Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04060

Experiment: 0.1X LB plate, Mixed culture; Bacillus pumilus TBS_103 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_04057 and MPMX20_04058 overlap by 21 nucleotidesMPMX20_04058 and MPMX20_04059 are separated by 14 nucleotidesMPMX20_04059 and MPMX20_04060 overlap by 14 nucleotidesMPMX20_04060 and MPMX20_04061 overlap by 7 nucleotidesMPMX20_04061 and MPMX20_04062 are separated by 211 nucleotides MPMX20_04057: MPMX20_04057 - Protein/nucleic acid deglycase 2, at 4,255,689 to 4,256,207 _04057 MPMX20_04058: MPMX20_04058 - hypothetical protein, at 4,256,187 to 4,256,621 _04058 MPMX20_04059: MPMX20_04059 - hypothetical protein, at 4,256,636 to 4,256,965 _04059 MPMX20_04060: MPMX20_04060 - hypothetical protein, at 4,256,952 to 4,257,455 _04060 MPMX20_04061: MPMX20_04061 - Ubiquinone biosynthesis accessory factor UbiJ, at 4,257,449 to 4,257,973 _04061 MPMX20_04062: MPMX20_04062 - putative protease YhbU, at 4,258,185 to 4,259,180 _04062 Position (kb) 4256 4257 4258Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4255.952 kb on - strand, within MPMX20_04057at 4256.123 kb on + strand, within MPMX20_04057at 4256.229 kb on + strandat 4256.243 kb on - strand, within MPMX20_04058at 4256.266 kb on - strand, within MPMX20_04058at 4256.396 kb on + strand, within MPMX20_04058at 4256.423 kb on - strand, within MPMX20_04058at 4256.442 kb on - strand, within MPMX20_04058at 4256.449 kb on + strand, within MPMX20_04058at 4256.477 kb on - strand, within MPMX20_04058at 4256.549 kb on - strand, within MPMX20_04058at 4256.549 kb on - strand, within MPMX20_04058at 4256.598 kb on + strandat 4256.607 kb on + strandat 4256.631 kb on + strandat 4256.631 kb on + strandat 4256.639 kb on - strandat 4256.639 kb on - strandat 4256.659 kb on - strandat 4256.702 kb on - strand, within MPMX20_04059at 4256.725 kb on - strand, within MPMX20_04059at 4256.781 kb on + strand, within MPMX20_04059at 4256.852 kb on - strand, within MPMX20_04059at 4256.925 kb on + strand, within MPMX20_04059at 4256.925 kb on + strand, within MPMX20_04059at 4256.933 kb on - strandat 4256.981 kb on + strandat 4256.981 kb on + strandat 4256.981 kb on + strandat 4257.169 kb on - strand, within MPMX20_04060at 4257.170 kb on - strand, within MPMX20_04060at 4257.252 kb on - strand, within MPMX20_04060at 4257.254 kb on - strand, within MPMX20_04060at 4257.259 kb on - strand, within MPMX20_04060at 4257.297 kb on + strand, within MPMX20_04060at 4257.297 kb on + strand, within MPMX20_04060at 4257.297 kb on + strand, within MPMX20_04060at 4257.366 kb on - strand, within MPMX20_04060at 4257.376 kb on + strand, within MPMX20_04060at 4257.418 kb on - strandat 4257.447 kb on + strandat 4257.494 kb on + strandat 4257.663 kb on - strand, within MPMX20_04061at 4257.677 kb on + strand, within MPMX20_04061at 4257.707 kb on + strand, within MPMX20_04061at 4257.715 kb on - strand, within MPMX20_04061at 4257.715 kb on - strand, within MPMX20_04061at 4257.715 kb on - strand, within MPMX20_04061at 4257.754 kb on + strand, within MPMX20_04061at 4257.768 kb on - strand, within MPMX20_04061at 4257.775 kb on + strand, within MPMX20_04061at 4257.790 kb on + strand, within MPMX20_04061at 4257.798 kb on - strand, within MPMX20_04061at 4257.798 kb on - strand, within MPMX20_04061at 4257.804 kb on - strand, within MPMX20_04061at 4257.804 kb on - strand, within MPMX20_04061at 4257.833 kb on + strand, within MPMX20_04061at 4257.841 kb on - strand, within MPMX20_04061at 4257.868 kb on - strand, within MPMX20_04061at 4257.880 kb on - strand, within MPMX20_04061at 4257.948 kb on - strandat 4257.992 kb on + strandat 4258.023 kb on + strandat 4258.028 kb on + strandat 4258.053 kb on + strandat 4258.060 kb on + strandat 4258.060 kb on + strandat 4258.061 kb on - strandat 4258.081 kb on + strandat 4258.193 kb on + strandat 4258.193 kb on + strandat 4258.196 kb on - strandat 4258.201 kb on - strandat 4258.201 kb on - strandat 4258.228 kb on - strandat 4258.254 kb on + strandat 4258.301 kb on + strand, within MPMX20_04062at 4258.309 kb on - strand, within MPMX20_04062at 4258.332 kb on + strand, within MPMX20_04062at 4258.338 kb on + strand, within MPMX20_04062at 4258.357 kb on + strand, within MPMX20_04062at 4258.427 kb on + strand, within MPMX20_04062at 4258.427 kb on + strand, within MPMX20_04062at 4258.427 kb on + strand, within MPMX20_04062at 4258.435 kb on - strand, within MPMX20_04062

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Per-strain Table

Position Strand Gene LocusTag Fraction 0.1X LB plate, Mixed culture; Bacillus pumilus TBS_103 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
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4,255,952 - MPMX20_04057 0.51 -1.3
4,256,123 + MPMX20_04057 0.84 -2.4
4,256,229 + -0.3
4,256,243 - MPMX20_04058 0.13 -1.6
4,256,266 - MPMX20_04058 0.18 -1.3
4,256,396 + MPMX20_04058 0.48 -3.2
4,256,423 - MPMX20_04058 0.54 -2.2
4,256,442 - MPMX20_04058 0.59 +1.2
4,256,449 + MPMX20_04058 0.60 -1.6
4,256,477 - MPMX20_04058 0.67 +0.3
4,256,549 - MPMX20_04058 0.83 -0.0
4,256,549 - MPMX20_04058 0.83 +0.3
4,256,598 + -0.7
4,256,607 + +0.1
4,256,631 + -1.2
4,256,631 + -1.3
4,256,639 - +0.8
4,256,639 - -1.8
4,256,659 - +0.6
4,256,702 - MPMX20_04059 0.20 +1.0
4,256,725 - MPMX20_04059 0.27 +0.8
4,256,781 + MPMX20_04059 0.44 +1.4
4,256,852 - MPMX20_04059 0.65 +1.0
4,256,925 + MPMX20_04059 0.88 -0.9
4,256,925 + MPMX20_04059 0.88 -0.9
4,256,933 - -2.9
4,256,981 + -1.6
4,256,981 + +2.2
4,256,981 + +2.4
4,257,169 - MPMX20_04060 0.43 +2.6
4,257,170 - MPMX20_04060 0.43 +3.0
4,257,252 - MPMX20_04060 0.60 +2.1
4,257,254 - MPMX20_04060 0.60 -0.0
4,257,259 - MPMX20_04060 0.61 -1.3
4,257,297 + MPMX20_04060 0.68 +2.8
4,257,297 + MPMX20_04060 0.68 +2.9
4,257,297 + MPMX20_04060 0.68 +3.4
4,257,366 - MPMX20_04060 0.82 +2.6
4,257,376 + MPMX20_04060 0.84 +2.2
4,257,418 - +3.0
4,257,447 + +2.7
4,257,494 + +1.4
4,257,663 - MPMX20_04061 0.41 -0.1
4,257,677 + MPMX20_04061 0.43 -1.0
4,257,707 + MPMX20_04061 0.49 +3.2
4,257,715 - MPMX20_04061 0.51 +0.0
4,257,715 - MPMX20_04061 0.51 -1.6
4,257,715 - MPMX20_04061 0.51 +1.0
4,257,754 + MPMX20_04061 0.58 +0.8
4,257,768 - MPMX20_04061 0.61 -0.9
4,257,775 + MPMX20_04061 0.62 -1.6
4,257,790 + MPMX20_04061 0.65 +0.8
4,257,798 - MPMX20_04061 0.66 +0.2
4,257,798 - MPMX20_04061 0.66 -1.1
4,257,804 - MPMX20_04061 0.68 -0.9
4,257,804 - MPMX20_04061 0.68 +0.5
4,257,833 + MPMX20_04061 0.73 +0.7
4,257,841 - MPMX20_04061 0.75 +0.7
4,257,868 - MPMX20_04061 0.80 -0.4
4,257,880 - MPMX20_04061 0.82 -0.9
4,257,948 - -0.6
4,257,992 + -2.4
4,258,023 + -2.4
4,258,028 + +0.6
4,258,053 + -2.1
4,258,060 + -2.4
4,258,060 + +2.0
4,258,061 - -0.4
4,258,081 + +1.4
4,258,193 + +1.4
4,258,193 + -1.5
4,258,196 - +1.1
4,258,201 - +1.3
4,258,201 - -1.1
4,258,228 - -0.6
4,258,254 + -0.3
4,258,301 + MPMX20_04062 0.12 -0.7
4,258,309 - MPMX20_04062 0.12 -0.8
4,258,332 + MPMX20_04062 0.15 +0.6
4,258,338 + MPMX20_04062 0.15 +1.0
4,258,357 + MPMX20_04062 0.17 -0.9
4,258,427 + MPMX20_04062 0.24 -0.4
4,258,427 + MPMX20_04062 0.24 -0.4
4,258,427 + MPMX20_04062 0.24 -1.3
4,258,435 - MPMX20_04062 0.25 +0.7

Or see this region's nucleotide sequence