Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04649

Experiment: 0.1X LB plate, Mixed culture; Pseudomonas lini TBS_028 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_04648 and MPMX20_04649 overlap by 32 nucleotidesMPMX20_04649 and MPMX20_04650 are separated by 111 nucleotides MPMX20_04648: MPMX20_04648 - HTH-type transcriptional regulator YidZ, at 4,868,187 to 4,869,158 _04648 MPMX20_04649: MPMX20_04649 - Multidrug resistance protein MdtL, at 4,869,127 to 4,870,302 _04649 MPMX20_04650: MPMX20_04650 - tRNA modification GTPase MnmE, at 4,870,414 to 4,871,778 _04650 Position (kb) 4869 4870 4871Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 4868.155 kb on + strandat 4868.278 kb on - strandat 4868.283 kb on - strandat 4868.310 kb on + strand, within MPMX20_04648at 4868.325 kb on + strand, within MPMX20_04648at 4868.334 kb on + strand, within MPMX20_04648at 4868.356 kb on - strand, within MPMX20_04648at 4868.357 kb on + strand, within MPMX20_04648at 4868.385 kb on + strand, within MPMX20_04648at 4868.390 kb on - strand, within MPMX20_04648at 4868.393 kb on - strand, within MPMX20_04648at 4868.410 kb on + strand, within MPMX20_04648at 4868.441 kb on + strand, within MPMX20_04648at 4868.449 kb on - strand, within MPMX20_04648at 4868.456 kb on + strand, within MPMX20_04648at 4868.528 kb on + strand, within MPMX20_04648at 4868.536 kb on - strand, within MPMX20_04648at 4868.561 kb on - strand, within MPMX20_04648at 4868.570 kb on + strand, within MPMX20_04648at 4868.571 kb on + strand, within MPMX20_04648at 4868.571 kb on + strand, within MPMX20_04648at 4868.571 kb on + strand, within MPMX20_04648at 4868.636 kb on + strand, within MPMX20_04648at 4868.673 kb on - strand, within MPMX20_04648at 4868.701 kb on - strand, within MPMX20_04648at 4868.751 kb on + strand, within MPMX20_04648at 4868.759 kb on - strand, within MPMX20_04648at 4868.783 kb on + strand, within MPMX20_04648at 4868.791 kb on - strand, within MPMX20_04648at 4868.826 kb on - strand, within MPMX20_04648at 4868.873 kb on - strand, within MPMX20_04648at 4868.883 kb on - strand, within MPMX20_04648at 4868.883 kb on - strand, within MPMX20_04648at 4868.973 kb on - strand, within MPMX20_04648at 4868.976 kb on + strand, within MPMX20_04648at 4869.034 kb on + strand, within MPMX20_04648at 4869.059 kb on + strand, within MPMX20_04648at 4869.125 kb on + strandat 4869.139 kb on - strandat 4869.180 kb on + strandat 4869.187 kb on - strandat 4869.197 kb on - strandat 4869.207 kb on - strandat 4869.243 kb on + strandat 4869.243 kb on + strandat 4869.243 kb on + strandat 4869.243 kb on + strandat 4869.251 kb on - strand, within MPMX20_04649at 4869.251 kb on - strand, within MPMX20_04649at 4869.251 kb on - strand, within MPMX20_04649at 4869.287 kb on + strand, within MPMX20_04649at 4869.287 kb on + strand, within MPMX20_04649at 4869.287 kb on - strand, within MPMX20_04649at 4869.292 kb on + strand, within MPMX20_04649at 4869.295 kb on - strand, within MPMX20_04649at 4869.305 kb on - strand, within MPMX20_04649at 4869.319 kb on + strand, within MPMX20_04649at 4869.319 kb on + strand, within MPMX20_04649at 4869.327 kb on - strand, within MPMX20_04649at 4869.334 kb on - strand, within MPMX20_04649at 4869.351 kb on + strand, within MPMX20_04649at 4869.402 kb on + strand, within MPMX20_04649at 4869.405 kb on - strand, within MPMX20_04649at 4869.423 kb on + strand, within MPMX20_04649at 4869.439 kb on - strand, within MPMX20_04649at 4869.480 kb on + strand, within MPMX20_04649at 4869.482 kb on + strand, within MPMX20_04649at 4869.490 kb on - strand, within MPMX20_04649at 4869.509 kb on - strand, within MPMX20_04649at 4869.553 kb on - strand, within MPMX20_04649at 4869.575 kb on + strand, within MPMX20_04649at 4869.575 kb on + strand, within MPMX20_04649at 4869.575 kb on + strand, within MPMX20_04649at 4869.585 kb on - strand, within MPMX20_04649at 4869.630 kb on + strand, within MPMX20_04649at 4869.666 kb on - strand, within MPMX20_04649at 4869.671 kb on - strand, within MPMX20_04649at 4869.717 kb on + strand, within MPMX20_04649at 4869.717 kb on + strand, within MPMX20_04649at 4869.723 kb on + strand, within MPMX20_04649at 4869.725 kb on - strand, within MPMX20_04649at 4869.725 kb on - strand, within MPMX20_04649at 4869.750 kb on + strand, within MPMX20_04649at 4869.796 kb on - strand, within MPMX20_04649at 4869.818 kb on + strand, within MPMX20_04649at 4869.826 kb on - strand, within MPMX20_04649at 4869.895 kb on + strand, within MPMX20_04649at 4869.902 kb on - strand, within MPMX20_04649at 4870.016 kb on + strand, within MPMX20_04649at 4870.024 kb on - strand, within MPMX20_04649at 4870.026 kb on + strand, within MPMX20_04649at 4870.028 kb on + strand, within MPMX20_04649at 4870.033 kb on + strand, within MPMX20_04649at 4870.036 kb on - strand, within MPMX20_04649at 4870.041 kb on - strand, within MPMX20_04649at 4870.053 kb on + strand, within MPMX20_04649at 4870.054 kb on - strand, within MPMX20_04649at 4870.061 kb on - strand, within MPMX20_04649at 4870.084 kb on + strand, within MPMX20_04649at 4870.092 kb on - strand, within MPMX20_04649at 4870.298 kb on + strandat 4870.424 kb on + strandat 4870.498 kb on - strandat 4870.536 kb on + strandat 4870.561 kb on + strand, within MPMX20_04650at 4870.564 kb on - strand, within MPMX20_04650at 4870.649 kb on + strand, within MPMX20_04650at 4870.659 kb on + strand, within MPMX20_04650at 4870.759 kb on + strand, within MPMX20_04650at 4870.826 kb on + strand, within MPMX20_04650at 4870.826 kb on + strand, within MPMX20_04650at 4871.027 kb on - strand, within MPMX20_04650at 4871.083 kb on - strand, within MPMX20_04650at 4871.107 kb on - strand, within MPMX20_04650at 4871.157 kb on - strand, within MPMX20_04650at 4871.159 kb on + strand, within MPMX20_04650at 4871.197 kb on + strand, within MPMX20_04650

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Per-strain Table

Position Strand Gene LocusTag Fraction 0.1X LB plate, Mixed culture; Pseudomonas lini TBS_028 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
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4,868,155 + -2.1
4,868,278 - -0.1
4,868,283 - -2.7
4,868,310 + MPMX20_04648 0.13 -0.1
4,868,325 + MPMX20_04648 0.14 -1.4
4,868,334 + MPMX20_04648 0.15 -1.9
4,868,356 - MPMX20_04648 0.17 -1.2
4,868,357 + MPMX20_04648 0.17 -1.4
4,868,385 + MPMX20_04648 0.20 -1.6
4,868,390 - MPMX20_04648 0.21 -2.8
4,868,393 - MPMX20_04648 0.21 +0.5
4,868,410 + MPMX20_04648 0.23 +1.1
4,868,441 + MPMX20_04648 0.26 +0.7
4,868,449 - MPMX20_04648 0.27 +0.1
4,868,456 + MPMX20_04648 0.28 -2.0
4,868,528 + MPMX20_04648 0.35 +0.4
4,868,536 - MPMX20_04648 0.36 +0.5
4,868,561 - MPMX20_04648 0.38 +3.6
4,868,570 + MPMX20_04648 0.39 +0.1
4,868,571 + MPMX20_04648 0.40 -0.3
4,868,571 + MPMX20_04648 0.40 +0.4
4,868,571 + MPMX20_04648 0.40 +1.7
4,868,636 + MPMX20_04648 0.46 -2.6
4,868,673 - MPMX20_04648 0.50 +0.7
4,868,701 - MPMX20_04648 0.53 +0.0
4,868,751 + MPMX20_04648 0.58 -0.7
4,868,759 - MPMX20_04648 0.59 -0.6
4,868,783 + MPMX20_04648 0.61 +0.3
4,868,791 - MPMX20_04648 0.62 +0.5
4,868,826 - MPMX20_04648 0.66 -3.4
4,868,873 - MPMX20_04648 0.71 -0.4
4,868,883 - MPMX20_04648 0.72 -0.1
4,868,883 - MPMX20_04648 0.72 +0.3
4,868,973 - MPMX20_04648 0.81 -1.4
4,868,976 + MPMX20_04648 0.81 -0.2
4,869,034 + MPMX20_04648 0.87 -2.4
4,869,059 + MPMX20_04648 0.90 +0.1
4,869,125 + +0.2
4,869,139 - -1.6
4,869,180 + -1.2
4,869,187 - +0.7
4,869,197 - -1.0
4,869,207 - -1.4
4,869,243 + -2.3
4,869,243 + -0.7
4,869,243 + -1.1
4,869,243 + -1.4
4,869,251 - MPMX20_04649 0.11 -3.7
4,869,251 - MPMX20_04649 0.11 -0.8
4,869,251 - MPMX20_04649 0.11 -0.2
4,869,287 + MPMX20_04649 0.14 -2.3
4,869,287 + MPMX20_04649 0.14 +0.4
4,869,287 - MPMX20_04649 0.14 +0.7
4,869,292 + MPMX20_04649 0.14 -1.5
4,869,295 - MPMX20_04649 0.14 -0.9
4,869,305 - MPMX20_04649 0.15 -0.9
4,869,319 + MPMX20_04649 0.16 -0.1
4,869,319 + MPMX20_04649 0.16 +1.2
4,869,327 - MPMX20_04649 0.17 -0.3
4,869,334 - MPMX20_04649 0.18 -0.3
4,869,351 + MPMX20_04649 0.19 -3.3
4,869,402 + MPMX20_04649 0.23 +0.7
4,869,405 - MPMX20_04649 0.24 +1.2
4,869,423 + MPMX20_04649 0.25 +0.3
4,869,439 - MPMX20_04649 0.27 +1.5
4,869,480 + MPMX20_04649 0.30 -1.1
4,869,482 + MPMX20_04649 0.30 +0.8
4,869,490 - MPMX20_04649 0.31 -3.4
4,869,509 - MPMX20_04649 0.32 +0.5
4,869,553 - MPMX20_04649 0.36 -0.1
4,869,575 + MPMX20_04649 0.38 -2.1
4,869,575 + MPMX20_04649 0.38 -2.5
4,869,575 + MPMX20_04649 0.38 -0.6
4,869,585 - MPMX20_04649 0.39 -0.3
4,869,630 + MPMX20_04649 0.43 -0.9
4,869,666 - MPMX20_04649 0.46 +0.3
4,869,671 - MPMX20_04649 0.46 -0.2
4,869,717 + MPMX20_04649 0.50 -1.4
4,869,717 + MPMX20_04649 0.50 -2.4
4,869,723 + MPMX20_04649 0.51 +1.7
4,869,725 - MPMX20_04649 0.51 +2.3
4,869,725 - MPMX20_04649 0.51 -1.2
4,869,750 + MPMX20_04649 0.53 -0.1
4,869,796 - MPMX20_04649 0.57 +0.4
4,869,818 + MPMX20_04649 0.59 +0.7
4,869,826 - MPMX20_04649 0.59 +0.0
4,869,895 + MPMX20_04649 0.65 -0.9
4,869,902 - MPMX20_04649 0.66 -0.9
4,870,016 + MPMX20_04649 0.76 -0.8
4,870,024 - MPMX20_04649 0.76 -1.2
4,870,026 + MPMX20_04649 0.76 +2.0
4,870,028 + MPMX20_04649 0.77 -0.7
4,870,033 + MPMX20_04649 0.77 +0.1
4,870,036 - MPMX20_04649 0.77 -1.3
4,870,041 - MPMX20_04649 0.78 -0.9
4,870,053 + MPMX20_04649 0.79 +0.7
4,870,054 - MPMX20_04649 0.79 -2.7
4,870,061 - MPMX20_04649 0.79 -0.9
4,870,084 + MPMX20_04649 0.81 +2.2
4,870,092 - MPMX20_04649 0.82 -1.1
4,870,298 + -1.3
4,870,424 + -1.4
4,870,498 - +3.6
4,870,536 + +3.1
4,870,561 + MPMX20_04650 0.11 +5.4
4,870,564 - MPMX20_04650 0.11 -0.6
4,870,649 + MPMX20_04650 0.17 +1.3
4,870,659 + MPMX20_04650 0.18 +2.3
4,870,759 + MPMX20_04650 0.25 -0.3
4,870,826 + MPMX20_04650 0.30 +2.7
4,870,826 + MPMX20_04650 0.30 +2.1
4,871,027 - MPMX20_04650 0.45 -0.6
4,871,083 - MPMX20_04650 0.49 +5.1
4,871,107 - MPMX20_04650 0.51 +0.7
4,871,157 - MPMX20_04650 0.54 +3.4
4,871,159 + MPMX20_04650 0.55 +4.3
4,871,197 + MPMX20_04650 0.57 -1.4

Or see this region's nucleotide sequence