Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01778

Experiment: M9 plate, Mixed culture; Bacillus haynesii TBS_113 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01777 and MPMX20_01778 overlap by 11 nucleotidesMPMX20_01778 and MPMX20_01779 overlap by 4 nucleotides MPMX20_01777: MPMX20_01777 - Endolytic murein transglycosylase, at 1,869,185 to 1,870,207 _01777 MPMX20_01778: MPMX20_01778 - Thymidylate kinase, at 1,870,197 to 1,870,838 _01778 MPMX20_01779: MPMX20_01779 - DNA polymerase III subunit delta', at 1,870,835 to 1,871,839 _01779 Position (kb) 1870 1871Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1869.277 kb on + strandat 1869.285 kb on - strandat 1869.287 kb on - strandat 1869.287 kb on - strandat 1869.323 kb on + strand, within MPMX20_01777at 1869.352 kb on + strand, within MPMX20_01777at 1869.411 kb on + strand, within MPMX20_01777at 1869.487 kb on + strand, within MPMX20_01777at 1869.496 kb on + strand, within MPMX20_01777at 1869.651 kb on - strand, within MPMX20_01777at 1869.676 kb on + strand, within MPMX20_01777at 1869.892 kb on + strand, within MPMX20_01777at 1869.900 kb on - strand, within MPMX20_01777at 1869.984 kb on + strand, within MPMX20_01777at 1869.992 kb on - strand, within MPMX20_01777at 1870.003 kb on - strand, within MPMX20_01777at 1870.045 kb on + strand, within MPMX20_01777at 1870.067 kb on + strand, within MPMX20_01777at 1870.163 kb on + strandat 1870.816 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 plate, Mixed culture; Bacillus haynesii TBS_113 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
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1,869,277 + -0.6
1,869,285 - -2.7
1,869,287 - -1.3
1,869,287 - -0.6
1,869,323 + MPMX20_01777 0.13 -0.6
1,869,352 + MPMX20_01777 0.16 -0.8
1,869,411 + MPMX20_01777 0.22 +2.8
1,869,487 + MPMX20_01777 0.30 -1.0
1,869,496 + MPMX20_01777 0.30 -0.2
1,869,651 - MPMX20_01777 0.46 +0.9
1,869,676 + MPMX20_01777 0.48 -1.2
1,869,892 + MPMX20_01777 0.69 -1.6
1,869,900 - MPMX20_01777 0.70 -1.3
1,869,984 + MPMX20_01777 0.78 -0.5
1,869,992 - MPMX20_01777 0.79 +0.5
1,870,003 - MPMX20_01777 0.80 -1.9
1,870,045 + MPMX20_01777 0.84 -0.1
1,870,067 + MPMX20_01777 0.86 -2.3
1,870,163 + +1.0
1,870,816 + -0.2

Or see this region's nucleotide sequence