Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04339

Experiment: 0.1X LB plate, Mixed culture; Pseudomonas lini TBS_028 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_04338 and MPMX20_04339 are separated by 251 nucleotidesMPMX20_04339 and MPMX20_04340 overlap by 8 nucleotidesMPMX20_04340 and MPMX20_04341 are separated by 2 nucleotides MPMX20_04338: MPMX20_04338 - RNA polymerase sigma factor RpoH, at 4,533,126 to 4,533,983 _04338 MPMX20_04339: MPMX20_04339 - Cell division protein FtsX, at 4,534,235 to 4,535,290 _04339 MPMX20_04340: MPMX20_04340 - Cell division ATP-binding protein FtsE, at 4,535,283 to 4,535,948 _04340 MPMX20_04341: MPMX20_04341 - Signal recognition particle receptor FtsY, at 4,535,951 to 4,537,417 _04341 Position (kb) 4534 4535 4536Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 4533.912 kb on - strandat 4534.015 kb on - strandat 4534.025 kb on - strandat 4534.035 kb on - strandat 4534.161 kb on - strandat 4534.201 kb on + strandat 4534.201 kb on + strandat 4534.269 kb on + strandat 4534.277 kb on - strandat 4534.277 kb on - strandat 4534.277 kb on - strandat 4534.277 kb on - strandat 4534.277 kb on - strandat 4534.277 kb on - strandat 4534.300 kb on - strandat 4534.300 kb on - strandat 4534.385 kb on + strand, within MPMX20_04339at 4534.478 kb on - strand, within MPMX20_04339at 4534.489 kb on + strand, within MPMX20_04339at 4534.558 kb on + strand, within MPMX20_04339at 4534.634 kb on - strand, within MPMX20_04339at 4534.795 kb on + strand, within MPMX20_04339at 4534.803 kb on - strand, within MPMX20_04339at 4534.805 kb on + strand, within MPMX20_04339at 4534.813 kb on - strand, within MPMX20_04339at 4534.817 kb on + strand, within MPMX20_04339at 4534.817 kb on + strand, within MPMX20_04339at 4534.822 kb on + strand, within MPMX20_04339at 4534.825 kb on - strand, within MPMX20_04339at 4534.844 kb on + strand, within MPMX20_04339at 4534.886 kb on + strand, within MPMX20_04339at 4534.941 kb on + strand, within MPMX20_04339at 4534.956 kb on + strand, within MPMX20_04339at 4534.956 kb on + strand, within MPMX20_04339at 4534.964 kb on - strand, within MPMX20_04339at 4534.974 kb on + strand, within MPMX20_04339at 4534.974 kb on + strand, within MPMX20_04339at 4534.974 kb on + strand, within MPMX20_04339at 4534.974 kb on + strand, within MPMX20_04339at 4534.974 kb on + strand, within MPMX20_04339at 4534.974 kb on + strand, within MPMX20_04339at 4534.974 kb on + strand, within MPMX20_04339at 4534.977 kb on - strand, within MPMX20_04339at 4534.977 kb on - strand, within MPMX20_04339at 4534.982 kb on - strand, within MPMX20_04339at 4534.982 kb on - strand, within MPMX20_04339at 4534.982 kb on - strand, within MPMX20_04339at 4535.043 kb on - strand, within MPMX20_04339at 4535.099 kb on + strand, within MPMX20_04339at 4535.111 kb on + strand, within MPMX20_04339at 4535.373 kb on + strand, within MPMX20_04340at 4535.381 kb on + strand, within MPMX20_04340at 4535.490 kb on - strand, within MPMX20_04340at 4535.530 kb on - strand, within MPMX20_04340at 4535.583 kb on - strand, within MPMX20_04340at 4535.583 kb on - strand, within MPMX20_04340at 4535.607 kb on + strand, within MPMX20_04340at 4535.612 kb on + strand, within MPMX20_04340at 4535.655 kb on + strand, within MPMX20_04340at 4535.756 kb on - strand, within MPMX20_04340at 4535.756 kb on - strand, within MPMX20_04340at 4535.809 kb on + strand, within MPMX20_04340at 4535.843 kb on + strand, within MPMX20_04340at 4535.876 kb on + strand, within MPMX20_04340at 4535.884 kb on - strandat 4535.899 kb on + strandat 4535.922 kb on - strandat 4535.931 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 0.1X LB plate, Mixed culture; Pseudomonas lini TBS_028 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
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4,533,912 - +1.2
4,534,015 - -2.1
4,534,025 - -2.4
4,534,035 - +0.2
4,534,161 - -1.3
4,534,201 + -0.8
4,534,201 + -0.9
4,534,269 + -2.6
4,534,277 - -0.8
4,534,277 - +0.8
4,534,277 - +1.8
4,534,277 - +0.6
4,534,277 - -1.1
4,534,277 - -0.6
4,534,300 - +1.6
4,534,300 - -4.2
4,534,385 + MPMX20_04339 0.14 -2.9
4,534,478 - MPMX20_04339 0.23 -2.7
4,534,489 + MPMX20_04339 0.24 -4.5
4,534,558 + MPMX20_04339 0.31 -2.4
4,534,634 - MPMX20_04339 0.38 -0.2
4,534,795 + MPMX20_04339 0.53 -2.8
4,534,803 - MPMX20_04339 0.54 -2.8
4,534,805 + MPMX20_04339 0.54 -4.6
4,534,813 - MPMX20_04339 0.55 -3.1
4,534,817 + MPMX20_04339 0.55 -3.9
4,534,817 + MPMX20_04339 0.55 -3.7
4,534,822 + MPMX20_04339 0.56 +0.2
4,534,825 - MPMX20_04339 0.56 -3.5
4,534,844 + MPMX20_04339 0.58 -1.0
4,534,886 + MPMX20_04339 0.62 -0.1
4,534,941 + MPMX20_04339 0.67 -2.8
4,534,956 + MPMX20_04339 0.68 -2.5
4,534,956 + MPMX20_04339 0.68 -2.1
4,534,964 - MPMX20_04339 0.69 -3.3
4,534,974 + MPMX20_04339 0.70 -4.1
4,534,974 + MPMX20_04339 0.70 -0.2
4,534,974 + MPMX20_04339 0.70 -0.5
4,534,974 + MPMX20_04339 0.70 +1.8
4,534,974 + MPMX20_04339 0.70 -1.5
4,534,974 + MPMX20_04339 0.70 -1.0
4,534,974 + MPMX20_04339 0.70 -5.1
4,534,977 - MPMX20_04339 0.70 +0.8
4,534,977 - MPMX20_04339 0.70 -3.0
4,534,982 - MPMX20_04339 0.71 -2.2
4,534,982 - MPMX20_04339 0.71 -4.0
4,534,982 - MPMX20_04339 0.71 -2.8
4,535,043 - MPMX20_04339 0.77 -4.2
4,535,099 + MPMX20_04339 0.82 -0.2
4,535,111 + MPMX20_04339 0.83 -2.2
4,535,373 + MPMX20_04340 0.14 -2.2
4,535,381 + MPMX20_04340 0.15 -1.6
4,535,490 - MPMX20_04340 0.31 -2.9
4,535,530 - MPMX20_04340 0.37 -2.6
4,535,583 - MPMX20_04340 0.45 -1.9
4,535,583 - MPMX20_04340 0.45 -1.6
4,535,607 + MPMX20_04340 0.49 -2.5
4,535,612 + MPMX20_04340 0.49 -2.9
4,535,655 + MPMX20_04340 0.56 -2.6
4,535,756 - MPMX20_04340 0.71 -0.5
4,535,756 - MPMX20_04340 0.71 -2.6
4,535,809 + MPMX20_04340 0.79 -2.1
4,535,843 + MPMX20_04340 0.84 -3.3
4,535,876 + MPMX20_04340 0.89 -3.7
4,535,884 - -1.6
4,535,899 + +1.8
4,535,922 - -4.1
4,535,931 - -1.2

Or see this region's nucleotide sequence