Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01253

Experiment: TSB plate, Mixed culture; Bacillus haynesii TBS_113 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01252 and MPMX20_01253 are separated by 13 nucleotidesMPMX20_01253 and MPMX20_01254 overlap by 4 nucleotides MPMX20_01252: MPMX20_01252 - Carboxypeptidase G2, at 1,315,881 to 1,316,993 _01252 MPMX20_01253: MPMX20_01253 - Inner membrane protein YjiG, at 1,317,007 to 1,317,471 _01253 MPMX20_01254: MPMX20_01254 - hypothetical protein, at 1,317,468 to 1,318,190 _01254 Position (kb) 1317 1318Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1316.014 kb on + strand, within MPMX20_01252at 1316.017 kb on - strand, within MPMX20_01252at 1316.164 kb on + strand, within MPMX20_01252at 1316.312 kb on + strand, within MPMX20_01252at 1316.312 kb on + strand, within MPMX20_01252at 1316.320 kb on - strand, within MPMX20_01252at 1316.320 kb on - strand, within MPMX20_01252at 1316.320 kb on - strand, within MPMX20_01252at 1316.385 kb on + strand, within MPMX20_01252at 1316.442 kb on + strand, within MPMX20_01252at 1316.484 kb on - strand, within MPMX20_01252at 1316.499 kb on - strand, within MPMX20_01252at 1316.541 kb on - strand, within MPMX20_01252at 1316.572 kb on + strand, within MPMX20_01252at 1316.610 kb on + strand, within MPMX20_01252at 1316.610 kb on + strand, within MPMX20_01252at 1316.617 kb on + strand, within MPMX20_01252at 1316.676 kb on + strand, within MPMX20_01252at 1316.676 kb on + strand, within MPMX20_01252at 1316.676 kb on + strand, within MPMX20_01252at 1316.676 kb on + strand, within MPMX20_01252at 1316.676 kb on + strand, within MPMX20_01252at 1316.690 kb on + strand, within MPMX20_01252at 1316.713 kb on - strand, within MPMX20_01252at 1316.786 kb on + strand, within MPMX20_01252at 1316.831 kb on + strand, within MPMX20_01252at 1316.856 kb on - strand, within MPMX20_01252at 1316.929 kb on + strandat 1316.932 kb on - strandat 1316.959 kb on + strandat 1316.960 kb on - strandat 1317.020 kb on - strandat 1317.034 kb on + strandat 1317.070 kb on - strand, within MPMX20_01253at 1317.129 kb on + strand, within MPMX20_01253at 1317.129 kb on + strand, within MPMX20_01253at 1317.134 kb on - strand, within MPMX20_01253at 1317.137 kb on - strand, within MPMX20_01253at 1317.301 kb on + strand, within MPMX20_01253at 1317.320 kb on + strand, within MPMX20_01253at 1317.347 kb on + strand, within MPMX20_01253at 1317.387 kb on - strand, within MPMX20_01253at 1317.403 kb on + strand, within MPMX20_01253at 1317.457 kb on - strandat 1317.475 kb on - strandat 1317.569 kb on + strand, within MPMX20_01254at 1317.595 kb on - strand, within MPMX20_01254at 1317.632 kb on + strand, within MPMX20_01254at 1317.632 kb on + strand, within MPMX20_01254at 1317.632 kb on + strand, within MPMX20_01254at 1317.632 kb on + strand, within MPMX20_01254at 1317.632 kb on + strand, within MPMX20_01254at 1317.640 kb on - strand, within MPMX20_01254at 1317.640 kb on - strand, within MPMX20_01254at 1317.641 kb on + strand, within MPMX20_01254at 1317.642 kb on + strand, within MPMX20_01254at 1317.697 kb on - strand, within MPMX20_01254at 1317.746 kb on + strand, within MPMX20_01254at 1317.754 kb on - strand, within MPMX20_01254at 1317.754 kb on - strand, within MPMX20_01254at 1317.777 kb on + strand, within MPMX20_01254at 1317.872 kb on + strand, within MPMX20_01254at 1317.873 kb on - strand, within MPMX20_01254at 1317.885 kb on - strand, within MPMX20_01254at 1317.902 kb on + strand, within MPMX20_01254at 1317.915 kb on + strand, within MPMX20_01254at 1318.001 kb on - strand, within MPMX20_01254at 1318.016 kb on + strand, within MPMX20_01254at 1318.056 kb on + strand, within MPMX20_01254at 1318.087 kb on - strand, within MPMX20_01254at 1318.109 kb on - strand, within MPMX20_01254at 1318.177 kb on + strandat 1318.188 kb on - strandat 1318.338 kb on + strandat 1318.469 kb on + strandat 1318.470 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB plate, Mixed culture; Bacillus haynesii TBS_113 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
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1,316,014 + MPMX20_01252 0.12 +0.5
1,316,017 - MPMX20_01252 0.12 -0.4
1,316,164 + MPMX20_01252 0.25 +1.8
1,316,312 + MPMX20_01252 0.39 +0.6
1,316,312 + MPMX20_01252 0.39 -0.7
1,316,320 - MPMX20_01252 0.39 +1.3
1,316,320 - MPMX20_01252 0.39 -1.8
1,316,320 - MPMX20_01252 0.39 +2.2
1,316,385 + MPMX20_01252 0.45 -0.7
1,316,442 + MPMX20_01252 0.50 +1.0
1,316,484 - MPMX20_01252 0.54 -0.4
1,316,499 - MPMX20_01252 0.56 +0.5
1,316,541 - MPMX20_01252 0.59 +1.6
1,316,572 + MPMX20_01252 0.62 -2.5
1,316,610 + MPMX20_01252 0.65 -1.0
1,316,610 + MPMX20_01252 0.65 +2.9
1,316,617 + MPMX20_01252 0.66 +0.3
1,316,676 + MPMX20_01252 0.71 -0.3
1,316,676 + MPMX20_01252 0.71 -1.3
1,316,676 + MPMX20_01252 0.71 -2.0
1,316,676 + MPMX20_01252 0.71 +0.1
1,316,676 + MPMX20_01252 0.71 +0.2
1,316,690 + MPMX20_01252 0.73 +2.2
1,316,713 - MPMX20_01252 0.75 -0.2
1,316,786 + MPMX20_01252 0.81 -2.1
1,316,831 + MPMX20_01252 0.85 +1.1
1,316,856 - MPMX20_01252 0.88 -0.0
1,316,929 + -1.2
1,316,932 - +1.6
1,316,959 + -0.0
1,316,960 - -1.7
1,317,020 - +0.2
1,317,034 + -0.3
1,317,070 - MPMX20_01253 0.14 +0.7
1,317,129 + MPMX20_01253 0.26 -1.4
1,317,129 + MPMX20_01253 0.26 -1.2
1,317,134 - MPMX20_01253 0.27 -1.3
1,317,137 - MPMX20_01253 0.28 +0.6
1,317,301 + MPMX20_01253 0.63 -0.2
1,317,320 + MPMX20_01253 0.67 -3.0
1,317,347 + MPMX20_01253 0.73 -1.8
1,317,387 - MPMX20_01253 0.82 -0.5
1,317,403 + MPMX20_01253 0.85 -0.0
1,317,457 - -1.0
1,317,475 - +0.6
1,317,569 + MPMX20_01254 0.14 -0.0
1,317,595 - MPMX20_01254 0.18 -0.6
1,317,632 + MPMX20_01254 0.23 -1.1
1,317,632 + MPMX20_01254 0.23 -1.6
1,317,632 + MPMX20_01254 0.23 -0.0
1,317,632 + MPMX20_01254 0.23 -0.7
1,317,632 + MPMX20_01254 0.23 -0.7
1,317,640 - MPMX20_01254 0.24 +0.4
1,317,640 - MPMX20_01254 0.24 -0.7
1,317,641 + MPMX20_01254 0.24 -0.0
1,317,642 + MPMX20_01254 0.24 +0.7
1,317,697 - MPMX20_01254 0.32 -0.4
1,317,746 + MPMX20_01254 0.38 +0.1
1,317,754 - MPMX20_01254 0.40 -0.1
1,317,754 - MPMX20_01254 0.40 -0.7
1,317,777 + MPMX20_01254 0.43 +0.4
1,317,872 + MPMX20_01254 0.56 +0.3
1,317,873 - MPMX20_01254 0.56 +0.7
1,317,885 - MPMX20_01254 0.58 +0.6
1,317,902 + MPMX20_01254 0.60 +1.9
1,317,915 + MPMX20_01254 0.62 -0.9
1,318,001 - MPMX20_01254 0.74 +2.7
1,318,016 + MPMX20_01254 0.76 -1.2
1,318,056 + MPMX20_01254 0.81 +1.0
1,318,087 - MPMX20_01254 0.86 +2.2
1,318,109 - MPMX20_01254 0.89 -0.3
1,318,177 + -1.4
1,318,188 - -1.0
1,318,338 + +0.1
1,318,469 + +0.3
1,318,470 - -1.1

Or see this region's nucleotide sequence