Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01816

Experiment: 0.1X LB plate, Mixed culture; Bacillus haynesii TBS_113 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_01815 and MPMX20_01816 are separated by 19 nucleotidesMPMX20_01816 and MPMX20_01817 are separated by 27 nucleotides MPMX20_01815: MPMX20_01815 - Adenylosuccinate lyase, at 1,909,935 to 1,911,305 _01815 MPMX20_01816: MPMX20_01816 - High frequency lysogenization protein HflD, at 1,911,325 to 1,911,954 _01816 MPMX20_01817: MPMX20_01817 - tRNA-specific 2-thiouridylase MnmA, at 1,911,982 to 1,913,151 _01817 Position (kb) 1911 1912Strain fitness (log2 ratio) -2 -1 0 1at 1911.406 kb on - strand, within MPMX20_01816at 1911.406 kb on - strand, within MPMX20_01816at 1911.577 kb on - strand, within MPMX20_01816at 1911.599 kb on - strand, within MPMX20_01816at 1911.914 kb on - strandat 1911.929 kb on - strandat 1911.929 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 0.1X LB plate, Mixed culture; Bacillus haynesii TBS_113 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
remove
1,911,406 - MPMX20_01816 0.13 -1.6
1,911,406 - MPMX20_01816 0.13 -2.2
1,911,577 - MPMX20_01816 0.40 -1.1
1,911,599 - MPMX20_01816 0.43 -2.7
1,911,914 - -0.5
1,911,929 - +0.1
1,911,929 - -1.7

Or see this region's nucleotide sequence