Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_02999

Experiment: 1X LB plate, Mixed culture; Bacillus pumilus TBS_103 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_02998 and MPMX20_02999 are separated by 270 nucleotidesMPMX20_02999 and MPMX20_03000 are separated by 41 nucleotides MPMX20_02998: MPMX20_02998 - Low-affinity putrescine importer PlaP, at 3,130,710 to 3,132,068 _02998 MPMX20_02999: MPMX20_02999 - HTH-type transcriptional regulator YhaJ, at 3,132,339 to 3,133,268 _02999 MPMX20_03000: MPMX20_03000 - Protein YeeZ, at 3,133,310 to 3,134,134 _03000 Position (kb) 3132 3133 3134Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3131.355 kb on - strand, within MPMX20_02998at 3131.366 kb on + strand, within MPMX20_02998at 3131.436 kb on + strand, within MPMX20_02998at 3131.607 kb on - strand, within MPMX20_02998at 3131.626 kb on - strand, within MPMX20_02998at 3131.633 kb on + strand, within MPMX20_02998at 3131.660 kb on + strand, within MPMX20_02998at 3131.770 kb on - strand, within MPMX20_02998at 3131.770 kb on - strand, within MPMX20_02998at 3131.825 kb on - strand, within MPMX20_02998at 3131.825 kb on - strand, within MPMX20_02998at 3131.894 kb on + strand, within MPMX20_02998at 3131.901 kb on + strand, within MPMX20_02998at 3131.902 kb on - strand, within MPMX20_02998at 3131.909 kb on - strand, within MPMX20_02998at 3131.909 kb on - strand, within MPMX20_02998at 3131.909 kb on - strand, within MPMX20_02998at 3131.966 kb on - strandat 3131.982 kb on + strandat 3131.982 kb on + strandat 3131.982 kb on + strandat 3132.005 kb on + strandat 3132.045 kb on + strandat 3132.058 kb on - strandat 3132.058 kb on - strandat 3132.078 kb on + strandat 3132.085 kb on + strandat 3132.086 kb on - strandat 3132.086 kb on - strandat 3132.086 kb on - strandat 3132.086 kb on - strandat 3132.300 kb on + strandat 3132.308 kb on - strandat 3132.414 kb on + strandat 3132.424 kb on + strandat 3132.506 kb on + strand, within MPMX20_02999at 3132.545 kb on + strand, within MPMX20_02999at 3132.558 kb on + strand, within MPMX20_02999at 3132.570 kb on + strand, within MPMX20_02999at 3132.597 kb on - strand, within MPMX20_02999at 3132.605 kb on - strand, within MPMX20_02999at 3132.651 kb on + strand, within MPMX20_02999at 3132.659 kb on - strand, within MPMX20_02999at 3132.659 kb on - strand, within MPMX20_02999at 3132.690 kb on + strand, within MPMX20_02999at 3132.707 kb on + strand, within MPMX20_02999at 3132.715 kb on - strand, within MPMX20_02999at 3132.715 kb on - strand, within MPMX20_02999at 3132.715 kb on - strand, within MPMX20_02999at 3132.716 kb on - strand, within MPMX20_02999at 3132.716 kb on - strand, within MPMX20_02999at 3132.716 kb on - strand, within MPMX20_02999at 3132.740 kb on + strand, within MPMX20_02999at 3132.749 kb on - strand, within MPMX20_02999at 3132.754 kb on + strand, within MPMX20_02999at 3132.772 kb on + strand, within MPMX20_02999at 3132.846 kb on + strand, within MPMX20_02999at 3132.851 kb on + strand, within MPMX20_02999at 3132.851 kb on + strand, within MPMX20_02999at 3132.851 kb on + strand, within MPMX20_02999at 3132.851 kb on + strand, within MPMX20_02999at 3132.854 kb on - strand, within MPMX20_02999at 3132.854 kb on - strand, within MPMX20_02999at 3132.859 kb on - strand, within MPMX20_02999at 3132.859 kb on - strand, within MPMX20_02999at 3132.859 kb on - strand, within MPMX20_02999at 3132.936 kb on - strand, within MPMX20_02999at 3132.936 kb on - strand, within MPMX20_02999at 3132.975 kb on + strand, within MPMX20_02999at 3132.984 kb on - strand, within MPMX20_02999at 3133.000 kb on + strand, within MPMX20_02999at 3133.050 kb on - strand, within MPMX20_02999at 3133.054 kb on + strand, within MPMX20_02999at 3133.089 kb on + strand, within MPMX20_02999at 3133.089 kb on + strand, within MPMX20_02999at 3133.097 kb on - strand, within MPMX20_02999at 3133.097 kb on - strand, within MPMX20_02999at 3133.106 kb on + strand, within MPMX20_02999at 3133.159 kb on + strand, within MPMX20_02999at 3133.159 kb on + strand, within MPMX20_02999at 3133.159 kb on + strand, within MPMX20_02999at 3133.159 kb on + strand, within MPMX20_02999at 3133.159 kb on + strand, within MPMX20_02999at 3133.159 kb on + strand, within MPMX20_02999at 3133.167 kb on - strand, within MPMX20_02999at 3133.167 kb on - strand, within MPMX20_02999at 3133.167 kb on - strand, within MPMX20_02999at 3133.167 kb on - strand, within MPMX20_02999at 3133.167 kb on - strand, within MPMX20_02999at 3133.167 kb on - strand, within MPMX20_02999at 3133.167 kb on - strand, within MPMX20_02999at 3133.172 kb on - strand, within MPMX20_02999at 3133.172 kb on - strand, within MPMX20_02999at 3133.172 kb on - strand, within MPMX20_02999at 3133.233 kb on + strandat 3133.261 kb on + strandat 3133.269 kb on - strandat 3133.286 kb on + strandat 3133.490 kb on - strand, within MPMX20_03000at 3133.529 kb on + strand, within MPMX20_03000at 3133.646 kb on + strand, within MPMX20_03000at 3133.669 kb on - strand, within MPMX20_03000at 3133.705 kb on + strand, within MPMX20_03000at 3133.723 kb on - strand, within MPMX20_03000at 3133.768 kb on - strand, within MPMX20_03000at 3133.784 kb on + strand, within MPMX20_03000at 3133.785 kb on + strand, within MPMX20_03000at 3133.829 kb on + strand, within MPMX20_03000at 3133.853 kb on + strand, within MPMX20_03000at 3133.861 kb on - strand, within MPMX20_03000at 3134.009 kb on + strand, within MPMX20_03000at 3134.168 kb on + strandat 3134.169 kb on + strandat 3134.171 kb on - strandat 3134.177 kb on - strandat 3134.177 kb on - strandat 3134.182 kb on + strandat 3134.184 kb on + strandat 3134.184 kb on + strandat 3134.261 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 1X LB plate, Mixed culture; Bacillus pumilus TBS_103 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
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3,131,355 - MPMX20_02998 0.47 -0.2
3,131,366 + MPMX20_02998 0.48 -0.7
3,131,436 + MPMX20_02998 0.53 -1.3
3,131,607 - MPMX20_02998 0.66 +0.8
3,131,626 - MPMX20_02998 0.67 -0.3
3,131,633 + MPMX20_02998 0.68 -0.7
3,131,660 + MPMX20_02998 0.70 -0.3
3,131,770 - MPMX20_02998 0.78 -0.4
3,131,770 - MPMX20_02998 0.78 +2.0
3,131,825 - MPMX20_02998 0.82 -1.0
3,131,825 - MPMX20_02998 0.82 -0.7
3,131,894 + MPMX20_02998 0.87 -0.4
3,131,901 + MPMX20_02998 0.88 +1.2
3,131,902 - MPMX20_02998 0.88 -1.2
3,131,909 - MPMX20_02998 0.88 -2.0
3,131,909 - MPMX20_02998 0.88 -0.3
3,131,909 - MPMX20_02998 0.88 +0.4
3,131,966 - -1.2
3,131,982 + -1.4
3,131,982 + -0.8
3,131,982 + -0.3
3,132,005 + -2.0
3,132,045 + +0.6
3,132,058 - -1.3
3,132,058 - +1.0
3,132,078 + -0.2
3,132,085 + +0.4
3,132,086 - +0.5
3,132,086 - +0.3
3,132,086 - +1.7
3,132,086 - -1.3
3,132,300 + -2.8
3,132,308 - -1.3
3,132,414 + +0.9
3,132,424 + -1.0
3,132,506 + MPMX20_02999 0.18 +0.1
3,132,545 + MPMX20_02999 0.22 -0.7
3,132,558 + MPMX20_02999 0.24 -0.3
3,132,570 + MPMX20_02999 0.25 -0.0
3,132,597 - MPMX20_02999 0.28 -0.5
3,132,605 - MPMX20_02999 0.29 -0.4
3,132,651 + MPMX20_02999 0.34 +2.6
3,132,659 - MPMX20_02999 0.34 -0.2
3,132,659 - MPMX20_02999 0.34 +0.5
3,132,690 + MPMX20_02999 0.38 +0.1
3,132,707 + MPMX20_02999 0.40 +0.7
3,132,715 - MPMX20_02999 0.40 +0.1
3,132,715 - MPMX20_02999 0.40 +0.7
3,132,715 - MPMX20_02999 0.40 +0.2
3,132,716 - MPMX20_02999 0.41 +0.7
3,132,716 - MPMX20_02999 0.41 +0.5
3,132,716 - MPMX20_02999 0.41 -1.0
3,132,740 + MPMX20_02999 0.43 +0.2
3,132,749 - MPMX20_02999 0.44 +1.9
3,132,754 + MPMX20_02999 0.45 +0.3
3,132,772 + MPMX20_02999 0.47 +2.0
3,132,846 + MPMX20_02999 0.55 -0.0
3,132,851 + MPMX20_02999 0.55 +1.0
3,132,851 + MPMX20_02999 0.55 -0.1
3,132,851 + MPMX20_02999 0.55 -0.1
3,132,851 + MPMX20_02999 0.55 +0.0
3,132,854 - MPMX20_02999 0.55 +0.7
3,132,854 - MPMX20_02999 0.55 +0.3
3,132,859 - MPMX20_02999 0.56 -0.9
3,132,859 - MPMX20_02999 0.56 +0.3
3,132,859 - MPMX20_02999 0.56 +0.9
3,132,936 - MPMX20_02999 0.64 +0.0
3,132,936 - MPMX20_02999 0.64 +0.1
3,132,975 + MPMX20_02999 0.68 -0.3
3,132,984 - MPMX20_02999 0.69 +0.9
3,133,000 + MPMX20_02999 0.71 +1.2
3,133,050 - MPMX20_02999 0.76 +1.5
3,133,054 + MPMX20_02999 0.77 -0.0
3,133,089 + MPMX20_02999 0.81 +0.5
3,133,089 + MPMX20_02999 0.81 -0.8
3,133,097 - MPMX20_02999 0.82 +1.8
3,133,097 - MPMX20_02999 0.82 +2.0
3,133,106 + MPMX20_02999 0.82 +0.1
3,133,159 + MPMX20_02999 0.88 +0.7
3,133,159 + MPMX20_02999 0.88 +2.3
3,133,159 + MPMX20_02999 0.88 +0.6
3,133,159 + MPMX20_02999 0.88 -0.9
3,133,159 + MPMX20_02999 0.88 -0.2
3,133,159 + MPMX20_02999 0.88 +0.7
3,133,167 - MPMX20_02999 0.89 +1.1
3,133,167 - MPMX20_02999 0.89 -0.3
3,133,167 - MPMX20_02999 0.89 +0.5
3,133,167 - MPMX20_02999 0.89 +0.5
3,133,167 - MPMX20_02999 0.89 +0.2
3,133,167 - MPMX20_02999 0.89 +1.4
3,133,167 - MPMX20_02999 0.89 -0.8
3,133,172 - MPMX20_02999 0.90 -0.8
3,133,172 - MPMX20_02999 0.90 +0.2
3,133,172 - MPMX20_02999 0.90 +0.9
3,133,233 + +0.0
3,133,261 + -0.3
3,133,269 - +2.2
3,133,286 + +1.8
3,133,490 - MPMX20_03000 0.22 -0.2
3,133,529 + MPMX20_03000 0.27 -0.2
3,133,646 + MPMX20_03000 0.41 +1.3
3,133,669 - MPMX20_03000 0.44 -0.5
3,133,705 + MPMX20_03000 0.48 -0.9
3,133,723 - MPMX20_03000 0.50 +0.4
3,133,768 - MPMX20_03000 0.56 -0.1
3,133,784 + MPMX20_03000 0.57 +1.2
3,133,785 + MPMX20_03000 0.58 +0.3
3,133,829 + MPMX20_03000 0.63 +1.3
3,133,853 + MPMX20_03000 0.66 +0.5
3,133,861 - MPMX20_03000 0.67 -1.9
3,134,009 + MPMX20_03000 0.85 -0.8
3,134,168 + +0.0
3,134,169 + -0.3
3,134,171 - +1.6
3,134,177 - +0.3
3,134,177 - -0.3
3,134,182 + +0.3
3,134,184 + +2.9
3,134,184 + +0.1
3,134,261 + +0.6

Or see this region's nucleotide sequence