Experiment: M9 plate, Mixed culture; Bacillus pumilus TBS_103 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04269 and MPMX20_04270 overlap by 4 nucleotides MPMX20_04270 and MPMX20_04271 are separated by 136 nucleotides
MPMX20_04269: MPMX20_04269 - Nitrite reductase [NAD(P)H], at 4,451,142 to 4,453,685
_04269
MPMX20_04270: MPMX20_04270 - Nitrite reductase (NADH) small subunit, at 4,453,682 to 4,454,008
_04270
MPMX20_04271: MPMX20_04271 - Siroheme synthase, at 4,454,145 to 4,455,518
_04271
Position (kb) 4453
4454
4455 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5
6
7
8
9 at 4452.693 kb on + strand, within MPMX20_04269 at 4452.700 kb on + strand, within MPMX20_04269 at 4452.700 kb on + strand, within MPMX20_04269 at 4452.759 kb on - strand, within MPMX20_04269 at 4452.781 kb on - strand, within MPMX20_04269 at 4452.805 kb on - strand, within MPMX20_04269 at 4452.910 kb on + strand, within MPMX20_04269 at 4452.940 kb on - strand, within MPMX20_04269 at 4452.945 kb on - strand, within MPMX20_04269 at 4453.141 kb on - strand, within MPMX20_04269 at 4453.144 kb on + strand, within MPMX20_04269 at 4453.148 kb on - strand, within MPMX20_04269 at 4453.208 kb on + strand, within MPMX20_04269 at 4453.208 kb on + strand, within MPMX20_04269 at 4453.208 kb on + strand, within MPMX20_04269 at 4453.216 kb on - strand, within MPMX20_04269 at 4453.218 kb on - strand, within MPMX20_04269 at 4453.242 kb on + strand, within MPMX20_04269 at 4453.242 kb on + strand, within MPMX20_04269 at 4453.288 kb on + strand, within MPMX20_04269 at 4453.288 kb on + strand, within MPMX20_04269 at 4453.296 kb on - strand, within MPMX20_04269 at 4453.308 kb on + strand, within MPMX20_04269 at 4453.338 kb on + strand, within MPMX20_04269 at 4453.353 kb on - strand, within MPMX20_04269 at 4453.392 kb on - strand, within MPMX20_04269 at 4453.394 kb on + strand, within MPMX20_04269 at 4453.409 kb on + strand, within MPMX20_04269 at 4453.633 kb on - strand at 4453.692 kb on + strand at 4453.728 kb on + strand, within MPMX20_04270 at 4453.740 kb on + strand, within MPMX20_04270 at 4453.747 kb on + strand, within MPMX20_04270 at 4453.815 kb on - strand, within MPMX20_04270 at 4453.862 kb on + strand, within MPMX20_04270 at 4453.870 kb on + strand, within MPMX20_04270 at 4453.927 kb on + strand, within MPMX20_04270 at 4453.953 kb on - strand, within MPMX20_04270 at 4453.960 kb on + strand, within MPMX20_04270 at 4453.960 kb on + strand, within MPMX20_04270 at 4453.968 kb on - strand, within MPMX20_04270 at 4453.999 kb on - strand at 4454.003 kb on + strand at 4454.003 kb on + strand at 4454.004 kb on - strand at 4454.033 kb on + strand at 4454.041 kb on - strand at 4454.078 kb on + strand at 4454.268 kb on + strand at 4454.276 kb on - strand at 4454.324 kb on + strand, within MPMX20_04271 at 4454.335 kb on + strand, within MPMX20_04271 at 4454.498 kb on - strand, within MPMX20_04271 at 4454.622 kb on - strand, within MPMX20_04271 at 4454.648 kb on - strand, within MPMX20_04271 at 4454.812 kb on - strand, within MPMX20_04271 at 4454.880 kb on + strand, within MPMX20_04271 at 4454.971 kb on - strand, within MPMX20_04271 at 4454.989 kb on - strand, within MPMX20_04271
Per-strain Table
Position Strand Gene LocusTag Fraction M9 plate, Mixed culture; Bacillus pumilus TBS_103 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct remove 4,452,693 + MPMX20_04269 0.61 +2.5 4,452,700 + MPMX20_04269 0.61 -0.2 4,452,700 + MPMX20_04269 0.61 -3.1 4,452,759 - MPMX20_04269 0.64 +1.2 4,452,781 - MPMX20_04269 0.64 +0.2 4,452,805 - MPMX20_04269 0.65 +0.0 4,452,910 + MPMX20_04269 0.69 +0.2 4,452,940 - MPMX20_04269 0.71 -1.4 4,452,945 - MPMX20_04269 0.71 +2.2 4,453,141 - MPMX20_04269 0.79 -0.2 4,453,144 + MPMX20_04269 0.79 -0.2 4,453,148 - MPMX20_04269 0.79 -0.9 4,453,208 + MPMX20_04269 0.81 +0.1 4,453,208 + MPMX20_04269 0.81 -1.6 4,453,208 + MPMX20_04269 0.81 +0.9 4,453,216 - MPMX20_04269 0.82 +0.1 4,453,218 - MPMX20_04269 0.82 +1.4 4,453,242 + MPMX20_04269 0.83 -1.2 4,453,242 + MPMX20_04269 0.83 -1.9 4,453,288 + MPMX20_04269 0.84 +1.4 4,453,288 + MPMX20_04269 0.84 -2.6 4,453,296 - MPMX20_04269 0.85 -0.1 4,453,308 + MPMX20_04269 0.85 -1.4 4,453,338 + MPMX20_04269 0.86 +0.4 4,453,353 - MPMX20_04269 0.87 -0.1 4,453,392 - MPMX20_04269 0.88 -1.1 4,453,394 + MPMX20_04269 0.89 +1.0 4,453,409 + MPMX20_04269 0.89 +1.1 4,453,633 - -2.9 4,453,692 + +0.2 4,453,728 + MPMX20_04270 0.14 -1.2 4,453,740 + MPMX20_04270 0.18 +0.1 4,453,747 + MPMX20_04270 0.20 +1.3 4,453,815 - MPMX20_04270 0.41 -0.2 4,453,862 + MPMX20_04270 0.55 -2.2 4,453,870 + MPMX20_04270 0.57 +1.4 4,453,927 + MPMX20_04270 0.75 +9.3 4,453,953 - MPMX20_04270 0.83 +1.2 4,453,960 + MPMX20_04270 0.85 +0.6 4,453,960 + MPMX20_04270 0.85 -1.6 4,453,968 - MPMX20_04270 0.87 -0.1 4,453,999 - -0.9 4,454,003 + +0.2 4,454,003 + -0.6 4,454,004 - -0.6 4,454,033 + -0.6 4,454,041 - -3.1 4,454,078 + +2.0 4,454,268 + -0.7 4,454,276 - -2.2 4,454,324 + MPMX20_04271 0.13 -1.2 4,454,335 + MPMX20_04271 0.14 -3.9 4,454,498 - MPMX20_04271 0.26 -1.5 4,454,622 - MPMX20_04271 0.35 +3.4 4,454,648 - MPMX20_04271 0.37 +0.4 4,454,812 - MPMX20_04271 0.49 -1.4 4,454,880 + MPMX20_04271 0.53 -1.3 4,454,971 - MPMX20_04271 0.60 -4.0 4,454,989 - MPMX20_04271 0.61 -3.4
Or see this region's nucleotide sequence