Experiment: 0.1X LB plate, Mixed culture; Bacillus pumilus TBS_103 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01652 and MPMX20_01653 are separated by 263 nucleotides MPMX20_01653 and MPMX20_01654 are separated by 12 nucleotides
MPMX20_01652: MPMX20_01652 - hypothetical protein, at 1,750,627 to 1,752,018
_01652
MPMX20_01653: MPMX20_01653 - Phenoxybenzoate dioxygenase subunit beta, at 1,752,282 to 1,753,232
_01653
MPMX20_01654: MPMX20_01654 - Methylxanthine N1-demethylase NdmA, at 1,753,245 to 1,754,279
_01654
Position (kb)
1752
1753
1754 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5
6
7 at 1751.285 kb on - strand, within MPMX20_01652 at 1751.287 kb on - strand, within MPMX20_01652 at 1751.388 kb on + strand, within MPMX20_01652 at 1751.419 kb on + strand, within MPMX20_01652 at 1751.419 kb on + strand, within MPMX20_01652 at 1751.419 kb on + strand, within MPMX20_01652 at 1751.419 kb on + strand, within MPMX20_01652 at 1751.427 kb on - strand, within MPMX20_01652 at 1751.427 kb on - strand, within MPMX20_01652 at 1751.427 kb on - strand, within MPMX20_01652 at 1751.427 kb on - strand, within MPMX20_01652 at 1751.427 kb on - strand, within MPMX20_01652 at 1751.452 kb on - strand, within MPMX20_01652 at 1751.475 kb on + strand, within MPMX20_01652 at 1751.499 kb on + strand, within MPMX20_01652 at 1751.597 kb on - strand, within MPMX20_01652 at 1751.643 kb on + strand, within MPMX20_01652 at 1751.645 kb on + strand, within MPMX20_01652 at 1751.650 kb on - strand, within MPMX20_01652 at 1751.662 kb on + strand, within MPMX20_01652 at 1751.691 kb on - strand, within MPMX20_01652 at 1751.700 kb on + strand, within MPMX20_01652 at 1751.700 kb on + strand, within MPMX20_01652 at 1751.700 kb on - strand, within MPMX20_01652 at 1751.708 kb on - strand, within MPMX20_01652 at 1751.708 kb on - strand, within MPMX20_01652 at 1751.708 kb on - strand, within MPMX20_01652 at 1751.720 kb on + strand, within MPMX20_01652 at 1751.728 kb on - strand, within MPMX20_01652 at 1751.737 kb on + strand, within MPMX20_01652 at 1751.742 kb on + strand, within MPMX20_01652 at 1751.789 kb on + strand, within MPMX20_01652 at 1751.797 kb on - strand, within MPMX20_01652 at 1751.797 kb on - strand, within MPMX20_01652 at 1751.797 kb on - strand, within MPMX20_01652 at 1751.861 kb on + strand, within MPMX20_01652 at 1751.861 kb on + strand, within MPMX20_01652 at 1751.867 kb on - strand, within MPMX20_01652 at 1751.869 kb on - strand, within MPMX20_01652 at 1751.869 kb on - strand, within MPMX20_01652 at 1751.869 kb on - strand, within MPMX20_01652 at 1751.869 kb on - strand, within MPMX20_01652 at 1751.925 kb on + strand at 1751.925 kb on + strand at 1751.925 kb on + strand at 1751.925 kb on + strand at 1751.925 kb on + strand at 1751.925 kb on + strand at 1751.933 kb on - strand at 1751.933 kb on - strand at 1751.933 kb on - strand at 1751.933 kb on - strand at 1752.003 kb on + strand at 1752.011 kb on - strand at 1752.013 kb on + strand at 1752.013 kb on + strand at 1752.013 kb on + strand at 1752.013 kb on + strand at 1752.021 kb on - strand at 1752.021 kb on - strand at 1752.021 kb on - strand at 1752.021 kb on - strand at 1752.035 kb on + strand at 1752.035 kb on + strand at 1752.043 kb on - strand at 1752.043 kb on - strand at 1752.124 kb on - strand at 1752.223 kb on + strand at 1752.234 kb on + strand at 1752.241 kb on - strand at 1752.282 kb on + strand at 1752.305 kb on + strand at 1752.313 kb on - strand at 1752.324 kb on + strand at 1752.336 kb on + strand at 1752.361 kb on + strand at 1752.503 kb on + strand, within MPMX20_01653 at 1752.523 kb on + strand, within MPMX20_01653 at 1752.734 kb on + strand, within MPMX20_01653 at 1752.919 kb on + strand, within MPMX20_01653 at 1752.994 kb on - strand, within MPMX20_01653 at 1753.018 kb on - strand, within MPMX20_01653 at 1753.063 kb on - strand, within MPMX20_01653 at 1753.095 kb on + strand, within MPMX20_01653 at 1753.103 kb on - strand, within MPMX20_01653 at 1753.103 kb on - strand, within MPMX20_01653 at 1753.103 kb on - strand, within MPMX20_01653 at 1753.103 kb on - strand, within MPMX20_01653 at 1753.147 kb on - strand at 1753.163 kb on + strand at 1753.177 kb on + strand at 1753.328 kb on - strand at 1753.328 kb on - strand at 1753.376 kb on - strand, within MPMX20_01654 at 1753.420 kb on + strand, within MPMX20_01654 at 1753.442 kb on + strand, within MPMX20_01654 at 1753.442 kb on + strand, within MPMX20_01654 at 1753.450 kb on - strand, within MPMX20_01654 at 1753.450 kb on - strand, within MPMX20_01654 at 1753.457 kb on + strand, within MPMX20_01654 at 1753.518 kb on - strand, within MPMX20_01654 at 1753.626 kb on + strand, within MPMX20_01654 at 1753.719 kb on - strand, within MPMX20_01654 at 1753.721 kb on + strand, within MPMX20_01654 at 1753.735 kb on + strand, within MPMX20_01654 at 1753.735 kb on + strand, within MPMX20_01654 at 1753.736 kb on - strand, within MPMX20_01654 at 1753.771 kb on + strand, within MPMX20_01654 at 1753.771 kb on + strand, within MPMX20_01654 at 1753.779 kb on - strand, within MPMX20_01654 at 1753.826 kb on + strand, within MPMX20_01654 at 1753.876 kb on - strand, within MPMX20_01654 at 1753.899 kb on + strand, within MPMX20_01654 at 1753.907 kb on - strand, within MPMX20_01654 at 1753.967 kb on + strand, within MPMX20_01654 at 1753.975 kb on - strand, within MPMX20_01654 at 1753.975 kb on - strand, within MPMX20_01654 at 1753.975 kb on - strand, within MPMX20_01654 at 1753.975 kb on - strand, within MPMX20_01654 at 1753.975 kb on - strand, within MPMX20_01654 at 1754.013 kb on + strand, within MPMX20_01654 at 1754.021 kb on - strand, within MPMX20_01654 at 1754.024 kb on + strand, within MPMX20_01654 at 1754.069 kb on + strand, within MPMX20_01654 at 1754.166 kb on - strand, within MPMX20_01654 at 1754.223 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 0.1X LB plate, Mixed culture; Bacillus pumilus TBS_103 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct remove 1,751,285 - MPMX20_01652 0.47 +3.5 1,751,287 - MPMX20_01652 0.47 -0.8 1,751,388 + MPMX20_01652 0.55 -0.0 1,751,419 + MPMX20_01652 0.57 +1.2 1,751,419 + MPMX20_01652 0.57 -2.6 1,751,419 + MPMX20_01652 0.57 -1.4 1,751,419 + MPMX20_01652 0.57 +0.2 1,751,427 - MPMX20_01652 0.57 +4.6 1,751,427 - MPMX20_01652 0.57 -1.6 1,751,427 - MPMX20_01652 0.57 +0.6 1,751,427 - MPMX20_01652 0.57 -0.1 1,751,427 - MPMX20_01652 0.57 -0.4 1,751,452 - MPMX20_01652 0.59 -0.5 1,751,475 + MPMX20_01652 0.61 -2.6 1,751,499 + MPMX20_01652 0.63 +3.1 1,751,597 - MPMX20_01652 0.70 -0.4 1,751,643 + MPMX20_01652 0.73 -0.5 1,751,645 + MPMX20_01652 0.73 -2.9 1,751,650 - MPMX20_01652 0.73 +1.6 1,751,662 + MPMX20_01652 0.74 -0.4 1,751,691 - MPMX20_01652 0.76 +0.8 1,751,700 + MPMX20_01652 0.77 -3.2 1,751,700 + MPMX20_01652 0.77 +0.7 1,751,700 - MPMX20_01652 0.77 -0.1 1,751,708 - MPMX20_01652 0.78 +0.6 1,751,708 - MPMX20_01652 0.78 -1.9 1,751,708 - MPMX20_01652 0.78 -0.3 1,751,720 + MPMX20_01652 0.79 +2.1 1,751,728 - MPMX20_01652 0.79 +1.8 1,751,737 + MPMX20_01652 0.80 -1.9 1,751,742 + MPMX20_01652 0.80 +0.7 1,751,789 + MPMX20_01652 0.83 -0.2 1,751,797 - MPMX20_01652 0.84 +0.9 1,751,797 - MPMX20_01652 0.84 +0.7 1,751,797 - MPMX20_01652 0.84 -0.1 1,751,861 + MPMX20_01652 0.89 -1.3 1,751,861 + MPMX20_01652 0.89 +0.2 1,751,867 - MPMX20_01652 0.89 +0.4 1,751,869 - MPMX20_01652 0.89 +0.8 1,751,869 - MPMX20_01652 0.89 +0.5 1,751,869 - MPMX20_01652 0.89 +0.6 1,751,869 - MPMX20_01652 0.89 +0.1 1,751,925 + +0.1 1,751,925 + -0.3 1,751,925 + +0.5 1,751,925 + +7.7 1,751,925 + +0.7 1,751,925 + -0.0 1,751,933 - +0.4 1,751,933 - +0.2 1,751,933 - -0.3 1,751,933 - -3.1 1,752,003 + -0.3 1,752,011 - +1.5 1,752,013 + +0.8 1,752,013 + +1.1 1,752,013 + -0.6 1,752,013 + -0.4 1,752,021 - -1.3 1,752,021 - +2.7 1,752,021 - +1.3 1,752,021 - +0.7 1,752,035 + -0.4 1,752,035 + -0.5 1,752,043 - +3.7 1,752,043 - -0.2 1,752,124 - -1.0 1,752,223 + +0.5 1,752,234 + -0.4 1,752,241 - -0.2 1,752,282 + +0.9 1,752,305 + +0.4 1,752,313 - -0.8 1,752,324 + +0.4 1,752,336 + -0.3 1,752,361 + +0.2 1,752,503 + MPMX20_01653 0.23 -0.9 1,752,523 + MPMX20_01653 0.25 -0.3 1,752,734 + MPMX20_01653 0.48 -1.3 1,752,919 + MPMX20_01653 0.67 -1.1 1,752,994 - MPMX20_01653 0.75 +0.5 1,753,018 - MPMX20_01653 0.77 -1.1 1,753,063 - MPMX20_01653 0.82 -2.3 1,753,095 + MPMX20_01653 0.85 +0.7 1,753,103 - MPMX20_01653 0.86 -1.0 1,753,103 - MPMX20_01653 0.86 -0.7 1,753,103 - MPMX20_01653 0.86 +0.1 1,753,103 - MPMX20_01653 0.86 -1.2 1,753,147 - -0.3 1,753,163 + +1.9 1,753,177 + +0.6 1,753,328 - +0.4 1,753,328 - +1.3 1,753,376 - MPMX20_01654 0.13 +0.3 1,753,420 + MPMX20_01654 0.17 -0.3 1,753,442 + MPMX20_01654 0.19 +1.3 1,753,442 + MPMX20_01654 0.19 +1.4 1,753,450 - MPMX20_01654 0.20 +0.4 1,753,450 - MPMX20_01654 0.20 -0.1 1,753,457 + MPMX20_01654 0.20 -0.6 1,753,518 - MPMX20_01654 0.26 -0.0 1,753,626 + MPMX20_01654 0.37 +0.5 1,753,719 - MPMX20_01654 0.46 +1.3 1,753,721 + MPMX20_01654 0.46 -2.1 1,753,735 + MPMX20_01654 0.47 +0.3 1,753,735 + MPMX20_01654 0.47 +1.0 1,753,736 - MPMX20_01654 0.47 +0.3 1,753,771 + MPMX20_01654 0.51 +1.1 1,753,771 + MPMX20_01654 0.51 +0.0 1,753,779 - MPMX20_01654 0.52 +2.0 1,753,826 + MPMX20_01654 0.56 +0.0 1,753,876 - MPMX20_01654 0.61 +0.6 1,753,899 + MPMX20_01654 0.63 -1.2 1,753,907 - MPMX20_01654 0.64 -0.1 1,753,967 + MPMX20_01654 0.70 +0.1 1,753,975 - MPMX20_01654 0.71 +0.3 1,753,975 - MPMX20_01654 0.71 -0.4 1,753,975 - MPMX20_01654 0.71 -0.6 1,753,975 - MPMX20_01654 0.71 +0.9 1,753,975 - MPMX20_01654 0.71 +1.1 1,754,013 + MPMX20_01654 0.74 -0.3 1,754,021 - MPMX20_01654 0.75 -2.1 1,754,024 + MPMX20_01654 0.75 +0.8 1,754,069 + MPMX20_01654 0.80 +0.7 1,754,166 - MPMX20_01654 0.89 +0.6 1,754,223 + +0.9
Or see this region's nucleotide sequence