Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04337

Experiment: TSB plate, Mixed culture; Bacillus haynesii TBS_113 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_04336 and MPMX20_04337 are separated by 202 nucleotidesMPMX20_04337 and MPMX20_04338 are separated by 135 nucleotides MPMX20_04336: MPMX20_04336 - Leu/Ile/Val-binding protein, at 4,530,428 to 4,531,522 _04336 MPMX20_04337: MPMX20_04337 - 4-aminobutyrate aminotransferase PuuE, at 4,531,725 to 4,532,990 _04337 MPMX20_04338: MPMX20_04338 - RNA polymerase sigma factor RpoH, at 4,533,126 to 4,533,983 _04338 Position (kb) 4531 4532 4533Strain fitness (log2 ratio) -1 0 1 2 3at 4530.742 kb on - strand, within MPMX20_04336at 4530.742 kb on - strand, within MPMX20_04336at 4530.756 kb on + strand, within MPMX20_04336at 4530.756 kb on + strand, within MPMX20_04336at 4530.854 kb on - strand, within MPMX20_04336at 4530.920 kb on - strand, within MPMX20_04336at 4530.983 kb on + strand, within MPMX20_04336at 4530.983 kb on + strand, within MPMX20_04336at 4531.005 kb on - strand, within MPMX20_04336at 4531.006 kb on - strand, within MPMX20_04336at 4531.006 kb on - strand, within MPMX20_04336at 4531.051 kb on + strand, within MPMX20_04336at 4531.083 kb on + strand, within MPMX20_04336at 4531.083 kb on + strand, within MPMX20_04336at 4531.088 kb on + strand, within MPMX20_04336at 4531.091 kb on - strand, within MPMX20_04336at 4531.091 kb on - strand, within MPMX20_04336at 4531.126 kb on + strand, within MPMX20_04336at 4531.126 kb on + strand, within MPMX20_04336at 4531.134 kb on - strand, within MPMX20_04336at 4531.155 kb on - strand, within MPMX20_04336at 4531.206 kb on + strand, within MPMX20_04336at 4531.227 kb on + strand, within MPMX20_04336at 4531.227 kb on + strand, within MPMX20_04336at 4531.232 kb on + strand, within MPMX20_04336at 4531.260 kb on + strand, within MPMX20_04336at 4531.267 kb on + strand, within MPMX20_04336at 4531.270 kb on - strand, within MPMX20_04336at 4531.341 kb on + strand, within MPMX20_04336at 4531.359 kb on + strand, within MPMX20_04336at 4531.376 kb on + strand, within MPMX20_04336at 4531.389 kb on - strand, within MPMX20_04336at 4531.406 kb on + strand, within MPMX20_04336at 4531.422 kb on - strandat 4531.450 kb on + strandat 4531.473 kb on - strandat 4531.473 kb on - strandat 4531.494 kb on + strandat 4531.497 kb on - strandat 4531.551 kb on + strandat 4531.608 kb on - strandat 4531.681 kb on + strandat 4531.715 kb on + strandat 4531.715 kb on + strandat 4531.715 kb on + strandat 4531.723 kb on - strandat 4531.723 kb on - strandat 4531.723 kb on - strandat 4531.723 kb on - strandat 4531.724 kb on - strandat 4531.730 kb on - strandat 4531.730 kb on - strandat 4531.767 kb on + strandat 4531.767 kb on + strandat 4531.767 kb on + strandat 4531.777 kb on - strandat 4531.823 kb on - strandat 4531.831 kb on - strandat 4531.863 kb on + strand, within MPMX20_04337at 4531.863 kb on + strand, within MPMX20_04337at 4531.863 kb on + strand, within MPMX20_04337at 4531.871 kb on - strand, within MPMX20_04337at 4531.872 kb on - strand, within MPMX20_04337at 4531.931 kb on + strand, within MPMX20_04337at 4531.977 kb on - strand, within MPMX20_04337at 4531.981 kb on + strand, within MPMX20_04337at 4532.006 kb on - strand, within MPMX20_04337at 4532.032 kb on + strand, within MPMX20_04337at 4532.063 kb on + strand, within MPMX20_04337at 4532.064 kb on + strand, within MPMX20_04337at 4532.112 kb on - strand, within MPMX20_04337at 4532.128 kb on + strand, within MPMX20_04337at 4532.134 kb on + strand, within MPMX20_04337at 4532.226 kb on - strand, within MPMX20_04337at 4532.369 kb on + strand, within MPMX20_04337at 4532.419 kb on - strand, within MPMX20_04337at 4532.455 kb on - strand, within MPMX20_04337at 4532.466 kb on + strand, within MPMX20_04337at 4532.499 kb on - strand, within MPMX20_04337at 4532.567 kb on + strand, within MPMX20_04337at 4532.603 kb on + strand, within MPMX20_04337at 4532.617 kb on + strand, within MPMX20_04337at 4532.625 kb on - strand, within MPMX20_04337at 4532.662 kb on - strand, within MPMX20_04337at 4532.662 kb on - strand, within MPMX20_04337at 4532.699 kb on + strand, within MPMX20_04337at 4532.699 kb on + strand, within MPMX20_04337at 4532.745 kb on + strand, within MPMX20_04337at 4532.753 kb on - strand, within MPMX20_04337at 4532.771 kb on + strand, within MPMX20_04337at 4532.773 kb on - strand, within MPMX20_04337at 4532.830 kb on + strand, within MPMX20_04337at 4532.922 kb on - strandat 4532.922 kb on - strandat 4532.978 kb on - strandat 4532.990 kb on - strandat 4533.015 kb on + strandat 4533.023 kb on - strandat 4533.026 kb on + strandat 4533.034 kb on - strandat 4533.912 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction TSB plate, Mixed culture; Bacillus haynesii TBS_113 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
remove
4,530,742 - MPMX20_04336 0.29 -0.9
4,530,742 - MPMX20_04336 0.29 -0.6
4,530,756 + MPMX20_04336 0.30 +0.3
4,530,756 + MPMX20_04336 0.30 +2.2
4,530,854 - MPMX20_04336 0.39 +0.2
4,530,920 - MPMX20_04336 0.45 +3.1
4,530,983 + MPMX20_04336 0.51 -1.5
4,530,983 + MPMX20_04336 0.51 -0.9
4,531,005 - MPMX20_04336 0.53 +1.6
4,531,006 - MPMX20_04336 0.53 +0.1
4,531,006 - MPMX20_04336 0.53 -0.7
4,531,051 + MPMX20_04336 0.57 +0.4
4,531,083 + MPMX20_04336 0.60 +0.3
4,531,083 + MPMX20_04336 0.60 -1.4
4,531,088 + MPMX20_04336 0.60 -0.4
4,531,091 - MPMX20_04336 0.61 -0.2
4,531,091 - MPMX20_04336 0.61 -0.4
4,531,126 + MPMX20_04336 0.64 -1.4
4,531,126 + MPMX20_04336 0.64 -0.9
4,531,134 - MPMX20_04336 0.64 -1.4
4,531,155 - MPMX20_04336 0.66 -0.7
4,531,206 + MPMX20_04336 0.71 +0.9
4,531,227 + MPMX20_04336 0.73 +0.4
4,531,227 + MPMX20_04336 0.73 -0.1
4,531,232 + MPMX20_04336 0.73 +1.1
4,531,260 + MPMX20_04336 0.76 +0.6
4,531,267 + MPMX20_04336 0.77 +0.6
4,531,270 - MPMX20_04336 0.77 -1.2
4,531,341 + MPMX20_04336 0.83 +0.3
4,531,359 + MPMX20_04336 0.85 +1.6
4,531,376 + MPMX20_04336 0.87 +0.1
4,531,389 - MPMX20_04336 0.88 +2.2
4,531,406 + MPMX20_04336 0.89 +1.2
4,531,422 - +0.4
4,531,450 + -0.5
4,531,473 - +2.1
4,531,473 - +0.8
4,531,494 + -0.9
4,531,497 - +1.1
4,531,551 + -0.1
4,531,608 - +0.6
4,531,681 + -0.1
4,531,715 + -1.3
4,531,715 + +0.6
4,531,715 + -0.5
4,531,723 - +1.2
4,531,723 - +0.1
4,531,723 - -0.1
4,531,723 - +0.5
4,531,724 - +1.0
4,531,730 - +0.4
4,531,730 - +1.6
4,531,767 + -0.4
4,531,767 + +1.2
4,531,767 + -0.1
4,531,777 - -0.8
4,531,823 - +0.0
4,531,831 - -1.5
4,531,863 + MPMX20_04337 0.11 -0.9
4,531,863 + MPMX20_04337 0.11 -0.7
4,531,863 + MPMX20_04337 0.11 -0.1
4,531,871 - MPMX20_04337 0.12 -0.9
4,531,872 - MPMX20_04337 0.12 +0.5
4,531,931 + MPMX20_04337 0.16 +1.3
4,531,977 - MPMX20_04337 0.20 -0.9
4,531,981 + MPMX20_04337 0.20 -1.7
4,532,006 - MPMX20_04337 0.22 -0.2
4,532,032 + MPMX20_04337 0.24 -1.4
4,532,063 + MPMX20_04337 0.27 -1.6
4,532,064 + MPMX20_04337 0.27 -0.7
4,532,112 - MPMX20_04337 0.31 -0.1
4,532,128 + MPMX20_04337 0.32 +0.2
4,532,134 + MPMX20_04337 0.32 -0.1
4,532,226 - MPMX20_04337 0.40 +0.1
4,532,369 + MPMX20_04337 0.51 +0.9
4,532,419 - MPMX20_04337 0.55 -0.6
4,532,455 - MPMX20_04337 0.58 -0.7
4,532,466 + MPMX20_04337 0.59 -1.2
4,532,499 - MPMX20_04337 0.61 +1.6
4,532,567 + MPMX20_04337 0.67 -1.6
4,532,603 + MPMX20_04337 0.69 -0.5
4,532,617 + MPMX20_04337 0.70 +0.5
4,532,625 - MPMX20_04337 0.71 -0.7
4,532,662 - MPMX20_04337 0.74 +0.3
4,532,662 - MPMX20_04337 0.74 +0.6
4,532,699 + MPMX20_04337 0.77 -0.2
4,532,699 + MPMX20_04337 0.77 -0.2
4,532,745 + MPMX20_04337 0.81 +0.3
4,532,753 - MPMX20_04337 0.81 +1.0
4,532,771 + MPMX20_04337 0.83 +0.3
4,532,773 - MPMX20_04337 0.83 +0.9
4,532,830 + MPMX20_04337 0.87 -1.7
4,532,922 - -0.7
4,532,922 - +1.3
4,532,978 - +1.6
4,532,990 - -0.1
4,533,015 + +1.0
4,533,023 - +0.2
4,533,026 + +1.5
4,533,034 - +2.1
4,533,912 - +0.1

Or see this region's nucleotide sequence