Experiment: 1X LB plate, Mixed culture; Bacillus pumilus TBS_104 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01857 and MPMX20_01858 overlap by 8 nucleotides MPMX20_01858 and MPMX20_01859 overlap by 4 nucleotides MPMX20_01859 and MPMX20_01860 are separated by 73 nucleotides MPMX20_01860 and MPMX20_01861 overlap by 1 nucleotides
MPMX20_01857: MPMX20_01857 - hypothetical protein, at 1,951,136 to 1,951,705
_01857
MPMX20_01858: MPMX20_01858 - Inner membrane protein YnjF, at 1,951,698 to 1,952,315
_01858
MPMX20_01859: MPMX20_01859 - Thiosulfate sulfurtransferase YnjE, at 1,952,312 to 1,953,619
_01859
MPMX20_01860: MPMX20_01860 - Thiamine import ATP-binding protein ThiQ, at 1,953,693 to 1,954,313
_01860
MPMX20_01861: MPMX20_01861 - Inner membrane ABC transporter permease protein YnjC, at 1,954,313 to 1,955,842
_01861
Position (kb)
1952
1953
1954 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 1951.438 kb on + strand, within MPMX20_01857 at 1951.438 kb on + strand, within MPMX20_01857 at 1951.467 kb on - strand, within MPMX20_01857 at 1951.496 kb on + strand, within MPMX20_01857 at 1951.496 kb on + strand, within MPMX20_01857 at 1951.501 kb on + strand, within MPMX20_01857 at 1951.501 kb on + strand, within MPMX20_01857 at 1951.501 kb on + strand, within MPMX20_01857 at 1951.504 kb on - strand, within MPMX20_01857 at 1951.507 kb on + strand, within MPMX20_01857 at 1951.509 kb on - strand, within MPMX20_01857 at 1951.509 kb on - strand, within MPMX20_01857 at 1951.509 kb on - strand, within MPMX20_01857 at 1951.526 kb on + strand, within MPMX20_01857 at 1951.590 kb on - strand, within MPMX20_01857 at 1951.636 kb on + strand, within MPMX20_01857 at 1951.636 kb on + strand, within MPMX20_01857 at 1951.636 kb on + strand, within MPMX20_01857 at 1951.636 kb on + strand, within MPMX20_01857 at 1951.636 kb on + strand, within MPMX20_01857 at 1951.636 kb on + strand, within MPMX20_01857 at 1951.644 kb on - strand, within MPMX20_01857 at 1951.661 kb on + strand at 1951.724 kb on + strand at 1951.748 kb on + strand at 1951.748 kb on + strand at 1951.750 kb on + strand at 1951.794 kb on - strand, within MPMX20_01858 at 1951.794 kb on - strand, within MPMX20_01858 at 1951.996 kb on - strand, within MPMX20_01858 at 1952.119 kb on - strand, within MPMX20_01858 at 1952.146 kb on + strand, within MPMX20_01858 at 1952.155 kb on + strand, within MPMX20_01858 at 1952.176 kb on + strand, within MPMX20_01858 at 1952.190 kb on + strand, within MPMX20_01858 at 1952.258 kb on + strand at 1952.273 kb on + strand at 1952.292 kb on + strand at 1952.468 kb on + strand, within MPMX20_01859 at 1952.488 kb on - strand, within MPMX20_01859 at 1952.498 kb on + strand, within MPMX20_01859 at 1952.540 kb on - strand, within MPMX20_01859 at 1952.747 kb on - strand, within MPMX20_01859 at 1952.760 kb on + strand, within MPMX20_01859 at 1952.923 kb on + strand, within MPMX20_01859 at 1952.931 kb on - strand, within MPMX20_01859 at 1953.120 kb on - strand, within MPMX20_01859 at 1953.144 kb on + strand, within MPMX20_01859 at 1953.144 kb on + strand, within MPMX20_01859 at 1953.144 kb on + strand, within MPMX20_01859 at 1953.152 kb on - strand, within MPMX20_01859 at 1953.152 kb on - strand, within MPMX20_01859 at 1953.190 kb on + strand, within MPMX20_01859 at 1953.337 kb on + strand, within MPMX20_01859 at 1953.337 kb on + strand, within MPMX20_01859 at 1953.360 kb on - strand, within MPMX20_01859 at 1953.417 kb on - strand, within MPMX20_01859 at 1953.516 kb on + strand at 1953.534 kb on - strand at 1953.558 kb on + strand at 1953.576 kb on - strand at 1953.737 kb on + strand at 1953.751 kb on + strand at 1953.813 kb on - strand, within MPMX20_01860 at 1953.873 kb on - strand, within MPMX20_01860 at 1954.021 kb on + strand, within MPMX20_01860 at 1954.021 kb on + strand, within MPMX20_01860 at 1954.075 kb on - strand, within MPMX20_01860 at 1954.123 kb on - strand, within MPMX20_01860 at 1954.222 kb on + strand, within MPMX20_01860 at 1954.227 kb on + strand, within MPMX20_01860 at 1954.413 kb on + strand at 1954.415 kb on - strand at 1954.432 kb on + strand at 1954.460 kb on + strand at 1954.497 kb on - strand, within MPMX20_01861
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, Mixed culture; Bacillus pumilus TBS_104 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct remove 1,951,438 + MPMX20_01857 0.53 -0.2 1,951,438 + MPMX20_01857 0.53 -0.7 1,951,467 - MPMX20_01857 0.58 -0.5 1,951,496 + MPMX20_01857 0.63 +0.1 1,951,496 + MPMX20_01857 0.63 +0.3 1,951,501 + MPMX20_01857 0.64 +0.5 1,951,501 + MPMX20_01857 0.64 +0.9 1,951,501 + MPMX20_01857 0.64 -1.6 1,951,504 - MPMX20_01857 0.65 +0.7 1,951,507 + MPMX20_01857 0.65 +0.4 1,951,509 - MPMX20_01857 0.65 -2.3 1,951,509 - MPMX20_01857 0.65 -0.0 1,951,509 - MPMX20_01857 0.65 +0.9 1,951,526 + MPMX20_01857 0.68 -1.3 1,951,590 - MPMX20_01857 0.80 -0.4 1,951,636 + MPMX20_01857 0.88 -1.0 1,951,636 + MPMX20_01857 0.88 -1.6 1,951,636 + MPMX20_01857 0.88 -0.7 1,951,636 + MPMX20_01857 0.88 +0.1 1,951,636 + MPMX20_01857 0.88 -1.4 1,951,636 + MPMX20_01857 0.88 -1.7 1,951,644 - MPMX20_01857 0.89 -0.9 1,951,661 + +1.0 1,951,724 + +0.7 1,951,748 + -1.0 1,951,748 + -0.9 1,951,750 + -0.9 1,951,794 - MPMX20_01858 0.16 -0.7 1,951,794 - MPMX20_01858 0.16 +0.6 1,951,996 - MPMX20_01858 0.48 +1.0 1,952,119 - MPMX20_01858 0.68 -0.1 1,952,146 + MPMX20_01858 0.72 +1.5 1,952,155 + MPMX20_01858 0.74 +0.4 1,952,176 + MPMX20_01858 0.77 +0.3 1,952,190 + MPMX20_01858 0.80 -1.1 1,952,258 + -0.0 1,952,273 + -0.3 1,952,292 + +1.3 1,952,468 + MPMX20_01859 0.12 +0.7 1,952,488 - MPMX20_01859 0.13 -1.4 1,952,498 + MPMX20_01859 0.14 -1.2 1,952,540 - MPMX20_01859 0.17 -0.5 1,952,747 - MPMX20_01859 0.33 -0.6 1,952,760 + MPMX20_01859 0.34 +0.5 1,952,923 + MPMX20_01859 0.47 +0.4 1,952,931 - MPMX20_01859 0.47 -0.8 1,953,120 - MPMX20_01859 0.62 -0.4 1,953,144 + MPMX20_01859 0.64 +0.3 1,953,144 + MPMX20_01859 0.64 -0.7 1,953,144 + MPMX20_01859 0.64 -1.2 1,953,152 - MPMX20_01859 0.64 -0.2 1,953,152 - MPMX20_01859 0.64 +0.1 1,953,190 + MPMX20_01859 0.67 -1.2 1,953,337 + MPMX20_01859 0.78 -2.3 1,953,337 + MPMX20_01859 0.78 -0.3 1,953,360 - MPMX20_01859 0.80 -1.3 1,953,417 - MPMX20_01859 0.84 -1.0 1,953,516 + -0.4 1,953,534 - +0.1 1,953,558 + +1.3 1,953,576 - -0.2 1,953,737 + +1.3 1,953,751 + -0.6 1,953,813 - MPMX20_01860 0.19 -0.8 1,953,873 - MPMX20_01860 0.29 +4.1 1,954,021 + MPMX20_01860 0.53 -0.5 1,954,021 + MPMX20_01860 0.53 +0.4 1,954,075 - MPMX20_01860 0.62 -0.3 1,954,123 - MPMX20_01860 0.69 +0.6 1,954,222 + MPMX20_01860 0.85 -0.6 1,954,227 + MPMX20_01860 0.86 -0.2 1,954,413 + -1.1 1,954,415 - -1.9 1,954,432 + +0.3 1,954,460 + +0.1 1,954,497 - MPMX20_01861 0.12 +1.5
Or see this region's nucleotide sequence