Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01859

Experiment: 1X LB plate, Mixed culture; Bacillus pumilus TBS_104 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01857 and MPMX20_01858 overlap by 8 nucleotidesMPMX20_01858 and MPMX20_01859 overlap by 4 nucleotidesMPMX20_01859 and MPMX20_01860 are separated by 73 nucleotidesMPMX20_01860 and MPMX20_01861 overlap by 1 nucleotides MPMX20_01857: MPMX20_01857 - hypothetical protein, at 1,951,136 to 1,951,705 _01857 MPMX20_01858: MPMX20_01858 - Inner membrane protein YnjF, at 1,951,698 to 1,952,315 _01858 MPMX20_01859: MPMX20_01859 - Thiosulfate sulfurtransferase YnjE, at 1,952,312 to 1,953,619 _01859 MPMX20_01860: MPMX20_01860 - Thiamine import ATP-binding protein ThiQ, at 1,953,693 to 1,954,313 _01860 MPMX20_01861: MPMX20_01861 - Inner membrane ABC transporter permease protein YnjC, at 1,954,313 to 1,955,842 _01861 Position (kb) 1952 1953 1954Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1951.438 kb on + strand, within MPMX20_01857at 1951.438 kb on + strand, within MPMX20_01857at 1951.467 kb on - strand, within MPMX20_01857at 1951.496 kb on + strand, within MPMX20_01857at 1951.496 kb on + strand, within MPMX20_01857at 1951.501 kb on + strand, within MPMX20_01857at 1951.501 kb on + strand, within MPMX20_01857at 1951.501 kb on + strand, within MPMX20_01857at 1951.504 kb on - strand, within MPMX20_01857at 1951.507 kb on + strand, within MPMX20_01857at 1951.509 kb on - strand, within MPMX20_01857at 1951.509 kb on - strand, within MPMX20_01857at 1951.509 kb on - strand, within MPMX20_01857at 1951.526 kb on + strand, within MPMX20_01857at 1951.590 kb on - strand, within MPMX20_01857at 1951.636 kb on + strand, within MPMX20_01857at 1951.636 kb on + strand, within MPMX20_01857at 1951.636 kb on + strand, within MPMX20_01857at 1951.636 kb on + strand, within MPMX20_01857at 1951.636 kb on + strand, within MPMX20_01857at 1951.636 kb on + strand, within MPMX20_01857at 1951.644 kb on - strand, within MPMX20_01857at 1951.661 kb on + strandat 1951.724 kb on + strandat 1951.748 kb on + strandat 1951.748 kb on + strandat 1951.750 kb on + strandat 1951.794 kb on - strand, within MPMX20_01858at 1951.794 kb on - strand, within MPMX20_01858at 1951.996 kb on - strand, within MPMX20_01858at 1952.119 kb on - strand, within MPMX20_01858at 1952.146 kb on + strand, within MPMX20_01858at 1952.155 kb on + strand, within MPMX20_01858at 1952.176 kb on + strand, within MPMX20_01858at 1952.190 kb on + strand, within MPMX20_01858at 1952.258 kb on + strandat 1952.273 kb on + strandat 1952.292 kb on + strandat 1952.468 kb on + strand, within MPMX20_01859at 1952.488 kb on - strand, within MPMX20_01859at 1952.498 kb on + strand, within MPMX20_01859at 1952.540 kb on - strand, within MPMX20_01859at 1952.747 kb on - strand, within MPMX20_01859at 1952.760 kb on + strand, within MPMX20_01859at 1952.923 kb on + strand, within MPMX20_01859at 1952.931 kb on - strand, within MPMX20_01859at 1953.120 kb on - strand, within MPMX20_01859at 1953.144 kb on + strand, within MPMX20_01859at 1953.144 kb on + strand, within MPMX20_01859at 1953.144 kb on + strand, within MPMX20_01859at 1953.152 kb on - strand, within MPMX20_01859at 1953.152 kb on - strand, within MPMX20_01859at 1953.190 kb on + strand, within MPMX20_01859at 1953.337 kb on + strand, within MPMX20_01859at 1953.337 kb on + strand, within MPMX20_01859at 1953.360 kb on - strand, within MPMX20_01859at 1953.417 kb on - strand, within MPMX20_01859at 1953.516 kb on + strandat 1953.534 kb on - strandat 1953.558 kb on + strandat 1953.576 kb on - strandat 1953.737 kb on + strandat 1953.751 kb on + strandat 1953.813 kb on - strand, within MPMX20_01860at 1953.873 kb on - strand, within MPMX20_01860at 1954.021 kb on + strand, within MPMX20_01860at 1954.021 kb on + strand, within MPMX20_01860at 1954.075 kb on - strand, within MPMX20_01860at 1954.123 kb on - strand, within MPMX20_01860at 1954.222 kb on + strand, within MPMX20_01860at 1954.227 kb on + strand, within MPMX20_01860at 1954.413 kb on + strandat 1954.415 kb on - strandat 1954.432 kb on + strandat 1954.460 kb on + strandat 1954.497 kb on - strand, within MPMX20_01861

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Per-strain Table

Position Strand Gene LocusTag Fraction 1X LB plate, Mixed culture; Bacillus pumilus TBS_104 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
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1,951,438 + MPMX20_01857 0.53 -0.2
1,951,438 + MPMX20_01857 0.53 -0.7
1,951,467 - MPMX20_01857 0.58 -0.5
1,951,496 + MPMX20_01857 0.63 +0.1
1,951,496 + MPMX20_01857 0.63 +0.3
1,951,501 + MPMX20_01857 0.64 +0.5
1,951,501 + MPMX20_01857 0.64 +0.9
1,951,501 + MPMX20_01857 0.64 -1.6
1,951,504 - MPMX20_01857 0.65 +0.7
1,951,507 + MPMX20_01857 0.65 +0.4
1,951,509 - MPMX20_01857 0.65 -2.3
1,951,509 - MPMX20_01857 0.65 -0.0
1,951,509 - MPMX20_01857 0.65 +0.9
1,951,526 + MPMX20_01857 0.68 -1.3
1,951,590 - MPMX20_01857 0.80 -0.4
1,951,636 + MPMX20_01857 0.88 -1.0
1,951,636 + MPMX20_01857 0.88 -1.6
1,951,636 + MPMX20_01857 0.88 -0.7
1,951,636 + MPMX20_01857 0.88 +0.1
1,951,636 + MPMX20_01857 0.88 -1.4
1,951,636 + MPMX20_01857 0.88 -1.7
1,951,644 - MPMX20_01857 0.89 -0.9
1,951,661 + +1.0
1,951,724 + +0.7
1,951,748 + -1.0
1,951,748 + -0.9
1,951,750 + -0.9
1,951,794 - MPMX20_01858 0.16 -0.7
1,951,794 - MPMX20_01858 0.16 +0.6
1,951,996 - MPMX20_01858 0.48 +1.0
1,952,119 - MPMX20_01858 0.68 -0.1
1,952,146 + MPMX20_01858 0.72 +1.5
1,952,155 + MPMX20_01858 0.74 +0.4
1,952,176 + MPMX20_01858 0.77 +0.3
1,952,190 + MPMX20_01858 0.80 -1.1
1,952,258 + -0.0
1,952,273 + -0.3
1,952,292 + +1.3
1,952,468 + MPMX20_01859 0.12 +0.7
1,952,488 - MPMX20_01859 0.13 -1.4
1,952,498 + MPMX20_01859 0.14 -1.2
1,952,540 - MPMX20_01859 0.17 -0.5
1,952,747 - MPMX20_01859 0.33 -0.6
1,952,760 + MPMX20_01859 0.34 +0.5
1,952,923 + MPMX20_01859 0.47 +0.4
1,952,931 - MPMX20_01859 0.47 -0.8
1,953,120 - MPMX20_01859 0.62 -0.4
1,953,144 + MPMX20_01859 0.64 +0.3
1,953,144 + MPMX20_01859 0.64 -0.7
1,953,144 + MPMX20_01859 0.64 -1.2
1,953,152 - MPMX20_01859 0.64 -0.2
1,953,152 - MPMX20_01859 0.64 +0.1
1,953,190 + MPMX20_01859 0.67 -1.2
1,953,337 + MPMX20_01859 0.78 -2.3
1,953,337 + MPMX20_01859 0.78 -0.3
1,953,360 - MPMX20_01859 0.80 -1.3
1,953,417 - MPMX20_01859 0.84 -1.0
1,953,516 + -0.4
1,953,534 - +0.1
1,953,558 + +1.3
1,953,576 - -0.2
1,953,737 + +1.3
1,953,751 + -0.6
1,953,813 - MPMX20_01860 0.19 -0.8
1,953,873 - MPMX20_01860 0.29 +4.1
1,954,021 + MPMX20_01860 0.53 -0.5
1,954,021 + MPMX20_01860 0.53 +0.4
1,954,075 - MPMX20_01860 0.62 -0.3
1,954,123 - MPMX20_01860 0.69 +0.6
1,954,222 + MPMX20_01860 0.85 -0.6
1,954,227 + MPMX20_01860 0.86 -0.2
1,954,413 + -1.1
1,954,415 - -1.9
1,954,432 + +0.3
1,954,460 + +0.1
1,954,497 - MPMX20_01861 0.12 +1.5

Or see this region's nucleotide sequence