Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_02355

Experiment: 0.1X LB plate, Mixed culture; Bacillus haynesii TBS_113 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_02354 and MPMX20_02355 are separated by 12 nucleotidesMPMX20_02355 and MPMX20_02356 are separated by 15 nucleotides MPMX20_02354: MPMX20_02354 - hypothetical protein, at 2,482,527 to 2,483,381 _02354 MPMX20_02355: MPMX20_02355 - D-alanyl-D-alanine dipeptidase, at 2,483,394 to 2,483,969 _02355 MPMX20_02356: MPMX20_02356 - putative D,D-dipeptide-binding periplasmic protein DdpA, at 2,483,985 to 2,485,517 _02356 Position (kb) 2483 2484Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6 7 8at 2482.537 kb on + strandat 2482.545 kb on + strandat 2482.553 kb on - strandat 2482.553 kb on - strandat 2482.667 kb on - strand, within MPMX20_02354at 2482.681 kb on + strand, within MPMX20_02354at 2482.763 kb on + strand, within MPMX20_02354at 2482.763 kb on + strand, within MPMX20_02354at 2482.763 kb on + strand, within MPMX20_02354at 2482.763 kb on + strand, within MPMX20_02354at 2482.771 kb on - strand, within MPMX20_02354at 2482.834 kb on + strand, within MPMX20_02354at 2482.885 kb on - strand, within MPMX20_02354at 2483.072 kb on + strand, within MPMX20_02354at 2483.072 kb on + strand, within MPMX20_02354at 2483.072 kb on + strand, within MPMX20_02354at 2483.080 kb on - strand, within MPMX20_02354at 2483.080 kb on - strand, within MPMX20_02354at 2483.080 kb on - strand, within MPMX20_02354at 2483.082 kb on + strand, within MPMX20_02354at 2483.085 kb on - strand, within MPMX20_02354at 2483.085 kb on - strand, within MPMX20_02354at 2483.090 kb on - strand, within MPMX20_02354at 2483.267 kb on - strand, within MPMX20_02354at 2483.300 kb on - strandat 2483.312 kb on - strandat 2483.376 kb on + strandat 2483.384 kb on - strandat 2483.424 kb on + strandat 2483.431 kb on - strandat 2483.469 kb on + strand, within MPMX20_02355at 2483.477 kb on - strand, within MPMX20_02355at 2483.575 kb on + strand, within MPMX20_02355at 2483.621 kb on + strand, within MPMX20_02355at 2483.685 kb on - strand, within MPMX20_02355at 2483.699 kb on + strand, within MPMX20_02355at 2483.707 kb on + strand, within MPMX20_02355at 2483.895 kb on - strand, within MPMX20_02355at 2483.964 kb on + strandat 2483.972 kb on - strandat 2484.030 kb on - strandat 2484.030 kb on - strandat 2484.129 kb on - strandat 2484.146 kb on + strand, within MPMX20_02356at 2484.154 kb on - strand, within MPMX20_02356at 2484.180 kb on + strand, within MPMX20_02356at 2484.184 kb on - strand, within MPMX20_02356at 2484.198 kb on - strand, within MPMX20_02356at 2484.206 kb on - strand, within MPMX20_02356at 2484.217 kb on - strand, within MPMX20_02356at 2484.227 kb on - strand, within MPMX20_02356at 2484.253 kb on + strand, within MPMX20_02356at 2484.253 kb on + strand, within MPMX20_02356at 2484.253 kb on + strand, within MPMX20_02356at 2484.253 kb on + strand, within MPMX20_02356at 2484.253 kb on + strand, within MPMX20_02356at 2484.260 kb on - strand, within MPMX20_02356at 2484.261 kb on - strand, within MPMX20_02356at 2484.261 kb on - strand, within MPMX20_02356at 2484.261 kb on - strand, within MPMX20_02356at 2484.261 kb on - strand, within MPMX20_02356at 2484.261 kb on - strand, within MPMX20_02356at 2484.261 kb on - strand, within MPMX20_02356at 2484.261 kb on - strand, within MPMX20_02356at 2484.261 kb on - strand, within MPMX20_02356at 2484.261 kb on - strand, within MPMX20_02356at 2484.261 kb on - strand, within MPMX20_02356at 2484.322 kb on + strand, within MPMX20_02356at 2484.335 kb on + strand, within MPMX20_02356at 2484.348 kb on - strand, within MPMX20_02356at 2484.363 kb on - strand, within MPMX20_02356at 2484.443 kb on + strand, within MPMX20_02356at 2484.443 kb on + strand, within MPMX20_02356at 2484.443 kb on + strand, within MPMX20_02356at 2484.444 kb on + strand, within MPMX20_02356at 2484.451 kb on - strand, within MPMX20_02356at 2484.451 kb on - strand, within MPMX20_02356at 2484.451 kb on - strand, within MPMX20_02356at 2484.463 kb on - strand, within MPMX20_02356at 2484.498 kb on - strand, within MPMX20_02356at 2484.521 kb on + strand, within MPMX20_02356at 2484.529 kb on - strand, within MPMX20_02356at 2484.590 kb on - strand, within MPMX20_02356at 2484.710 kb on - strand, within MPMX20_02356at 2484.745 kb on - strand, within MPMX20_02356at 2484.802 kb on + strand, within MPMX20_02356at 2484.802 kb on + strand, within MPMX20_02356at 2484.802 kb on + strand, within MPMX20_02356at 2484.818 kb on + strand, within MPMX20_02356at 2484.851 kb on - strand, within MPMX20_02356at 2484.887 kb on + strand, within MPMX20_02356at 2484.928 kb on + strand, within MPMX20_02356at 2484.943 kb on + strand, within MPMX20_02356

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Per-strain Table

Position Strand Gene LocusTag Fraction 0.1X LB plate, Mixed culture; Bacillus haynesii TBS_113 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
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2,482,537 + +0.8
2,482,545 + -0.9
2,482,553 - +0.5
2,482,553 - -0.4
2,482,667 - MPMX20_02354 0.16 +0.6
2,482,681 + MPMX20_02354 0.18 -1.2
2,482,763 + MPMX20_02354 0.28 +0.0
2,482,763 + MPMX20_02354 0.28 -0.2
2,482,763 + MPMX20_02354 0.28 +0.3
2,482,763 + MPMX20_02354 0.28 -0.3
2,482,771 - MPMX20_02354 0.29 +0.1
2,482,834 + MPMX20_02354 0.36 +2.1
2,482,885 - MPMX20_02354 0.42 +0.4
2,483,072 + MPMX20_02354 0.64 -0.8
2,483,072 + MPMX20_02354 0.64 -0.2
2,483,072 + MPMX20_02354 0.64 +1.8
2,483,080 - MPMX20_02354 0.65 -0.4
2,483,080 - MPMX20_02354 0.65 +0.7
2,483,080 - MPMX20_02354 0.65 +0.8
2,483,082 + MPMX20_02354 0.65 -0.4
2,483,085 - MPMX20_02354 0.65 -0.1
2,483,085 - MPMX20_02354 0.65 +2.2
2,483,090 - MPMX20_02354 0.66 +0.2
2,483,267 - MPMX20_02354 0.87 -2.5
2,483,300 - +0.8
2,483,312 - +1.8
2,483,376 + -2.0
2,483,384 - +0.4
2,483,424 + -1.1
2,483,431 - -1.4
2,483,469 + MPMX20_02355 0.13 -0.0
2,483,477 - MPMX20_02355 0.14 -0.0
2,483,575 + MPMX20_02355 0.31 -1.4
2,483,621 + MPMX20_02355 0.39 +1.1
2,483,685 - MPMX20_02355 0.51 -1.6
2,483,699 + MPMX20_02355 0.53 +0.2
2,483,707 + MPMX20_02355 0.54 +8.3
2,483,895 - MPMX20_02355 0.87 +1.7
2,483,964 + -2.0
2,483,972 - +1.2
2,484,030 - -1.4
2,484,030 - +0.2
2,484,129 - +0.2
2,484,146 + MPMX20_02356 0.11 +0.9
2,484,154 - MPMX20_02356 0.11 +0.1
2,484,180 + MPMX20_02356 0.13 -0.0
2,484,184 - MPMX20_02356 0.13 +0.4
2,484,198 - MPMX20_02356 0.14 -0.5
2,484,206 - MPMX20_02356 0.14 -0.5
2,484,217 - MPMX20_02356 0.15 -0.4
2,484,227 - MPMX20_02356 0.16 -0.9
2,484,253 + MPMX20_02356 0.17 -0.0
2,484,253 + MPMX20_02356 0.17 +2.6
2,484,253 + MPMX20_02356 0.17 -0.6
2,484,253 + MPMX20_02356 0.17 -0.7
2,484,253 + MPMX20_02356 0.17 +0.3
2,484,260 - MPMX20_02356 0.18 +0.4
2,484,261 - MPMX20_02356 0.18 +0.3
2,484,261 - MPMX20_02356 0.18 -0.8
2,484,261 - MPMX20_02356 0.18 +0.2
2,484,261 - MPMX20_02356 0.18 +0.3
2,484,261 - MPMX20_02356 0.18 -0.8
2,484,261 - MPMX20_02356 0.18 +0.4
2,484,261 - MPMX20_02356 0.18 +0.6
2,484,261 - MPMX20_02356 0.18 -0.1
2,484,261 - MPMX20_02356 0.18 +0.1
2,484,261 - MPMX20_02356 0.18 +0.4
2,484,322 + MPMX20_02356 0.22 +0.1
2,484,335 + MPMX20_02356 0.23 -0.1
2,484,348 - MPMX20_02356 0.24 +0.3
2,484,363 - MPMX20_02356 0.25 +0.5
2,484,443 + MPMX20_02356 0.30 -0.1
2,484,443 + MPMX20_02356 0.30 -0.2
2,484,443 + MPMX20_02356 0.30 -0.1
2,484,444 + MPMX20_02356 0.30 +1.8
2,484,451 - MPMX20_02356 0.30 +0.4
2,484,451 - MPMX20_02356 0.30 +0.4
2,484,451 - MPMX20_02356 0.30 -0.2
2,484,463 - MPMX20_02356 0.31 -0.9
2,484,498 - MPMX20_02356 0.33 +2.0
2,484,521 + MPMX20_02356 0.35 +0.8
2,484,529 - MPMX20_02356 0.35 +0.5
2,484,590 - MPMX20_02356 0.39 -0.4
2,484,710 - MPMX20_02356 0.47 -1.5
2,484,745 - MPMX20_02356 0.50 +0.2
2,484,802 + MPMX20_02356 0.53 -0.2
2,484,802 + MPMX20_02356 0.53 +0.2
2,484,802 + MPMX20_02356 0.53 +0.4
2,484,818 + MPMX20_02356 0.54 +0.5
2,484,851 - MPMX20_02356 0.56 +0.7
2,484,887 + MPMX20_02356 0.59 -2.5
2,484,928 + MPMX20_02356 0.62 -0.1
2,484,943 + MPMX20_02356 0.62 -0.5

Or see this region's nucleotide sequence