Experiment: 1X LB plate, Mixed culture; Bacillus pumilus TBS_103 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02998 and MPMX20_02999 are separated by 270 nucleotides MPMX20_02999 and MPMX20_03000 are separated by 41 nucleotides
MPMX20_02998: MPMX20_02998 - Low-affinity putrescine importer PlaP, at 3,130,710 to 3,132,068
_02998
MPMX20_02999: MPMX20_02999 - HTH-type transcriptional regulator YhaJ, at 3,132,339 to 3,133,268
_02999
MPMX20_03000: MPMX20_03000 - Protein YeeZ, at 3,133,310 to 3,134,134
_03000
Position (kb)
3132
3133
3134 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3131.355 kb on - strand, within MPMX20_02998 at 3131.366 kb on + strand, within MPMX20_02998 at 3131.436 kb on + strand, within MPMX20_02998 at 3131.607 kb on - strand, within MPMX20_02998 at 3131.626 kb on - strand, within MPMX20_02998 at 3131.633 kb on + strand, within MPMX20_02998 at 3131.660 kb on + strand, within MPMX20_02998 at 3131.770 kb on - strand, within MPMX20_02998 at 3131.770 kb on - strand, within MPMX20_02998 at 3131.825 kb on - strand, within MPMX20_02998 at 3131.825 kb on - strand, within MPMX20_02998 at 3131.894 kb on + strand, within MPMX20_02998 at 3131.901 kb on + strand, within MPMX20_02998 at 3131.902 kb on - strand, within MPMX20_02998 at 3131.909 kb on - strand, within MPMX20_02998 at 3131.909 kb on - strand, within MPMX20_02998 at 3131.909 kb on - strand, within MPMX20_02998 at 3131.966 kb on - strand at 3131.982 kb on + strand at 3131.982 kb on + strand at 3131.982 kb on + strand at 3132.005 kb on + strand at 3132.045 kb on + strand at 3132.058 kb on - strand at 3132.058 kb on - strand at 3132.078 kb on + strand at 3132.085 kb on + strand at 3132.086 kb on - strand at 3132.086 kb on - strand at 3132.086 kb on - strand at 3132.086 kb on - strand at 3132.300 kb on + strand at 3132.308 kb on - strand at 3132.414 kb on + strand at 3132.424 kb on + strand at 3132.506 kb on + strand, within MPMX20_02999 at 3132.545 kb on + strand, within MPMX20_02999 at 3132.558 kb on + strand, within MPMX20_02999 at 3132.570 kb on + strand, within MPMX20_02999 at 3132.597 kb on - strand, within MPMX20_02999 at 3132.605 kb on - strand, within MPMX20_02999 at 3132.651 kb on + strand, within MPMX20_02999 at 3132.659 kb on - strand, within MPMX20_02999 at 3132.659 kb on - strand, within MPMX20_02999 at 3132.690 kb on + strand, within MPMX20_02999 at 3132.707 kb on + strand, within MPMX20_02999 at 3132.715 kb on - strand, within MPMX20_02999 at 3132.715 kb on - strand, within MPMX20_02999 at 3132.715 kb on - strand, within MPMX20_02999 at 3132.716 kb on - strand, within MPMX20_02999 at 3132.716 kb on - strand, within MPMX20_02999 at 3132.716 kb on - strand, within MPMX20_02999 at 3132.740 kb on + strand, within MPMX20_02999 at 3132.749 kb on - strand, within MPMX20_02999 at 3132.754 kb on + strand, within MPMX20_02999 at 3132.772 kb on + strand, within MPMX20_02999 at 3132.846 kb on + strand, within MPMX20_02999 at 3132.851 kb on + strand, within MPMX20_02999 at 3132.851 kb on + strand, within MPMX20_02999 at 3132.851 kb on + strand, within MPMX20_02999 at 3132.851 kb on + strand, within MPMX20_02999 at 3132.854 kb on - strand, within MPMX20_02999 at 3132.854 kb on - strand, within MPMX20_02999 at 3132.859 kb on - strand, within MPMX20_02999 at 3132.859 kb on - strand, within MPMX20_02999 at 3132.859 kb on - strand, within MPMX20_02999 at 3132.936 kb on - strand, within MPMX20_02999 at 3132.936 kb on - strand, within MPMX20_02999 at 3132.975 kb on + strand, within MPMX20_02999 at 3132.984 kb on - strand, within MPMX20_02999 at 3133.000 kb on + strand, within MPMX20_02999 at 3133.050 kb on - strand, within MPMX20_02999 at 3133.054 kb on + strand, within MPMX20_02999 at 3133.089 kb on + strand, within MPMX20_02999 at 3133.089 kb on + strand, within MPMX20_02999 at 3133.097 kb on - strand, within MPMX20_02999 at 3133.097 kb on - strand, within MPMX20_02999 at 3133.106 kb on + strand, within MPMX20_02999 at 3133.159 kb on + strand, within MPMX20_02999 at 3133.159 kb on + strand, within MPMX20_02999 at 3133.159 kb on + strand, within MPMX20_02999 at 3133.159 kb on + strand, within MPMX20_02999 at 3133.159 kb on + strand, within MPMX20_02999 at 3133.159 kb on + strand, within MPMX20_02999 at 3133.167 kb on - strand, within MPMX20_02999 at 3133.167 kb on - strand, within MPMX20_02999 at 3133.167 kb on - strand, within MPMX20_02999 at 3133.167 kb on - strand, within MPMX20_02999 at 3133.167 kb on - strand, within MPMX20_02999 at 3133.167 kb on - strand, within MPMX20_02999 at 3133.167 kb on - strand, within MPMX20_02999 at 3133.172 kb on - strand, within MPMX20_02999 at 3133.172 kb on - strand, within MPMX20_02999 at 3133.172 kb on - strand, within MPMX20_02999 at 3133.233 kb on + strand at 3133.261 kb on + strand at 3133.269 kb on - strand at 3133.286 kb on + strand at 3133.490 kb on - strand, within MPMX20_03000 at 3133.529 kb on + strand, within MPMX20_03000 at 3133.646 kb on + strand, within MPMX20_03000 at 3133.669 kb on - strand, within MPMX20_03000 at 3133.705 kb on + strand, within MPMX20_03000 at 3133.723 kb on - strand, within MPMX20_03000 at 3133.768 kb on - strand, within MPMX20_03000 at 3133.784 kb on + strand, within MPMX20_03000 at 3133.785 kb on + strand, within MPMX20_03000 at 3133.829 kb on + strand, within MPMX20_03000 at 3133.853 kb on + strand, within MPMX20_03000 at 3133.861 kb on - strand, within MPMX20_03000 at 3134.009 kb on + strand, within MPMX20_03000 at 3134.168 kb on + strand at 3134.169 kb on + strand at 3134.171 kb on - strand at 3134.177 kb on - strand at 3134.177 kb on - strand at 3134.182 kb on + strand at 3134.184 kb on + strand at 3134.184 kb on + strand at 3134.261 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, Mixed culture; Bacillus pumilus TBS_103 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct remove 3,131,355 - MPMX20_02998 0.47 -0.2 3,131,366 + MPMX20_02998 0.48 -0.7 3,131,436 + MPMX20_02998 0.53 -1.3 3,131,607 - MPMX20_02998 0.66 +0.8 3,131,626 - MPMX20_02998 0.67 -0.3 3,131,633 + MPMX20_02998 0.68 -0.7 3,131,660 + MPMX20_02998 0.70 -0.3 3,131,770 - MPMX20_02998 0.78 -0.4 3,131,770 - MPMX20_02998 0.78 +2.0 3,131,825 - MPMX20_02998 0.82 -1.0 3,131,825 - MPMX20_02998 0.82 -0.7 3,131,894 + MPMX20_02998 0.87 -0.4 3,131,901 + MPMX20_02998 0.88 +1.2 3,131,902 - MPMX20_02998 0.88 -1.2 3,131,909 - MPMX20_02998 0.88 -2.0 3,131,909 - MPMX20_02998 0.88 -0.3 3,131,909 - MPMX20_02998 0.88 +0.4 3,131,966 - -1.2 3,131,982 + -1.4 3,131,982 + -0.8 3,131,982 + -0.3 3,132,005 + -2.0 3,132,045 + +0.6 3,132,058 - -1.3 3,132,058 - +1.0 3,132,078 + -0.2 3,132,085 + +0.4 3,132,086 - +0.5 3,132,086 - +0.3 3,132,086 - +1.7 3,132,086 - -1.3 3,132,300 + -2.8 3,132,308 - -1.3 3,132,414 + +0.9 3,132,424 + -1.0 3,132,506 + MPMX20_02999 0.18 +0.1 3,132,545 + MPMX20_02999 0.22 -0.7 3,132,558 + MPMX20_02999 0.24 -0.3 3,132,570 + MPMX20_02999 0.25 -0.0 3,132,597 - MPMX20_02999 0.28 -0.5 3,132,605 - MPMX20_02999 0.29 -0.4 3,132,651 + MPMX20_02999 0.34 +2.6 3,132,659 - MPMX20_02999 0.34 -0.2 3,132,659 - MPMX20_02999 0.34 +0.5 3,132,690 + MPMX20_02999 0.38 +0.1 3,132,707 + MPMX20_02999 0.40 +0.7 3,132,715 - MPMX20_02999 0.40 +0.1 3,132,715 - MPMX20_02999 0.40 +0.7 3,132,715 - MPMX20_02999 0.40 +0.2 3,132,716 - MPMX20_02999 0.41 +0.7 3,132,716 - MPMX20_02999 0.41 +0.5 3,132,716 - MPMX20_02999 0.41 -1.0 3,132,740 + MPMX20_02999 0.43 +0.2 3,132,749 - MPMX20_02999 0.44 +1.9 3,132,754 + MPMX20_02999 0.45 +0.3 3,132,772 + MPMX20_02999 0.47 +2.0 3,132,846 + MPMX20_02999 0.55 -0.0 3,132,851 + MPMX20_02999 0.55 +1.0 3,132,851 + MPMX20_02999 0.55 -0.1 3,132,851 + MPMX20_02999 0.55 -0.1 3,132,851 + MPMX20_02999 0.55 +0.0 3,132,854 - MPMX20_02999 0.55 +0.7 3,132,854 - MPMX20_02999 0.55 +0.3 3,132,859 - MPMX20_02999 0.56 -0.9 3,132,859 - MPMX20_02999 0.56 +0.3 3,132,859 - MPMX20_02999 0.56 +0.9 3,132,936 - MPMX20_02999 0.64 +0.0 3,132,936 - MPMX20_02999 0.64 +0.1 3,132,975 + MPMX20_02999 0.68 -0.3 3,132,984 - MPMX20_02999 0.69 +0.9 3,133,000 + MPMX20_02999 0.71 +1.2 3,133,050 - MPMX20_02999 0.76 +1.5 3,133,054 + MPMX20_02999 0.77 -0.0 3,133,089 + MPMX20_02999 0.81 +0.5 3,133,089 + MPMX20_02999 0.81 -0.8 3,133,097 - MPMX20_02999 0.82 +1.8 3,133,097 - MPMX20_02999 0.82 +2.0 3,133,106 + MPMX20_02999 0.82 +0.1 3,133,159 + MPMX20_02999 0.88 +0.7 3,133,159 + MPMX20_02999 0.88 +2.3 3,133,159 + MPMX20_02999 0.88 +0.6 3,133,159 + MPMX20_02999 0.88 -0.9 3,133,159 + MPMX20_02999 0.88 -0.2 3,133,159 + MPMX20_02999 0.88 +0.7 3,133,167 - MPMX20_02999 0.89 +1.1 3,133,167 - MPMX20_02999 0.89 -0.3 3,133,167 - MPMX20_02999 0.89 +0.5 3,133,167 - MPMX20_02999 0.89 +0.5 3,133,167 - MPMX20_02999 0.89 +0.2 3,133,167 - MPMX20_02999 0.89 +1.4 3,133,167 - MPMX20_02999 0.89 -0.8 3,133,172 - MPMX20_02999 0.90 -0.8 3,133,172 - MPMX20_02999 0.90 +0.2 3,133,172 - MPMX20_02999 0.90 +0.9 3,133,233 + +0.0 3,133,261 + -0.3 3,133,269 - +2.2 3,133,286 + +1.8 3,133,490 - MPMX20_03000 0.22 -0.2 3,133,529 + MPMX20_03000 0.27 -0.2 3,133,646 + MPMX20_03000 0.41 +1.3 3,133,669 - MPMX20_03000 0.44 -0.5 3,133,705 + MPMX20_03000 0.48 -0.9 3,133,723 - MPMX20_03000 0.50 +0.4 3,133,768 - MPMX20_03000 0.56 -0.1 3,133,784 + MPMX20_03000 0.57 +1.2 3,133,785 + MPMX20_03000 0.58 +0.3 3,133,829 + MPMX20_03000 0.63 +1.3 3,133,853 + MPMX20_03000 0.66 +0.5 3,133,861 - MPMX20_03000 0.67 -1.9 3,134,009 + MPMX20_03000 0.85 -0.8 3,134,168 + +0.0 3,134,169 + -0.3 3,134,171 - +1.6 3,134,177 - +0.3 3,134,177 - -0.3 3,134,182 + +0.3 3,134,184 + +2.9 3,134,184 + +0.1 3,134,261 + +0.6
Or see this region's nucleotide sequence