Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_02347

Experiment: 1X LB plate, Mixed culture; Bacillus haynesii TBS_113 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_02346 and MPMX20_02347 are separated by 97 nucleotidesMPMX20_02347 and MPMX20_02348 are separated by 28 nucleotides MPMX20_02346: MPMX20_02346 - Methyl-accepting chemotaxis protein III, at 2,471,251 to 2,472,801 _02346 MPMX20_02347: MPMX20_02347 - Catabolite repressor/activator, at 2,472,899 to 2,473,915 _02347 MPMX20_02348: MPMX20_02348 - Sucrose-6-phosphate hydrolase, at 2,473,944 to 2,475,350 _02348 Position (kb) 2472 2473 2474Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2472.045 kb on + strand, within MPMX20_02346at 2472.045 kb on + strand, within MPMX20_02346at 2472.048 kb on + strand, within MPMX20_02346at 2472.053 kb on - strand, within MPMX20_02346at 2472.053 kb on - strand, within MPMX20_02346at 2472.217 kb on + strand, within MPMX20_02346at 2472.337 kb on - strand, within MPMX20_02346at 2472.355 kb on - strand, within MPMX20_02346at 2472.357 kb on + strand, within MPMX20_02346at 2472.365 kb on - strand, within MPMX20_02346at 2472.365 kb on - strand, within MPMX20_02346at 2472.365 kb on - strand, within MPMX20_02346at 2472.365 kb on - strand, within MPMX20_02346at 2472.417 kb on - strand, within MPMX20_02346at 2472.474 kb on - strand, within MPMX20_02346at 2472.474 kb on - strand, within MPMX20_02346at 2472.517 kb on + strand, within MPMX20_02346at 2472.541 kb on + strand, within MPMX20_02346at 2472.606 kb on + strand, within MPMX20_02346at 2472.607 kb on + strand, within MPMX20_02346at 2472.609 kb on + strand, within MPMX20_02346at 2472.614 kb on + strand, within MPMX20_02346at 2472.614 kb on + strand, within MPMX20_02346at 2472.615 kb on - strand, within MPMX20_02346at 2472.617 kb on - strand, within MPMX20_02346at 2472.617 kb on - strand, within MPMX20_02346at 2472.622 kb on - strand, within MPMX20_02346at 2472.627 kb on + strand, within MPMX20_02346at 2472.627 kb on + strand, within MPMX20_02346at 2472.628 kb on + strand, within MPMX20_02346at 2472.629 kb on + strand, within MPMX20_02346at 2472.635 kb on - strand, within MPMX20_02346at 2472.658 kb on + strandat 2472.720 kb on + strandat 2472.720 kb on + strandat 2472.720 kb on + strandat 2472.728 kb on - strandat 2472.728 kb on - strandat 2472.730 kb on + strandat 2472.899 kb on - strandat 2472.904 kb on - strandat 2472.904 kb on - strandat 2472.904 kb on - strandat 2472.904 kb on - strandat 2472.904 kb on - strandat 2472.905 kb on - strandat 2472.928 kb on - strandat 2472.991 kb on + strandat 2472.991 kb on + strandat 2472.991 kb on + strandat 2472.999 kb on - strandat 2472.999 kb on - strandat 2472.999 kb on - strandat 2473.004 kb on - strand, within MPMX20_02347at 2473.075 kb on + strand, within MPMX20_02347at 2473.083 kb on - strand, within MPMX20_02347at 2473.083 kb on - strand, within MPMX20_02347at 2473.093 kb on - strand, within MPMX20_02347at 2473.110 kb on + strand, within MPMX20_02347at 2473.110 kb on + strand, within MPMX20_02347at 2473.110 kb on + strand, within MPMX20_02347at 2473.111 kb on + strand, within MPMX20_02347at 2473.118 kb on - strand, within MPMX20_02347at 2473.118 kb on - strand, within MPMX20_02347at 2473.118 kb on - strand, within MPMX20_02347at 2473.119 kb on - strand, within MPMX20_02347at 2473.120 kb on + strand, within MPMX20_02347at 2473.123 kb on - strand, within MPMX20_02347at 2473.128 kb on - strand, within MPMX20_02347at 2473.128 kb on - strand, within MPMX20_02347at 2473.128 kb on - strand, within MPMX20_02347at 2473.138 kb on - strand, within MPMX20_02347at 2473.140 kb on + strand, within MPMX20_02347at 2473.148 kb on - strand, within MPMX20_02347at 2473.152 kb on + strand, within MPMX20_02347at 2473.174 kb on - strand, within MPMX20_02347at 2473.187 kb on + strand, within MPMX20_02347at 2473.195 kb on - strand, within MPMX20_02347at 2473.294 kb on - strand, within MPMX20_02347at 2473.297 kb on + strand, within MPMX20_02347at 2473.305 kb on - strand, within MPMX20_02347at 2473.332 kb on + strand, within MPMX20_02347at 2473.376 kb on - strand, within MPMX20_02347at 2473.492 kb on + strand, within MPMX20_02347at 2473.500 kb on - strand, within MPMX20_02347at 2473.571 kb on - strand, within MPMX20_02347at 2473.681 kb on - strand, within MPMX20_02347at 2473.704 kb on - strand, within MPMX20_02347at 2473.746 kb on + strand, within MPMX20_02347at 2473.816 kb on + strandat 2473.873 kb on + strandat 2473.893 kb on - strandat 2473.915 kb on + strandat 2473.941 kb on + strandat 2473.941 kb on + strandat 2474.013 kb on - strandat 2474.091 kb on + strand, within MPMX20_02348at 2474.136 kb on + strand, within MPMX20_02348at 2474.144 kb on - strand, within MPMX20_02348at 2474.169 kb on + strand, within MPMX20_02348at 2474.237 kb on - strand, within MPMX20_02348at 2474.290 kb on + strand, within MPMX20_02348at 2474.298 kb on - strand, within MPMX20_02348at 2474.373 kb on + strand, within MPMX20_02348at 2474.438 kb on + strand, within MPMX20_02348at 2474.499 kb on + strand, within MPMX20_02348at 2474.499 kb on + strand, within MPMX20_02348at 2474.517 kb on - strand, within MPMX20_02348at 2474.568 kb on + strand, within MPMX20_02348at 2474.568 kb on + strand, within MPMX20_02348at 2474.642 kb on + strand, within MPMX20_02348at 2474.687 kb on + strand, within MPMX20_02348at 2474.687 kb on + strand, within MPMX20_02348at 2474.732 kb on + strand, within MPMX20_02348at 2474.740 kb on - strand, within MPMX20_02348at 2474.758 kb on - strand, within MPMX20_02348at 2474.790 kb on + strand, within MPMX20_02348at 2474.838 kb on + strand, within MPMX20_02348at 2474.840 kb on + strand, within MPMX20_02348at 2474.864 kb on + strand, within MPMX20_02348at 2474.912 kb on - strand, within MPMX20_02348

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 1X LB plate, Mixed culture; Bacillus haynesii TBS_113 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
remove
2,472,045 + MPMX20_02346 0.51 +0.2
2,472,045 + MPMX20_02346 0.51 +1.9
2,472,048 + MPMX20_02346 0.51 +0.1
2,472,053 - MPMX20_02346 0.52 -0.9
2,472,053 - MPMX20_02346 0.52 +0.1
2,472,217 + MPMX20_02346 0.62 +2.9
2,472,337 - MPMX20_02346 0.70 -0.0
2,472,355 - MPMX20_02346 0.71 -0.1
2,472,357 + MPMX20_02346 0.71 +0.4
2,472,365 - MPMX20_02346 0.72 +0.4
2,472,365 - MPMX20_02346 0.72 -1.1
2,472,365 - MPMX20_02346 0.72 +0.4
2,472,365 - MPMX20_02346 0.72 +1.6
2,472,417 - MPMX20_02346 0.75 -0.2
2,472,474 - MPMX20_02346 0.79 +1.9
2,472,474 - MPMX20_02346 0.79 -0.3
2,472,517 + MPMX20_02346 0.82 -1.1
2,472,541 + MPMX20_02346 0.83 +0.2
2,472,606 + MPMX20_02346 0.87 -1.0
2,472,607 + MPMX20_02346 0.87 -0.4
2,472,609 + MPMX20_02346 0.88 -0.7
2,472,614 + MPMX20_02346 0.88 -0.1
2,472,614 + MPMX20_02346 0.88 -1.2
2,472,615 - MPMX20_02346 0.88 -2.1
2,472,617 - MPMX20_02346 0.88 -0.7
2,472,617 - MPMX20_02346 0.88 -0.1
2,472,622 - MPMX20_02346 0.88 +0.6
2,472,627 + MPMX20_02346 0.89 -0.3
2,472,627 + MPMX20_02346 0.89 -0.5
2,472,628 + MPMX20_02346 0.89 +0.9
2,472,629 + MPMX20_02346 0.89 -1.2
2,472,635 - MPMX20_02346 0.89 +1.2
2,472,658 + +1.8
2,472,720 + -0.1
2,472,720 + +0.6
2,472,720 + -0.7
2,472,728 - +0.1
2,472,728 - -2.4
2,472,730 + -0.4
2,472,899 - -0.8
2,472,904 - -2.1
2,472,904 - -0.3
2,472,904 - +0.3
2,472,904 - -0.3
2,472,904 - +1.0
2,472,905 - +0.3
2,472,928 - +1.2
2,472,991 + +1.8
2,472,991 + -0.2
2,472,991 + +0.2
2,472,999 - -1.7
2,472,999 - +0.9
2,472,999 - +0.2
2,473,004 - MPMX20_02347 0.10 +1.5
2,473,075 + MPMX20_02347 0.17 +3.0
2,473,083 - MPMX20_02347 0.18 +1.4
2,473,083 - MPMX20_02347 0.18 +1.5
2,473,093 - MPMX20_02347 0.19 +1.1
2,473,110 + MPMX20_02347 0.21 +2.7
2,473,110 + MPMX20_02347 0.21 +1.8
2,473,110 + MPMX20_02347 0.21 -0.2
2,473,111 + MPMX20_02347 0.21 +0.6
2,473,118 - MPMX20_02347 0.22 -0.4
2,473,118 - MPMX20_02347 0.22 +1.0
2,473,118 - MPMX20_02347 0.22 +1.0
2,473,119 - MPMX20_02347 0.22 +0.8
2,473,120 + MPMX20_02347 0.22 +1.6
2,473,123 - MPMX20_02347 0.22 +1.3
2,473,128 - MPMX20_02347 0.23 +0.2
2,473,128 - MPMX20_02347 0.23 +0.9
2,473,128 - MPMX20_02347 0.23 +0.5
2,473,138 - MPMX20_02347 0.24 +1.7
2,473,140 + MPMX20_02347 0.24 +1.3
2,473,148 - MPMX20_02347 0.24 +0.4
2,473,152 + MPMX20_02347 0.25 +0.5
2,473,174 - MPMX20_02347 0.27 +0.3
2,473,187 + MPMX20_02347 0.28 +2.0
2,473,195 - MPMX20_02347 0.29 +1.2
2,473,294 - MPMX20_02347 0.39 +1.1
2,473,297 + MPMX20_02347 0.39 +0.1
2,473,305 - MPMX20_02347 0.40 +1.1
2,473,332 + MPMX20_02347 0.43 +1.3
2,473,376 - MPMX20_02347 0.47 +0.5
2,473,492 + MPMX20_02347 0.58 +0.8
2,473,500 - MPMX20_02347 0.59 +1.3
2,473,571 - MPMX20_02347 0.66 +0.3
2,473,681 - MPMX20_02347 0.77 +0.4
2,473,704 - MPMX20_02347 0.79 +1.9
2,473,746 + MPMX20_02347 0.83 +1.8
2,473,816 + +2.2
2,473,873 + +0.1
2,473,893 - +1.7
2,473,915 + +1.6
2,473,941 + +0.1
2,473,941 + +2.5
2,474,013 - -1.7
2,474,091 + MPMX20_02348 0.10 -0.3
2,474,136 + MPMX20_02348 0.14 +0.9
2,474,144 - MPMX20_02348 0.14 -0.7
2,474,169 + MPMX20_02348 0.16 -0.2
2,474,237 - MPMX20_02348 0.21 -0.1
2,474,290 + MPMX20_02348 0.25 -1.9
2,474,298 - MPMX20_02348 0.25 -1.0
2,474,373 + MPMX20_02348 0.30 -0.1
2,474,438 + MPMX20_02348 0.35 -0.8
2,474,499 + MPMX20_02348 0.39 -0.7
2,474,499 + MPMX20_02348 0.39 +0.2
2,474,517 - MPMX20_02348 0.41 +0.2
2,474,568 + MPMX20_02348 0.44 -0.6
2,474,568 + MPMX20_02348 0.44 -0.4
2,474,642 + MPMX20_02348 0.50 +0.5
2,474,687 + MPMX20_02348 0.53 -0.1
2,474,687 + MPMX20_02348 0.53 +0.3
2,474,732 + MPMX20_02348 0.56 -1.3
2,474,740 - MPMX20_02348 0.57 +2.0
2,474,758 - MPMX20_02348 0.58 -0.1
2,474,790 + MPMX20_02348 0.60 -0.7
2,474,838 + MPMX20_02348 0.64 -0.6
2,474,840 + MPMX20_02348 0.64 -0.3
2,474,864 + MPMX20_02348 0.65 -0.4
2,474,912 - MPMX20_02348 0.69 -0.7

Or see this region's nucleotide sequence