Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_02082

Experiment: TSB plate, Mixed culture; Bacillus haynesii TBS_113 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_02080 and MPMX20_02081 are separated by 18 nucleotidesMPMX20_02081 and MPMX20_02082 are separated by 42 nucleotidesMPMX20_02082 and MPMX20_02083 are separated by 1 nucleotidesMPMX20_02083 and MPMX20_02084 are separated by 10 nucleotides MPMX20_02080: MPMX20_02080 - Allophanate hydrolase, at 2,174,694 to 2,176,493 _02080 MPMX20_02081: MPMX20_02081 - Tat proofreading chaperone DmsD, at 2,176,512 to 2,177,126 _02081 MPMX20_02082: MPMX20_02082 - Anaerobic dimethyl sulfoxide reductase chain C, at 2,177,169 to 2,178,023 _02082 MPMX20_02083: MPMX20_02083 - Anaerobic dimethyl sulfoxide reductase chain B, at 2,178,025 to 2,178,642 _02083 MPMX20_02084: MPMX20_02084 - Putative dimethyl sulfoxide reductase chain YnfE, at 2,178,653 to 2,181,091 _02084 Position (kb) 2177 2178 2179Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2176.183 kb on + strand, within MPMX20_02080at 2176.215 kb on + strand, within MPMX20_02080at 2176.253 kb on + strand, within MPMX20_02080at 2176.283 kb on - strand, within MPMX20_02080at 2176.311 kb on + strand, within MPMX20_02080at 2176.319 kb on - strandat 2176.425 kb on + strandat 2176.427 kb on + strandat 2176.433 kb on - strandat 2176.433 kb on - strandat 2176.497 kb on + strandat 2176.500 kb on - strandat 2176.503 kb on + strandat 2176.505 kb on - strandat 2176.511 kb on - strandat 2176.563 kb on + strandat 2176.578 kb on + strand, within MPMX20_02081at 2176.585 kb on + strand, within MPMX20_02081at 2176.600 kb on + strand, within MPMX20_02081at 2176.600 kb on + strand, within MPMX20_02081at 2176.603 kb on - strand, within MPMX20_02081at 2176.608 kb on - strand, within MPMX20_02081at 2176.651 kb on + strand, within MPMX20_02081at 2176.809 kb on - strand, within MPMX20_02081at 2176.809 kb on - strand, within MPMX20_02081at 2176.817 kb on + strand, within MPMX20_02081at 2176.817 kb on + strand, within MPMX20_02081at 2176.825 kb on - strand, within MPMX20_02081at 2176.873 kb on + strand, within MPMX20_02081at 2176.873 kb on + strand, within MPMX20_02081at 2176.881 kb on - strand, within MPMX20_02081at 2176.893 kb on - strand, within MPMX20_02081at 2176.992 kb on + strand, within MPMX20_02081at 2177.000 kb on - strand, within MPMX20_02081at 2177.008 kb on + strand, within MPMX20_02081at 2177.028 kb on - strand, within MPMX20_02081at 2177.086 kb on - strandat 2177.166 kb on + strandat 2177.166 kb on + strandat 2177.166 kb on + strandat 2177.196 kb on - strandat 2177.199 kb on + strandat 2177.398 kb on + strand, within MPMX20_02082at 2177.425 kb on - strand, within MPMX20_02082at 2177.451 kb on + strand, within MPMX20_02082at 2177.451 kb on + strand, within MPMX20_02082at 2177.451 kb on + strand, within MPMX20_02082at 2177.451 kb on + strand, within MPMX20_02082at 2177.451 kb on + strand, within MPMX20_02082at 2177.451 kb on + strand, within MPMX20_02082at 2177.451 kb on + strand, within MPMX20_02082at 2177.451 kb on + strand, within MPMX20_02082at 2177.459 kb on - strand, within MPMX20_02082at 2177.459 kb on - strand, within MPMX20_02082at 2177.459 kb on - strand, within MPMX20_02082at 2177.459 kb on - strand, within MPMX20_02082at 2177.459 kb on - strand, within MPMX20_02082at 2177.527 kb on + strand, within MPMX20_02082at 2177.533 kb on - strand, within MPMX20_02082at 2177.545 kb on + strand, within MPMX20_02082at 2177.545 kb on + strand, within MPMX20_02082at 2177.573 kb on + strand, within MPMX20_02082at 2177.584 kb on + strand, within MPMX20_02082at 2177.603 kb on - strand, within MPMX20_02082at 2177.603 kb on - strand, within MPMX20_02082at 2177.645 kb on - strand, within MPMX20_02082at 2177.654 kb on + strand, within MPMX20_02082at 2177.696 kb on + strand, within MPMX20_02082at 2177.812 kb on + strand, within MPMX20_02082at 2177.819 kb on - strand, within MPMX20_02082at 2177.860 kb on + strand, within MPMX20_02082at 2177.929 kb on + strand, within MPMX20_02082at 2177.980 kb on - strandat 2178.651 kb on + strandat 2178.651 kb on + strandat 2178.696 kb on + strandat 2178.696 kb on + strandat 2178.696 kb on + strandat 2178.696 kb on + strandat 2178.704 kb on - strandat 2178.773 kb on - strandat 2178.910 kb on - strand, within MPMX20_02084at 2178.927 kb on + strand, within MPMX20_02084at 2178.935 kb on - strand, within MPMX20_02084at 2178.977 kb on + strand, within MPMX20_02084at 2178.977 kb on + strand, within MPMX20_02084at 2178.994 kb on - strand, within MPMX20_02084at 2178.994 kb on - strand, within MPMX20_02084

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB plate, Mixed culture; Bacillus haynesii TBS_113 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
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2,176,183 + MPMX20_02080 0.83 +0.3
2,176,215 + MPMX20_02080 0.84 -1.0
2,176,253 + MPMX20_02080 0.87 +0.5
2,176,283 - MPMX20_02080 0.88 +0.5
2,176,311 + MPMX20_02080 0.90 +0.6
2,176,319 - +2.8
2,176,425 + -2.2
2,176,427 + -0.7
2,176,433 - +0.1
2,176,433 - +0.4
2,176,497 + +0.5
2,176,500 - -0.3
2,176,503 + +0.3
2,176,505 - +1.0
2,176,511 - +2.0
2,176,563 + +1.0
2,176,578 + MPMX20_02081 0.11 -0.1
2,176,585 + MPMX20_02081 0.12 +0.4
2,176,600 + MPMX20_02081 0.14 -1.4
2,176,600 + MPMX20_02081 0.14 -0.7
2,176,603 - MPMX20_02081 0.15 +0.6
2,176,608 - MPMX20_02081 0.16 +0.0
2,176,651 + MPMX20_02081 0.23 -1.4
2,176,809 - MPMX20_02081 0.48 -2.3
2,176,809 - MPMX20_02081 0.48 -1.0
2,176,817 + MPMX20_02081 0.50 +2.3
2,176,817 + MPMX20_02081 0.50 +0.5
2,176,825 - MPMX20_02081 0.51 +0.2
2,176,873 + MPMX20_02081 0.59 -1.5
2,176,873 + MPMX20_02081 0.59 -0.9
2,176,881 - MPMX20_02081 0.60 -0.1
2,176,893 - MPMX20_02081 0.62 +0.9
2,176,992 + MPMX20_02081 0.78 -0.5
2,177,000 - MPMX20_02081 0.79 +1.0
2,177,008 + MPMX20_02081 0.81 -1.0
2,177,028 - MPMX20_02081 0.84 +1.3
2,177,086 - +1.6
2,177,166 + +1.3
2,177,166 + -0.1
2,177,166 + -0.0
2,177,196 - +0.5
2,177,199 + -0.3
2,177,398 + MPMX20_02082 0.27 +0.5
2,177,425 - MPMX20_02082 0.30 -0.9
2,177,451 + MPMX20_02082 0.33 -1.1
2,177,451 + MPMX20_02082 0.33 -0.4
2,177,451 + MPMX20_02082 0.33 -1.5
2,177,451 + MPMX20_02082 0.33 +0.7
2,177,451 + MPMX20_02082 0.33 -0.1
2,177,451 + MPMX20_02082 0.33 +0.4
2,177,451 + MPMX20_02082 0.33 +0.1
2,177,451 + MPMX20_02082 0.33 +2.0
2,177,459 - MPMX20_02082 0.34 -1.0
2,177,459 - MPMX20_02082 0.34 -0.6
2,177,459 - MPMX20_02082 0.34 +0.7
2,177,459 - MPMX20_02082 0.34 +1.4
2,177,459 - MPMX20_02082 0.34 +0.9
2,177,527 + MPMX20_02082 0.42 -0.9
2,177,533 - MPMX20_02082 0.43 -0.7
2,177,545 + MPMX20_02082 0.44 +3.1
2,177,545 + MPMX20_02082 0.44 -1.0
2,177,573 + MPMX20_02082 0.47 +1.9
2,177,584 + MPMX20_02082 0.49 -0.8
2,177,603 - MPMX20_02082 0.51 -0.5
2,177,603 - MPMX20_02082 0.51 +1.6
2,177,645 - MPMX20_02082 0.56 +0.0
2,177,654 + MPMX20_02082 0.57 -1.7
2,177,696 + MPMX20_02082 0.62 +1.6
2,177,812 + MPMX20_02082 0.75 +0.4
2,177,819 - MPMX20_02082 0.76 -0.1
2,177,860 + MPMX20_02082 0.81 +0.8
2,177,929 + MPMX20_02082 0.89 +1.0
2,177,980 - +0.0
2,178,651 + +0.3
2,178,651 + +0.0
2,178,696 + +0.3
2,178,696 + +1.0
2,178,696 + -0.1
2,178,696 + -0.3
2,178,704 - +0.2
2,178,773 - +0.1
2,178,910 - MPMX20_02084 0.11 +0.0
2,178,927 + MPMX20_02084 0.11 +0.0
2,178,935 - MPMX20_02084 0.12 -1.9
2,178,977 + MPMX20_02084 0.13 +0.7
2,178,977 + MPMX20_02084 0.13 +0.3
2,178,994 - MPMX20_02084 0.14 +1.4
2,178,994 - MPMX20_02084 0.14 +2.6

Or see this region's nucleotide sequence