 84,526
_00082
Position (kb) 81
82
83
84 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 80.352 kb on - strand, within MPMX20_00080 at 80.354 kb on - strand, within MPMX20_00080 at 80.397 kb on - strand, within MPMX20_00080 at 80.458 kb on + strand, within MPMX20_00080 at 80.595 kb on - strand, within MPMX20_00080 at 80.609 kb on - strand, within MPMX20_00080 at 80.624 kb on + strand, within MPMX20_00080 at 80.624 kb on + strand, within MPMX20_00080 at 80.654 kb on + strand, within MPMX20_00080 at 80.664 kb on + strand, within MPMX20_00080 at 80.664 kb on + strand, within MPMX20_00080 at 80.664 kb on + strand, within MPMX20_00080 at 80.664 kb on + strand, within MPMX20_00080 at 80.664 kb on + strand, within MPMX20_00080 at 80.664 kb on + strand, within MPMX20_00080 at 80.678 kb on + strand, within MPMX20_00080 at 80.678 kb on + strand, within MPMX20_00080 at 80.696 kb on - strand, within MPMX20_00080 at 80.789 kb on - strand, within MPMX20_00080 at 80.798 kb on + strand, within MPMX20_00080 at 80.844 kb on - strand, within MPMX20_00080 at 80.878 kb on + strand, within MPMX20_00080 at 80.924 kb on + strand, within MPMX20_00080 at 80.957 kb on + strand, within MPMX20_00080 at 81.078 kb on + strand at 81.078 kb on + strand at 81.193 kb on + strand at 81.220 kb on - strand at 81.224 kb on + strand at 81.233 kb on - strand at 81.234 kb on - strand at 81.245 kb on + strand at 81.261 kb on + strand at 81.261 kb on + strand at 81.261 kb on + strand at 81.261 kb on + strand at 81.261 kb on + strand at 81.269 kb on - strand at 81.269 kb on - strand at 81.269 kb on - strand at 81.269 kb on - strand at 81.269 kb on - strand at 81.269 kb on - strand at 81.269 kb on - strand at 81.269 kb on - strand at 81.269 kb on - strand at 81.269 kb on - strand at 81.269 kb on - strand at 81.294 kb on - strand at 81.429 kb on - strand at 81.431 kb on - strand at 81.433 kb on + strand at 81.433 kb on + strand at 81.441 kb on - strand at 81.489 kb on + strand, within MPMX20_00081 at 81.535 kb on + strand, within MPMX20_00081 at 81.553 kb on + strand, within MPMX20_00081 at 81.637 kb on - strand, within MPMX20_00081 at 81.704 kb on - strand, within MPMX20_00081 at 81.711 kb on - strand, within MPMX20_00081 at 81.722 kb on + strand, within MPMX20_00081 at 81.725 kb on - strand, within MPMX20_00081 at 81.738 kb on - strand, within MPMX20_00081 at 81.876 kb on + strand, within MPMX20_00081 at 81.930 kb on + strand, within MPMX20_00081 at 81.930 kb on + strand, within MPMX20_00081 at 81.938 kb on - strand, within MPMX20_00081 at 81.938 kb on - strand, within MPMX20_00081 at 81.943 kb on - strand, within MPMX20_00081 at 82.001 kb on - strand, within MPMX20_00081 at 82.102 kb on - strand, within MPMX20_00081 at 82.134 kb on - strand, within MPMX20_00081 at 82.150 kb on - strand, within MPMX20_00081 at 82.172 kb on + strand, within MPMX20_00081 at 82.172 kb on + strand, within MPMX20_00081 at 82.187 kb on + strand, within MPMX20_00081 at 82.187 kb on + strand, within MPMX20_00081 at 82.215 kb on + strand, within MPMX20_00081 at 82.232 kb on - strand, within MPMX20_00081 at 82.244 kb on + strand, within MPMX20_00081 at 82.278 kb on + strand, within MPMX20_00081 at 82.278 kb on + strand, within MPMX20_00081 at 82.278 kb on + strand, within MPMX20_00081 at 82.286 kb on - strand, within MPMX20_00081 at 82.301 kb on + strand, within MPMX20_00081 at 82.322 kb on + strand, within MPMX20_00081 at 82.369 kb on + strand, within MPMX20_00081 at 82.379 kb on + strand, within MPMX20_00081 at 82.382 kb on - strand, within MPMX20_00081 at 82.387 kb on - strand, within MPMX20_00081 at 82.451 kb on + strand, within MPMX20_00081 at 82.454 kb on - strand, within MPMX20_00081 at 82.456 kb on + strand, within MPMX20_00081 at 82.493 kb on + strand, within MPMX20_00081 at 82.493 kb on + strand, within MPMX20_00081 at 82.493 kb on + strand, within MPMX20_00081 at 82.493 kb on + strand, within MPMX20_00081 at 82.493 kb on + strand, within MPMX20_00081 at 82.501 kb on - strand, within MPMX20_00081 at 82.502 kb on + strand, within MPMX20_00081 at 82.536 kb on - strand, within MPMX20_00081 at 82.546 kb on - strand, within MPMX20_00081 at 82.573 kb on - strand, within MPMX20_00081 at 82.591 kb on - strand, within MPMX20_00081 at 82.617 kb on - strand, within MPMX20_00081 at 82.620 kb on + strand, within MPMX20_00081 at 82.628 kb on - strand, within MPMX20_00081 at 82.628 kb on - strand, within MPMX20_00081 at 82.628 kb on - strand, within MPMX20_00081 at 82.654 kb on + strand, within MPMX20_00081 at 82.662 kb on - strand, within MPMX20_00081 at 82.670 kb on + strand, within MPMX20_00081 at 82.696 kb on - strand, within MPMX20_00081 at 82.699 kb on + strand, within MPMX20_00081 at 82.709 kb on + strand, within MPMX20_00081 at 82.709 kb on + strand, within MPMX20_00081 at 82.709 kb on + strand, within MPMX20_00081 at 82.709 kb on + strand, within MPMX20_00081 at 82.709 kb on + strand, within MPMX20_00081 at 82.709 kb on + strand, within MPMX20_00081 at 82.709 kb on + strand, within MPMX20_00081 at 82.709 kb on + strand, within MPMX20_00081 at 82.709 kb on + strand, within MPMX20_00081 at 82.709 kb on + strand, within MPMX20_00081 at 82.709 kb on + strand, within MPMX20_00081 at 82.709 kb on + strand, within MPMX20_00081 at 82.709 kb on + strand, within MPMX20_00081 at 82.709 kb on + strand, within MPMX20_00081 at 82.709 kb on + strand, within MPMX20_00081 at 82.709 kb on + strand, within MPMX20_00081 at 82.709 kb on + strand, within MPMX20_00081 at 82.709 kb on + strand, within MPMX20_00081 at 82.709 kb on + strand, within MPMX20_00081 at 82.709 kb on + strand, within MPMX20_00081 at 82.709 kb on + strand, within MPMX20_00081 at 82.709 kb on + strand, within MPMX20_00081 at 82.717 kb on - strand, within MPMX20_00081 at 82.717 kb on - strand, within MPMX20_00081 at 82.717 kb on - strand, within MPMX20_00081 at 82.717 kb on - strand, within MPMX20_00081 at 82.717 kb on - strand, within MPMX20_00081 at 82.717 kb on - strand, within MPMX20_00081 at 82.717 kb on - strand, within MPMX20_00081 at 82.717 kb on - strand, within MPMX20_00081 at 82.717 kb on - strand, within MPMX20_00081 at 82.717 kb on - strand, within MPMX20_00081 at 82.717 kb on - strand, within MPMX20_00081 at 82.717 kb on - strand, within MPMX20_00081 at 82.717 kb on - strand, within MPMX20_00081 at 82.717 kb on - strand, within MPMX20_00081 at 82.717 kb on - strand, within MPMX20_00081 at 82.717 kb on - strand, within MPMX20_00081 at 82.742 kb on + strand, within MPMX20_00081 at 82.750 kb on - strand, within MPMX20_00081 at 82.752 kb on + strand, within MPMX20_00081 at 82.786 kb on - strand, within MPMX20_00081 at 82.841 kb on - strand, within MPMX20_00081 at 82.869 kb on + strand at 82.896 kb on - strand at 82.968 kb on + strand at 82.979 kb on + strand at 82.987 kb on - strand at 83.019 kb on + strand at 83.019 kb on + strand at 83.053 kb on - strand at 83.064 kb on - strand at 83.079 kb on - strand at 83.094 kb on - strand at 83.170 kb on - strand at 83.191 kb on + strand at 83.269 kb on + strand at 83.287 kb on + strand, within MPMX20_00082 at 83.287 kb on + strand, within MPMX20_00082 at 83.320 kb on - strand, within MPMX20_00082 at 83.328 kb on - strand, within MPMX20_00082 at 83.358 kb on + strand, within MPMX20_00082 at 83.358 kb on + strand, within MPMX20_00082 at 83.366 kb on - strand, within MPMX20_00082 at 83.374 kb on + strand, within MPMX20_00082 at 83.379 kb on + strand, within MPMX20_00082 at 83.392 kb on - strand, within MPMX20_00082 at 83.392 kb on - strand, within MPMX20_00082 at 83.397 kb on - strand, within MPMX20_00082 at 83.397 kb on - strand, within MPMX20_00082 at 83.400 kb on + strand, within MPMX20_00082 at 83.403 kb on - strand, within MPMX20_00082 at 83.408 kb on - strand, within MPMX20_00082 at 83.408 kb on - strand, within MPMX20_00082 at 83.408 kb on - strand, within MPMX20_00082 at 83.408 kb on - strand, within MPMX20_00082 at 83.408 kb on - strand, within MPMX20_00082 at 83.408 kb on - strand, within MPMX20_00082 at 83.427 kb on + strand, within MPMX20_00082 at 83.427 kb on + strand, within MPMX20_00082 at 83.435 kb on - strand, within MPMX20_00082 at 83.511 kb on - strand, within MPMX20_00082 at 83.519 kb on - strand, within MPMX20_00082 at 83.524 kb on - strand, within MPMX20_00082 at 83.544 kb on + strand, within MPMX20_00082 at 83.552 kb on - strand, within MPMX20_00082 at 83.552 kb on - strand, within MPMX20_00082 at 83.552 kb on - strand, within MPMX20_00082 at 83.554 kb on + strand, within MPMX20_00082 at 83.607 kb on + strand, within MPMX20_00082 at 83.652 kb on - strand, within MPMX20_00082 at 83.652 kb on - strand, within MPMX20_00082 at 83.727 kb on + strand, within MPMX20_00082 at 83.732 kb on + strand, within MPMX20_00082 at 83.739 kb on + strand, within MPMX20_00082 at 83.745 kb on - strand, within MPMX20_00082 at 83.775 kb on + strand, within MPMX20_00082 at 83.775 kb on + strand, within MPMX20_00082 at 83.775 kb on + strand, within MPMX20_00082 at 83.783 kb on - strand, within MPMX20_00082 at 83.783 kb on - strand, within MPMX20_00082 at 83.814 kb on + strand, within MPMX20_00082 at 83.814 kb on + strand, within MPMX20_00082 at 83.990 kb on + strand, within MPMX20_00082 at 83.990 kb on + strand, within MPMX20_00082
Per-strain Table
Position Strand Gene LocusTag Fraction M9 plate, Mixed culture; Bacillus pumilus TBS_104 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct remove 80,352 - MPMX20_00080 0.61 -1.6 80,354 - MPMX20_00080 0.61 -1.3 80,397 - MPMX20_00080 0.63 -3.0 80,458 + MPMX20_00080 0.66 -0.5 80,595 - MPMX20_00080 0.72 -1.8 80,609 - MPMX20_00080 0.72 -1.2 80,624 + MPMX20_00080 0.73 +0.2 80,624 + MPMX20_00080 0.73 +2.4 80,654 + MPMX20_00080 0.74 +0.5 80,664 + MPMX20_00080 0.75 +2.5 80,664 + MPMX20_00080 0.75 -1.9 80,664 + MPMX20_00080 0.75 +1.5 80,664 + MPMX20_00080 0.75 -0.0 80,664 + MPMX20_00080 0.75 +1.6 80,664 + MPMX20_00080 0.75 -0.5 80,678 + MPMX20_00080 0.75 +1.3 80,678 + MPMX20_00080 0.75 -1.1 80,696 - MPMX20_00080 0.76 +0.1 80,789 - MPMX20_00080 0.80 -0.2 80,798 + MPMX20_00080 0.80 -2.0 80,844 - MPMX20_00080 0.82 -1.9 80,878 + MPMX20_00080 0.84 -1.0 80,924 + MPMX20_00080 0.86 -0.0 80,957 + MPMX20_00080 0.87 -0.5 81,078 + +0.6 81,078 + -3.1 81,193 + -1.6 81,220 - +0.0 81,224 + +0.4 81,233 - -3.1 81,234 - -0.5 81,245 + +1.7 81,261 + -1.8 81,261 + +3.4 81,261 + +2.0 81,261 + +0.3 81,261 + +2.5 81,269 - -0.7 81,269 - -0.9 81,269 - -0.0 81,269 - +2.5 81,269 - -0.5 81,269 - -1.5 81,269 - -0.1 81,269 - +0.5 81,269 - +0.6 81,269 - -2.4 81,269 - -0.8 81,294 - +0.6 81,429 - +5.1 81,431 - +2.5 81,433 + +0.2 81,433 + -1.3 81,441 - +1.0 81,489 + MPMX20_00081 0.10 +1.1 81,535 + MPMX20_00081 0.13 +3.7 81,553 + MPMX20_00081 0.14 +0.4 81,637 - MPMX20_00081 0.19 -3.3 81,704 - MPMX20_00081 0.23 -1.9 81,711 - MPMX20_00081 0.23 -0.8 81,722 + MPMX20_00081 0.24 -0.2 81,725 - MPMX20_00081 0.24 -0.6 81,738 - MPMX20_00081 0.25 -1.3 81,876 + MPMX20_00081 0.33 -1.3 81,930 + MPMX20_00081 0.36 -0.4 81,930 + MPMX20_00081 0.36 -2.8 81,938 - MPMX20_00081 0.37 +0.5 81,938 - MPMX20_00081 0.37 +0.5 81,943 - MPMX20_00081 0.37 +0.5 82,001 - MPMX20_00081 0.40 +1.2 82,102 - MPMX20_00081 0.46 -2.2 82,134 - MPMX20_00081 0.48 -2.7 82,150 - MPMX20_00081 0.49 -1.7 82,172 + MPMX20_00081 0.50 +1.1 82,172 + MPMX20_00081 0.50 -1.9 82,187 + MPMX20_00081 0.51 +1.9 82,187 + MPMX20_00081 0.51 +2.2 82,215 + MPMX20_00081 0.53 -1.2 82,232 - MPMX20_00081 0.54 +2.0 82,244 + MPMX20_00081 0.55 -0.8 82,278 + MPMX20_00081 0.57 +1.1 82,278 + MPMX20_00081 0.57 -2.6 82,278 + MPMX20_00081 0.57 +0.7 82,286 - MPMX20_00081 0.57 -1.0 82,301 + MPMX20_00081 0.58 +1.2 82,322 + MPMX20_00081 0.59 +1.1 82,369 + MPMX20_00081 0.62 +0.5 82,379 + MPMX20_00081 0.63 -1.6 82,382 - MPMX20_00081 0.63 -0.0 82,387 - MPMX20_00081 0.63 -2.8 82,451 + MPMX20_00081 0.67 -1.0 82,454 - MPMX20_00081 0.67 -0.9 82,456 + MPMX20_00081 0.67 -0.6 82,493 + MPMX20_00081 0.69 +0.3 82,493 + MPMX20_00081 0.69 -2.3 82,493 + MPMX20_00081 0.69 +1.0 82,493 + MPMX20_00081 0.69 +1.9 82,493 + MPMX20_00081 0.69 +0.8 82,501 - MPMX20_00081 0.70 +1.2 82,502 + MPMX20_00081 0.70 +1.4 82,536 - MPMX20_00081 0.72 +0.5 82,546 - MPMX20_00081 0.72 +1.3 82,573 - MPMX20_00081 0.74 +0.1 82,591 - MPMX20_00081 0.75 -0.7 82,617 - MPMX20_00081 0.77 +1.5 82,620 + MPMX20_00081 0.77 +1.5 82,628 - MPMX20_00081 0.77 -0.5 82,628 - MPMX20_00081 0.77 -2.7 82,628 - MPMX20_00081 0.77 -0.7 82,654 + MPMX20_00081 0.79 -1.3 82,662 - MPMX20_00081 0.79 -0.3 82,670 + MPMX20_00081 0.80 +0.4 82,696 - MPMX20_00081 0.81 +1.2 82,699 + MPMX20_00081 0.81 -0.8 82,709 + MPMX20_00081 0.82 -3.5 82,709 + MPMX20_00081 0.82 -2.7 82,709 + MPMX20_00081 0.82 +0.4 82,709 + MPMX20_00081 0.82 -0.5 82,709 + MPMX20_00081 0.82 +0.9 82,709 + MPMX20_00081 0.82 +5.0 82,709 + MPMX20_00081 0.82 +1.1 82,709 + MPMX20_00081 0.82 -1.0 82,709 + MPMX20_00081 0.82 -0.8 82,709 + MPMX20_00081 0.82 +0.3 82,709 + MPMX20_00081 0.82 -1.9 82,709 + MPMX20_00081 0.82 -1.0 82,709 + MPMX20_00081 0.82 -1.6 82,709 + MPMX20_00081 0.82 +1.7 82,709 + MPMX20_00081 0.82 +1.5 82,709 + MPMX20_00081 0.82 +0.5 82,709 + MPMX20_00081 0.82 +1.4 82,709 + MPMX20_00081 0.82 -2.2 82,709 + MPMX20_00081 0.82 +0.2 82,709 + MPMX20_00081 0.82 -2.0 82,709 + MPMX20_00081 0.82 -0.5 82,709 + MPMX20_00081 0.82 +0.8 82,717 - MPMX20_00081 0.82 -1.9 82,717 - MPMX20_00081 0.82 -3.7 82,717 - MPMX20_00081 0.82 -1.2 82,717 - MPMX20_00081 0.82 -0.1 82,717 - MPMX20_00081 0.82 +1.5 82,717 - MPMX20_00081 0.82 -0.1 82,717 - MPMX20_00081 0.82 -2.2 82,717 - MPMX20_00081 0.82 -3.7 82,717 - MPMX20_00081 0.82 +1.0 82,717 - MPMX20_00081 0.82 +1.2 82,717 - MPMX20_00081 0.82 -1.5 82,717 - MPMX20_00081 0.82 -2.4 82,717 - MPMX20_00081 0.82 +1.1 82,717 - MPMX20_00081 0.82 -0.0 82,717 - MPMX20_00081 0.82 +1.5 82,717 - MPMX20_00081 0.82 -0.3 82,742 + MPMX20_00081 0.84 +1.5 82,750 - MPMX20_00081 0.84 -1.5 82,752 + MPMX20_00081 0.85 +0.6 82,786 - MPMX20_00081 0.87 +0.3 82,841 - MPMX20_00081 0.90 -0.0 82,869 + +1.8 82,896 - -0.0 82,968 + +0.1 82,979 + -0.8 82,987 - -0.3 83,019 + +0.2 83,019 + +1.4 83,053 - +3.9 83,064 - -0.8 83,079 - -1.5 83,094 - +1.4 83,170 - -1.3 83,191 + -0.0 83,269 + +0.7 83,287 + MPMX20_00082 0.11 -1.5 83,287 + MPMX20_00082 0.11 +0.9 83,320 - MPMX20_00082 0.13 -0.5 83,328 - MPMX20_00082 0.14 -1.5 83,358 + MPMX20_00082 0.16 +0.5 83,358 + MPMX20_00082 0.16 +1.5 83,366 - MPMX20_00082 0.17 -3.3 83,374 + MPMX20_00082 0.17 +0.4 83,379 + MPMX20_00082 0.18 -2.4 83,392 - MPMX20_00082 0.18 -2.7 83,392 - MPMX20_00082 0.18 +0.6 83,397 - MPMX20_00082 0.19 -3.0 83,397 - MPMX20_00082 0.19 -3.4 83,400 + MPMX20_00082 0.19 -1.9 83,403 - MPMX20_00082 0.19 -1.0 83,408 - MPMX20_00082 0.20 -3.5 83,408 - MPMX20_00082 0.20 +0.5 83,408 - MPMX20_00082 0.20 -0.9 83,408 - MPMX20_00082 0.20 -0.5 83,408 - MPMX20_00082 0.20 +0.4 83,408 - MPMX20_00082 0.20 -1.3 83,427 + MPMX20_00082 0.21 -3.0 83,427 + MPMX20_00082 0.21 -1.0 83,435 - MPMX20_00082 0.22 +0.9 83,511 - MPMX20_00082 0.27 -2.3 83,519 - MPMX20_00082 0.28 +1.3 83,524 - MPMX20_00082 0.28 +1.2 83,544 + MPMX20_00082 0.29 +0.2 83,552 - MPMX20_00082 0.30 -0.1 83,552 - MPMX20_00082 0.30 +1.1 83,552 - MPMX20_00082 0.30 -0.2 83,554 + MPMX20_00082 0.30 +0.8 83,607 + MPMX20_00082 0.34 +1.5 83,652 - MPMX20_00082 0.37 -0.3 83,652 - MPMX20_00082 0.37 +3.1 83,727 + MPMX20_00082 0.43 +0.5 83,732 + MPMX20_00082 0.43 -3.8 83,739 + MPMX20_00082 0.43 -0.8 83,745 - MPMX20_00082 0.44 -1.0 83,775 + MPMX20_00082 0.46 +0.5 83,775 + MPMX20_00082 0.46 -0.4 83,775 + MPMX20_00082 0.46 +1.6 83,783 - MPMX20_00082 0.47 +1.0 83,783 - MPMX20_00082 0.47 -0.8 83,814 + MPMX20_00082 0.49 +0.3 83,814 + MPMX20_00082 0.49 +1.1 83,990 + MPMX20_00082 0.61 +0.0 83,990 + MPMX20_00082 0.61 +2.0
Or see this region's nucleotide sequence