Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03439

Experiment: TSB plate, Mixed culture; Bacillus pumilus TBS_103 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03437 and MPMX20_03438 overlap by 4 nucleotidesMPMX20_03438 and MPMX20_03439 are separated by 183 nucleotidesMPMX20_03439 and MPMX20_03440 are separated by 15 nucleotides MPMX20_03437: MPMX20_03437 - GTPase Era, at 3,624,246 to 3,625,151 _03437 MPMX20_03438: MPMX20_03438 - Ribonuclease 3, at 3,625,148 to 3,625,867 _03438 MPMX20_03439: MPMX20_03439 - Signal peptidase I, at 3,626,051 to 3,627,025 _03439 MPMX20_03440: MPMX20_03440 - Elongation factor 4, at 3,627,041 to 3,628,840 _03440 Position (kb) 3626 3627 3628Strain fitness (log2 ratio) -3 -2 -1 0 1at 3625.928 kb on - strandat 3625.934 kb on - strandat 3625.934 kb on - strandat 3625.934 kb on - strandat 3625.934 kb on - strandat 3626.085 kb on - strandat 3626.085 kb on - strandat 3626.085 kb on - strandat 3626.085 kb on - strandat 3626.108 kb on - strandat 3626.118 kb on - strandat 3626.118 kb on - strandat 3627.069 kb on - strandat 3627.227 kb on - strand, within MPMX20_03440at 3627.369 kb on - strand, within MPMX20_03440at 3627.406 kb on - strand, within MPMX20_03440at 3627.568 kb on + strand, within MPMX20_03440at 3627.574 kb on - strand, within MPMX20_03440at 3627.590 kb on - strand, within MPMX20_03440at 3627.624 kb on - strand, within MPMX20_03440at 3627.624 kb on - strand, within MPMX20_03440at 3627.624 kb on - strand, within MPMX20_03440at 3627.624 kb on - strand, within MPMX20_03440at 3627.742 kb on - strand, within MPMX20_03440at 3627.779 kb on - strand, within MPMX20_03440at 3627.839 kb on - strand, within MPMX20_03440at 3627.933 kb on - strand, within MPMX20_03440at 3627.933 kb on - strand, within MPMX20_03440at 3627.949 kb on - strand, within MPMX20_03440at 3628.024 kb on - strand, within MPMX20_03440

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB plate, Mixed culture; Bacillus pumilus TBS_103 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
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3,625,928 - -0.4
3,625,934 - +1.2
3,625,934 - -0.3
3,625,934 - -1.2
3,625,934 - -2.1
3,626,085 - -0.2
3,626,085 - +0.4
3,626,085 - -0.0
3,626,085 - -0.2
3,626,108 - -1.6
3,626,118 - -1.9
3,626,118 - -1.5
3,627,069 - -0.1
3,627,227 - MPMX20_03440 0.10 -3.5
3,627,369 - MPMX20_03440 0.18 -2.3
3,627,406 - MPMX20_03440 0.20 -0.3
3,627,568 + MPMX20_03440 0.29 +0.7
3,627,574 - MPMX20_03440 0.30 -1.6
3,627,590 - MPMX20_03440 0.30 -1.7
3,627,624 - MPMX20_03440 0.32 -1.5
3,627,624 - MPMX20_03440 0.32 -0.5
3,627,624 - MPMX20_03440 0.32 -0.7
3,627,624 - MPMX20_03440 0.32 +1.3
3,627,742 - MPMX20_03440 0.39 -1.9
3,627,779 - MPMX20_03440 0.41 -2.1
3,627,839 - MPMX20_03440 0.44 -0.3
3,627,933 - MPMX20_03440 0.50 -0.9
3,627,933 - MPMX20_03440 0.50 -2.5
3,627,949 - MPMX20_03440 0.50 -0.3
3,628,024 - MPMX20_03440 0.55 -0.6

Or see this region's nucleotide sequence