Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04202

Experiment: 1X LB plate, Mixed culture; Bacillus pumilus TBS_104 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_04199 and MPMX20_04200 are separated by 57 nucleotidesMPMX20_04200 and MPMX20_04201 are separated by 2 nucleotidesMPMX20_04201 and MPMX20_04202 are separated by 107 nucleotidesMPMX20_04202 and MPMX20_04203 are separated by 40 nucleotides MPMX20_04199: MPMX20_04199 - Alternative ribosome-rescue factor A, at 4,401,175 to 4,401,390 _04199 MPMX20_04200: MPMX20_04200 - HTH-type transcriptional regulator ZntR, at 4,401,448 to 4,401,870 _04200 MPMX20_04201: MPMX20_04201 - hypothetical protein, at 4,401,873 to 4,402,241 _04201 MPMX20_04202: MPMX20_04202 - 50S ribosomal protein L17, at 4,402,349 to 4,402,735 _04202 MPMX20_04203: MPMX20_04203 - DNA-directed RNA polymerase subunit alpha, at 4,402,776 to 4,403,765 _04203 Position (kb) 4402 4403Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 4401.352 kb on + strand, within MPMX20_04199at 4401.360 kb on - strand, within MPMX20_04199at 4401.360 kb on - strand, within MPMX20_04199at 4401.360 kb on - strand, within MPMX20_04199at 4401.360 kb on - strand, within MPMX20_04199at 4401.360 kb on - strand, within MPMX20_04199at 4401.360 kb on - strand, within MPMX20_04199at 4401.366 kb on - strand, within MPMX20_04199at 4401.376 kb on - strandat 4401.376 kb on - strandat 4401.409 kb on - strandat 4401.414 kb on + strandat 4401.416 kb on - strandat 4401.416 kb on - strandat 4401.422 kb on - strandat 4401.424 kb on + strandat 4401.432 kb on - strandat 4401.432 kb on - strandat 4401.454 kb on + strandat 4401.454 kb on + strandat 4401.459 kb on + strandat 4401.459 kb on + strandat 4401.462 kb on - strandat 4401.462 kb on - strandat 4401.462 kb on - strandat 4401.464 kb on + strandat 4401.467 kb on - strandat 4401.472 kb on - strandat 4401.477 kb on + strandat 4401.477 kb on + strandat 4401.477 kb on + strandat 4401.477 kb on + strandat 4401.477 kb on + strandat 4401.477 kb on + strandat 4401.477 kb on + strandat 4401.483 kb on - strandat 4401.483 kb on - strandat 4401.485 kb on - strandat 4401.485 kb on - strandat 4401.485 kb on - strandat 4401.485 kb on - strandat 4401.485 kb on - strandat 4401.511 kb on + strand, within MPMX20_04200at 4401.511 kb on + strand, within MPMX20_04200at 4401.519 kb on - strand, within MPMX20_04200at 4401.519 kb on - strand, within MPMX20_04200at 4401.519 kb on - strand, within MPMX20_04200at 4401.527 kb on - strand, within MPMX20_04200at 4401.537 kb on + strand, within MPMX20_04200at 4401.544 kb on + strand, within MPMX20_04200at 4401.546 kb on - strand, within MPMX20_04200at 4401.574 kb on - strand, within MPMX20_04200at 4401.596 kb on + strand, within MPMX20_04200at 4401.602 kb on + strand, within MPMX20_04200at 4401.602 kb on + strand, within MPMX20_04200at 4401.602 kb on + strand, within MPMX20_04200at 4401.602 kb on + strand, within MPMX20_04200at 4401.610 kb on - strand, within MPMX20_04200at 4401.612 kb on + strand, within MPMX20_04200at 4401.679 kb on + strand, within MPMX20_04200at 4401.716 kb on + strand, within MPMX20_04200at 4401.738 kb on + strand, within MPMX20_04200at 4401.749 kb on + strand, within MPMX20_04200at 4401.757 kb on - strand, within MPMX20_04200at 4401.781 kb on - strand, within MPMX20_04200at 4401.791 kb on - strand, within MPMX20_04200at 4401.822 kb on + strand, within MPMX20_04200at 4401.864 kb on + strandat 4401.873 kb on - strandat 4401.907 kb on - strandat 4401.914 kb on - strand, within MPMX20_04201at 4401.963 kb on + strand, within MPMX20_04201at 4401.968 kb on + strand, within MPMX20_04201at 4402.008 kb on - strand, within MPMX20_04201at 4402.026 kb on - strand, within MPMX20_04201at 4402.058 kb on + strand, within MPMX20_04201at 4402.066 kb on - strand, within MPMX20_04201at 4402.066 kb on - strand, within MPMX20_04201at 4402.144 kb on + strand, within MPMX20_04201

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Per-strain Table

Position Strand Gene LocusTag Fraction 1X LB plate, Mixed culture; Bacillus pumilus TBS_104 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
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4,401,352 + MPMX20_04199 0.82 +0.8
4,401,360 - MPMX20_04199 0.86 +1.3
4,401,360 - MPMX20_04199 0.86 -0.7
4,401,360 - MPMX20_04199 0.86 +0.3
4,401,360 - MPMX20_04199 0.86 -0.2
4,401,360 - MPMX20_04199 0.86 -1.5
4,401,360 - MPMX20_04199 0.86 +0.3
4,401,366 - MPMX20_04199 0.88 +0.3
4,401,376 - +0.3
4,401,376 - -0.4
4,401,409 - -2.7
4,401,414 + +0.8
4,401,416 - -2.5
4,401,416 - -0.2
4,401,422 - +0.9
4,401,424 + +0.7
4,401,432 - -0.6
4,401,432 - -0.4
4,401,454 + +1.9
4,401,454 + -1.8
4,401,459 + -0.4
4,401,459 + -0.5
4,401,462 - +1.9
4,401,462 - +0.0
4,401,462 - +0.1
4,401,464 + -0.1
4,401,467 - -0.2
4,401,472 - -1.3
4,401,477 + +0.5
4,401,477 + +1.9
4,401,477 + +0.7
4,401,477 + -1.6
4,401,477 + -0.5
4,401,477 + +0.9
4,401,477 + +0.5
4,401,483 - -0.2
4,401,483 - +1.3
4,401,485 - +0.1
4,401,485 - +1.3
4,401,485 - +0.5
4,401,485 - -0.5
4,401,485 - +0.4
4,401,511 + MPMX20_04200 0.15 -1.1
4,401,511 + MPMX20_04200 0.15 +0.7
4,401,519 - MPMX20_04200 0.17 -0.3
4,401,519 - MPMX20_04200 0.17 +2.0
4,401,519 - MPMX20_04200 0.17 +0.9
4,401,527 - MPMX20_04200 0.19 -0.4
4,401,537 + MPMX20_04200 0.21 -0.4
4,401,544 + MPMX20_04200 0.23 +1.3
4,401,546 - MPMX20_04200 0.23 +0.2
4,401,574 - MPMX20_04200 0.30 -0.1
4,401,596 + MPMX20_04200 0.35 -1.5
4,401,602 + MPMX20_04200 0.36 +0.9
4,401,602 + MPMX20_04200 0.36 -0.3
4,401,602 + MPMX20_04200 0.36 +0.9
4,401,602 + MPMX20_04200 0.36 +0.3
4,401,610 - MPMX20_04200 0.38 +0.8
4,401,612 + MPMX20_04200 0.39 -0.3
4,401,679 + MPMX20_04200 0.55 +0.2
4,401,716 + MPMX20_04200 0.63 +0.2
4,401,738 + MPMX20_04200 0.69 +1.6
4,401,749 + MPMX20_04200 0.71 +1.6
4,401,757 - MPMX20_04200 0.73 +0.5
4,401,781 - MPMX20_04200 0.79 +0.4
4,401,791 - MPMX20_04200 0.81 +5.6
4,401,822 + MPMX20_04200 0.88 +0.7
4,401,864 + -0.1
4,401,873 - -0.7
4,401,907 - -0.7
4,401,914 - MPMX20_04201 0.11 -1.0
4,401,963 + MPMX20_04201 0.24 -1.4
4,401,968 + MPMX20_04201 0.26 +2.6
4,402,008 - MPMX20_04201 0.37 -0.3
4,402,026 - MPMX20_04201 0.41 +0.4
4,402,058 + MPMX20_04201 0.50 +0.9
4,402,066 - MPMX20_04201 0.52 -1.3
4,402,066 - MPMX20_04201 0.52 +0.5
4,402,144 + MPMX20_04201 0.73 +0.5

Or see this region's nucleotide sequence