Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03323

Experiment: TSB plate, Mixed culture; Bacillus haynesii TBS_113 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03322 and MPMX20_03323 overlap by 1 nucleotidesMPMX20_03323 and MPMX20_03324 are separated by 18 nucleotides MPMX20_03322: MPMX20_03322 - N-acetylmuramoyl-L-alanine amidase AmiA, at 3,489,629 to 3,490,504 _03322 MPMX20_03323: MPMX20_03323 - Oxygen-dependent coproporphyrinogen-III oxidase, at 3,490,504 to 3,491,403 _03323 MPMX20_03324: MPMX20_03324 - NADP-dependent malic enzyme, at 3,491,422 to 3,493,701 _03324 Position (kb) 3490 3491 3492Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6at 3489.575 kb on - strandat 3489.590 kb on + strandat 3489.644 kb on - strandat 3489.695 kb on + strandat 3489.732 kb on - strand, within MPMX20_03322at 3489.802 kb on + strand, within MPMX20_03322at 3489.802 kb on + strand, within MPMX20_03322at 3489.810 kb on - strand, within MPMX20_03322at 3489.816 kb on - strand, within MPMX20_03322at 3489.892 kb on - strand, within MPMX20_03322at 3489.971 kb on - strand, within MPMX20_03322at 3490.008 kb on + strand, within MPMX20_03322at 3490.075 kb on - strand, within MPMX20_03322at 3490.084 kb on + strand, within MPMX20_03322at 3490.092 kb on - strand, within MPMX20_03322at 3490.213 kb on - strand, within MPMX20_03322at 3490.236 kb on + strand, within MPMX20_03322at 3490.275 kb on - strand, within MPMX20_03322at 3490.332 kb on - strand, within MPMX20_03322at 3490.405 kb on - strand, within MPMX20_03322at 3490.445 kb on + strandat 3490.509 kb on + strandat 3490.580 kb on - strandat 3490.650 kb on + strand, within MPMX20_03323at 3490.741 kb on + strand, within MPMX20_03323at 3490.758 kb on - strand, within MPMX20_03323at 3490.807 kb on - strand, within MPMX20_03323at 3490.851 kb on + strand, within MPMX20_03323at 3490.856 kb on + strand, within MPMX20_03323at 3490.904 kb on + strand, within MPMX20_03323at 3491.110 kb on - strand, within MPMX20_03323at 3491.120 kb on + strand, within MPMX20_03323at 3491.125 kb on + strand, within MPMX20_03323at 3491.139 kb on - strand, within MPMX20_03323at 3491.174 kb on + strand, within MPMX20_03323at 3491.245 kb on - strand, within MPMX20_03323at 3491.334 kb on - strandat 3491.344 kb on + strandat 3491.355 kb on + strandat 3491.394 kb on - strandat 3491.398 kb on + strandat 3491.521 kb on - strandat 3491.527 kb on + strandat 3491.535 kb on - strandat 3491.538 kb on + strandat 3491.538 kb on + strandat 3491.552 kb on - strandat 3491.561 kb on - strandat 3491.595 kb on - strandat 3491.680 kb on - strand, within MPMX20_03324at 3491.687 kb on + strand, within MPMX20_03324at 3491.823 kb on + strand, within MPMX20_03324at 3491.995 kb on + strand, within MPMX20_03324at 3492.013 kb on - strand, within MPMX20_03324at 3492.043 kb on + strand, within MPMX20_03324at 3492.051 kb on - strand, within MPMX20_03324at 3492.051 kb on - strand, within MPMX20_03324at 3492.103 kb on - strand, within MPMX20_03324at 3492.131 kb on - strand, within MPMX20_03324at 3492.168 kb on - strand, within MPMX20_03324at 3492.175 kb on - strand, within MPMX20_03324at 3492.303 kb on + strand, within MPMX20_03324

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB plate, Mixed culture; Bacillus haynesii TBS_113 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
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3,489,575 - -0.7
3,489,590 + -0.5
3,489,644 - +0.7
3,489,695 + +0.7
3,489,732 - MPMX20_03322 0.12 -0.2
3,489,802 + MPMX20_03322 0.20 +2.8
3,489,802 + MPMX20_03322 0.20 +0.2
3,489,810 - MPMX20_03322 0.21 +1.1
3,489,816 - MPMX20_03322 0.21 +1.7
3,489,892 - MPMX20_03322 0.30 +0.3
3,489,971 - MPMX20_03322 0.39 -0.0
3,490,008 + MPMX20_03322 0.43 -0.1
3,490,075 - MPMX20_03322 0.51 -0.4
3,490,084 + MPMX20_03322 0.52 +0.1
3,490,092 - MPMX20_03322 0.53 -0.7
3,490,213 - MPMX20_03322 0.67 +2.2
3,490,236 + MPMX20_03322 0.69 +2.7
3,490,275 - MPMX20_03322 0.74 -0.7
3,490,332 - MPMX20_03322 0.80 +0.0
3,490,405 - MPMX20_03322 0.89 +1.1
3,490,445 + -0.2
3,490,509 + -1.0
3,490,580 - +0.2
3,490,650 + MPMX20_03323 0.16 +0.1
3,490,741 + MPMX20_03323 0.26 -1.7
3,490,758 - MPMX20_03323 0.28 +0.3
3,490,807 - MPMX20_03323 0.34 -0.1
3,490,851 + MPMX20_03323 0.39 -0.7
3,490,856 + MPMX20_03323 0.39 +1.3
3,490,904 + MPMX20_03323 0.44 +0.1
3,491,110 - MPMX20_03323 0.67 -0.7
3,491,120 + MPMX20_03323 0.68 +1.0
3,491,125 + MPMX20_03323 0.69 +6.4
3,491,139 - MPMX20_03323 0.71 -2.0
3,491,174 + MPMX20_03323 0.74 -2.5
3,491,245 - MPMX20_03323 0.82 -1.1
3,491,334 - +2.2
3,491,344 + -0.6
3,491,355 + -1.9
3,491,394 - -1.8
3,491,398 + +0.7
3,491,521 - +0.1
3,491,527 + +0.7
3,491,535 - -0.1
3,491,538 + -0.1
3,491,538 + +2.7
3,491,552 - -2.2
3,491,561 - -1.0
3,491,595 - +0.3
3,491,680 - MPMX20_03324 0.11 +0.7
3,491,687 + MPMX20_03324 0.12 -0.5
3,491,823 + MPMX20_03324 0.18 +0.1
3,491,995 + MPMX20_03324 0.25 -0.4
3,492,013 - MPMX20_03324 0.26 +0.2
3,492,043 + MPMX20_03324 0.27 +0.7
3,492,051 - MPMX20_03324 0.28 +0.7
3,492,051 - MPMX20_03324 0.28 +0.7
3,492,103 - MPMX20_03324 0.30 +0.2
3,492,131 - MPMX20_03324 0.31 +1.9
3,492,168 - MPMX20_03324 0.33 +0.7
3,492,175 - MPMX20_03324 0.33 -0.8
3,492,303 + MPMX20_03324 0.39 +0.2

Or see this region's nucleotide sequence