Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01941

Experiment: 0.1X LB plate, Mixed culture; Bacillus haynesii TBS_113 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_01938 and MPMX20_01939 are separated by 29 nucleotidesMPMX20_01939 and MPMX20_01940 are separated by 4 nucleotidesMPMX20_01940 and MPMX20_01941 are separated by 341 nucleotidesMPMX20_01941 and MPMX20_01942 are separated by 188 nucleotides MPMX20_01938: MPMX20_01938 - putative two-component-system connector protein AriR, at 2,035,584 to 2,035,862 _01938 MPMX20_01939: MPMX20_01939 - hypothetical protein, at 2,035,892 to 2,036,212 _01939 MPMX20_01940: MPMX20_01940 - putative two-component-system connector protein YcgZ, at 2,036,217 to 2,036,456 _01940 MPMX20_01941: MPMX20_01941 - Blue light- and temperature-regulated antirepressor BluF, at 2,036,798 to 2,038,018 _01941 MPMX20_01942: MPMX20_01942 - HTH-type transcriptional repressor BluR, at 2,038,207 to 2,038,935 _01942 Position (kb) 2036 2037 2038 2039Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 2035.837 kb on + strandat 2035.837 kb on + strandat 2035.838 kb on - strandat 2035.860 kb on + strandat 2035.865 kb on + strandat 2035.868 kb on - strandat 2035.939 kb on + strand, within MPMX20_01939at 2035.947 kb on - strand, within MPMX20_01939at 2035.947 kb on - strand, within MPMX20_01939at 2035.952 kb on - strand, within MPMX20_01939at 2035.953 kb on + strand, within MPMX20_01939at 2035.968 kb on - strand, within MPMX20_01939at 2035.983 kb on - strand, within MPMX20_01939at 2035.988 kb on + strand, within MPMX20_01939at 2035.988 kb on + strand, within MPMX20_01939at 2035.991 kb on - strand, within MPMX20_01939at 2035.998 kb on + strand, within MPMX20_01939at 2035.998 kb on + strand, within MPMX20_01939at 2036.016 kb on - strand, within MPMX20_01939at 2036.017 kb on - strand, within MPMX20_01939at 2036.126 kb on - strand, within MPMX20_01939at 2036.143 kb on + strand, within MPMX20_01939at 2036.169 kb on + strand, within MPMX20_01939at 2036.192 kb on + strandat 2036.215 kb on - strandat 2036.222 kb on - strandat 2036.248 kb on + strand, within MPMX20_01940at 2036.256 kb on - strand, within MPMX20_01940at 2036.256 kb on - strand, within MPMX20_01940at 2036.272 kb on - strand, within MPMX20_01940at 2036.300 kb on + strand, within MPMX20_01940at 2036.300 kb on - strand, within MPMX20_01940at 2036.308 kb on - strand, within MPMX20_01940at 2036.308 kb on - strand, within MPMX20_01940at 2036.308 kb on - strand, within MPMX20_01940at 2036.361 kb on - strand, within MPMX20_01940at 2036.361 kb on - strand, within MPMX20_01940at 2036.376 kb on - strand, within MPMX20_01940at 2036.407 kb on - strand, within MPMX20_01940at 2036.437 kb on + strandat 2036.437 kb on + strandat 2036.774 kb on + strandat 2036.781 kb on - strandat 2036.781 kb on - strandat 2036.920 kb on + strand, within MPMX20_01941at 2036.947 kb on + strand, within MPMX20_01941at 2036.968 kb on + strand, within MPMX20_01941at 2037.017 kb on - strand, within MPMX20_01941at 2037.017 kb on - strand, within MPMX20_01941at 2037.018 kb on - strand, within MPMX20_01941at 2037.102 kb on + strand, within MPMX20_01941at 2037.227 kb on - strand, within MPMX20_01941at 2037.229 kb on + strand, within MPMX20_01941at 2037.293 kb on - strand, within MPMX20_01941at 2037.371 kb on + strand, within MPMX20_01941at 2037.379 kb on - strand, within MPMX20_01941at 2037.379 kb on - strand, within MPMX20_01941at 2037.398 kb on - strand, within MPMX20_01941at 2037.436 kb on + strand, within MPMX20_01941at 2037.445 kb on - strand, within MPMX20_01941at 2037.467 kb on + strand, within MPMX20_01941at 2037.529 kb on + strand, within MPMX20_01941at 2037.558 kb on - strand, within MPMX20_01941at 2037.664 kb on - strand, within MPMX20_01941at 2037.742 kb on - strand, within MPMX20_01941at 2037.871 kb on + strand, within MPMX20_01941at 2037.871 kb on + strand, within MPMX20_01941at 2037.921 kb on + strandat 2037.921 kb on - strandat 2038.071 kb on + strandat 2038.073 kb on + strandat 2038.097 kb on + strandat 2038.102 kb on - strandat 2038.105 kb on + strandat 2038.105 kb on + strandat 2038.105 kb on + strandat 2038.105 kb on + strandat 2038.105 kb on + strandat 2038.105 kb on + strandat 2038.105 kb on + strandat 2038.105 kb on + strandat 2038.105 kb on + strandat 2038.105 kb on + strandat 2038.105 kb on - strandat 2038.107 kb on - strandat 2038.113 kb on - strandat 2038.113 kb on - strandat 2038.113 kb on - strandat 2038.113 kb on - strandat 2038.113 kb on - strandat 2038.113 kb on - strandat 2038.113 kb on - strandat 2038.113 kb on - strandat 2038.113 kb on - strandat 2038.113 kb on - strandat 2038.113 kb on - strandat 2038.162 kb on + strandat 2038.201 kb on + strandat 2038.210 kb on + strandat 2038.229 kb on + strandat 2038.264 kb on - strandat 2038.264 kb on - strandat 2038.281 kb on + strand, within MPMX20_01942at 2038.362 kb on + strand, within MPMX20_01942at 2038.401 kb on + strand, within MPMX20_01942at 2038.402 kb on + strand, within MPMX20_01942at 2038.440 kb on + strand, within MPMX20_01942at 2038.440 kb on + strand, within MPMX20_01942at 2038.440 kb on + strand, within MPMX20_01942at 2038.440 kb on + strand, within MPMX20_01942at 2038.448 kb on - strand, within MPMX20_01942at 2038.448 kb on - strand, within MPMX20_01942at 2038.448 kb on - strand, within MPMX20_01942at 2038.495 kb on - strand, within MPMX20_01942at 2038.496 kb on + strand, within MPMX20_01942at 2038.504 kb on - strand, within MPMX20_01942at 2038.629 kb on + strand, within MPMX20_01942at 2038.637 kb on - strand, within MPMX20_01942at 2038.637 kb on - strand, within MPMX20_01942at 2038.665 kb on - strand, within MPMX20_01942at 2038.665 kb on - strand, within MPMX20_01942at 2038.704 kb on + strand, within MPMX20_01942at 2038.719 kb on - strand, within MPMX20_01942at 2038.745 kb on - strand, within MPMX20_01942at 2038.876 kb on - strandat 2038.906 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 0.1X LB plate, Mixed culture; Bacillus haynesii TBS_113 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
remove
2,035,837 + -0.3
2,035,837 + -0.9
2,035,838 - +0.4
2,035,860 + -0.8
2,035,865 + +0.2
2,035,868 - -1.2
2,035,939 + MPMX20_01939 0.15 -1.0
2,035,947 - MPMX20_01939 0.17 -1.9
2,035,947 - MPMX20_01939 0.17 +0.6
2,035,952 - MPMX20_01939 0.19 -0.6
2,035,953 + MPMX20_01939 0.19 +0.0
2,035,968 - MPMX20_01939 0.24 -0.1
2,035,983 - MPMX20_01939 0.28 -2.0
2,035,988 + MPMX20_01939 0.30 -0.1
2,035,988 + MPMX20_01939 0.30 -1.2
2,035,991 - MPMX20_01939 0.31 -2.4
2,035,998 + MPMX20_01939 0.33 -1.7
2,035,998 + MPMX20_01939 0.33 -2.1
2,036,016 - MPMX20_01939 0.39 -1.5
2,036,017 - MPMX20_01939 0.39 -0.4
2,036,126 - MPMX20_01939 0.73 -1.6
2,036,143 + MPMX20_01939 0.78 -0.9
2,036,169 + MPMX20_01939 0.86 -0.7
2,036,192 + -2.7
2,036,215 - +2.5
2,036,222 - -1.1
2,036,248 + MPMX20_01940 0.13 +1.0
2,036,256 - MPMX20_01940 0.16 -1.4
2,036,256 - MPMX20_01940 0.16 -0.7
2,036,272 - MPMX20_01940 0.23 -1.0
2,036,300 + MPMX20_01940 0.35 +0.1
2,036,300 - MPMX20_01940 0.35 +0.1
2,036,308 - MPMX20_01940 0.38 -0.2
2,036,308 - MPMX20_01940 0.38 -0.4
2,036,308 - MPMX20_01940 0.38 -1.6
2,036,361 - MPMX20_01940 0.60 -0.5
2,036,361 - MPMX20_01940 0.60 -0.8
2,036,376 - MPMX20_01940 0.66 -0.7
2,036,407 - MPMX20_01940 0.79 -0.7
2,036,437 + +1.0
2,036,437 + +1.3
2,036,774 + +1.6
2,036,781 - +0.9
2,036,781 - +1.3
2,036,920 + MPMX20_01941 0.10 -0.1
2,036,947 + MPMX20_01941 0.12 +1.0
2,036,968 + MPMX20_01941 0.14 +1.4
2,037,017 - MPMX20_01941 0.18 +1.5
2,037,017 - MPMX20_01941 0.18 +0.9
2,037,018 - MPMX20_01941 0.18 +1.3
2,037,102 + MPMX20_01941 0.25 -0.0
2,037,227 - MPMX20_01941 0.35 -0.3
2,037,229 + MPMX20_01941 0.35 +1.4
2,037,293 - MPMX20_01941 0.41 +1.5
2,037,371 + MPMX20_01941 0.47 +0.8
2,037,379 - MPMX20_01941 0.48 -0.1
2,037,379 - MPMX20_01941 0.48 +0.7
2,037,398 - MPMX20_01941 0.49 +0.8
2,037,436 + MPMX20_01941 0.52 -0.5
2,037,445 - MPMX20_01941 0.53 +1.9
2,037,467 + MPMX20_01941 0.55 -0.1
2,037,529 + MPMX20_01941 0.60 +0.5
2,037,558 - MPMX20_01941 0.62 +2.5
2,037,664 - MPMX20_01941 0.71 +1.2
2,037,742 - MPMX20_01941 0.77 +0.2
2,037,871 + MPMX20_01941 0.88 +3.0
2,037,871 + MPMX20_01941 0.88 -0.9
2,037,921 + +0.1
2,037,921 - +0.5
2,038,071 + -2.4
2,038,073 + +0.2
2,038,097 + -0.3
2,038,102 - -1.6
2,038,105 + -1.2
2,038,105 + -1.6
2,038,105 + -1.1
2,038,105 + -0.4
2,038,105 + -1.0
2,038,105 + -0.7
2,038,105 + +0.0
2,038,105 + +0.1
2,038,105 + -1.1
2,038,105 + -0.7
2,038,105 - +0.9
2,038,107 - -0.1
2,038,113 - -0.7
2,038,113 - +5.6
2,038,113 - -1.1
2,038,113 - -0.0
2,038,113 - +0.9
2,038,113 - -1.7
2,038,113 - -2.0
2,038,113 - -0.8
2,038,113 - +0.1
2,038,113 - -0.9
2,038,113 - +1.9
2,038,162 + -1.1
2,038,201 + -2.8
2,038,210 + +0.3
2,038,229 + -1.2
2,038,264 - -0.1
2,038,264 - -0.3
2,038,281 + MPMX20_01942 0.10 -1.4
2,038,362 + MPMX20_01942 0.21 -0.7
2,038,401 + MPMX20_01942 0.27 -2.8
2,038,402 + MPMX20_01942 0.27 -2.7
2,038,440 + MPMX20_01942 0.32 -1.2
2,038,440 + MPMX20_01942 0.32 -2.2
2,038,440 + MPMX20_01942 0.32 -1.3
2,038,440 + MPMX20_01942 0.32 -2.4
2,038,448 - MPMX20_01942 0.33 +0.1
2,038,448 - MPMX20_01942 0.33 -1.4
2,038,448 - MPMX20_01942 0.33 -2.8
2,038,495 - MPMX20_01942 0.40 -1.1
2,038,496 + MPMX20_01942 0.40 -1.7
2,038,504 - MPMX20_01942 0.41 -0.1
2,038,629 + MPMX20_01942 0.58 -1.7
2,038,637 - MPMX20_01942 0.59 +0.9
2,038,637 - MPMX20_01942 0.59 -2.2
2,038,665 - MPMX20_01942 0.63 +0.2
2,038,665 - MPMX20_01942 0.63 -0.7
2,038,704 + MPMX20_01942 0.68 -0.9
2,038,719 - MPMX20_01942 0.70 -1.2
2,038,745 - MPMX20_01942 0.74 -2.2
2,038,876 - +1.5
2,038,906 - -1.2

Or see this region's nucleotide sequence