Experiment: 0.1X LB plate, Mixed culture; Pseudomonas lini TBS_028 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03870 and MPMX20_03871 are separated by 5 nucleotides MPMX20_03871 and MPMX20_03872 overlap by 4 nucleotides MPMX20_03872 and MPMX20_03873 are separated by 6 nucleotides
MPMX20_03870: MPMX20_03870 - HTH-type transcriptional activator RhaS, at 4,078,083 to 4,078,922
_03870
MPMX20_03871: MPMX20_03871 - hypothetical protein, at 4,078,928 to 4,079,815
_03871
MPMX20_03872: MPMX20_03872 - Iron(3+)-hydroxamate-binding protein FhuD, at 4,079,812 to 4,080,765
_03872
MPMX20_03873: MPMX20_03873 - Iron-uptake system permease protein FeuC, at 4,080,772 to 4,081,812
_03873
Position (kb)
4078
4079
4080 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 4077.973 kb on - strand at 4078.081 kb on - strand at 4078.131 kb on - strand at 4078.182 kb on - strand, within MPMX20_03870 at 4078.188 kb on + strand, within MPMX20_03870 at 4078.257 kb on + strand, within MPMX20_03870 at 4078.291 kb on + strand, within MPMX20_03870 at 4078.299 kb on - strand, within MPMX20_03870 at 4078.301 kb on + strand, within MPMX20_03870 at 4078.301 kb on + strand, within MPMX20_03870 at 4078.301 kb on + strand, within MPMX20_03870 at 4078.308 kb on - strand, within MPMX20_03870 at 4078.309 kb on - strand, within MPMX20_03870 at 4078.319 kb on + strand, within MPMX20_03870 at 4078.335 kb on + strand, within MPMX20_03870 at 4078.416 kb on + strand, within MPMX20_03870 at 4078.453 kb on - strand, within MPMX20_03870 at 4078.466 kb on - strand, within MPMX20_03870 at 4078.466 kb on - strand, within MPMX20_03870 at 4078.512 kb on + strand, within MPMX20_03870 at 4078.584 kb on + strand, within MPMX20_03870 at 4078.584 kb on + strand, within MPMX20_03870 at 4078.605 kb on - strand, within MPMX20_03870 at 4078.605 kb on - strand, within MPMX20_03870 at 4078.635 kb on - strand, within MPMX20_03870 at 4078.672 kb on + strand, within MPMX20_03870 at 4078.672 kb on + strand, within MPMX20_03870 at 4078.704 kb on - strand, within MPMX20_03870 at 4078.736 kb on + strand, within MPMX20_03870 at 4078.736 kb on + strand, within MPMX20_03870 at 4078.756 kb on + strand, within MPMX20_03870 at 4078.756 kb on + strand, within MPMX20_03870 at 4078.764 kb on - strand, within MPMX20_03870 at 4078.924 kb on + strand at 4078.929 kb on + strand at 4078.932 kb on - strand at 4078.945 kb on - strand at 4078.948 kb on + strand at 4078.948 kb on + strand at 4078.948 kb on + strand at 4078.987 kb on + strand at 4078.987 kb on + strand at 4079.016 kb on - strand at 4079.035 kb on + strand, within MPMX20_03871 at 4079.045 kb on + strand, within MPMX20_03871 at 4079.045 kb on + strand, within MPMX20_03871 at 4079.053 kb on - strand, within MPMX20_03871 at 4079.053 kb on - strand, within MPMX20_03871 at 4079.053 kb on - strand, within MPMX20_03871 at 4079.053 kb on - strand, within MPMX20_03871 at 4079.053 kb on - strand, within MPMX20_03871 at 4079.053 kb on - strand, within MPMX20_03871 at 4079.063 kb on - strand, within MPMX20_03871 at 4079.095 kb on + strand, within MPMX20_03871 at 4079.145 kb on - strand, within MPMX20_03871 at 4079.181 kb on + strand, within MPMX20_03871 at 4079.229 kb on + strand, within MPMX20_03871 at 4079.260 kb on - strand, within MPMX20_03871 at 4079.260 kb on - strand, within MPMX20_03871 at 4079.267 kb on - strand, within MPMX20_03871 at 4079.274 kb on + strand, within MPMX20_03871 at 4079.291 kb on - strand, within MPMX20_03871 at 4079.330 kb on - strand, within MPMX20_03871 at 4079.332 kb on + strand, within MPMX20_03871 at 4079.340 kb on - strand, within MPMX20_03871 at 4079.340 kb on - strand, within MPMX20_03871 at 4079.462 kb on + strand, within MPMX20_03871 at 4079.506 kb on + strand, within MPMX20_03871 at 4079.506 kb on + strand, within MPMX20_03871 at 4079.520 kb on + strand, within MPMX20_03871 at 4079.575 kb on + strand, within MPMX20_03871 at 4079.587 kb on + strand, within MPMX20_03871 at 4079.587 kb on + strand, within MPMX20_03871 at 4079.620 kb on + strand, within MPMX20_03871 at 4079.635 kb on + strand, within MPMX20_03871 at 4079.636 kb on - strand, within MPMX20_03871 at 4079.727 kb on + strand at 4079.735 kb on - strand at 4079.786 kb on - strand at 4079.822 kb on + strand at 4079.864 kb on - strand at 4079.874 kb on + strand at 4079.882 kb on - strand at 4079.882 kb on - strand at 4080.056 kb on + strand, within MPMX20_03872 at 4080.074 kb on + strand, within MPMX20_03872 at 4080.077 kb on - strand, within MPMX20_03872 at 4080.082 kb on - strand, within MPMX20_03872 at 4080.115 kb on - strand, within MPMX20_03872 at 4080.115 kb on - strand, within MPMX20_03872 at 4080.147 kb on + strand, within MPMX20_03872 at 4080.179 kb on + strand, within MPMX20_03872 at 4080.251 kb on + strand, within MPMX20_03872 at 4080.259 kb on - strand, within MPMX20_03872 at 4080.261 kb on + strand, within MPMX20_03872 at 4080.261 kb on - strand, within MPMX20_03872 at 4080.264 kb on + strand, within MPMX20_03872 at 4080.284 kb on - strand, within MPMX20_03872 at 4080.313 kb on - strand, within MPMX20_03872 at 4080.313 kb on - strand, within MPMX20_03872 at 4080.365 kb on - strand, within MPMX20_03872 at 4080.420 kb on - strand, within MPMX20_03872 at 4080.425 kb on - strand, within MPMX20_03872 at 4080.471 kb on + strand, within MPMX20_03872 at 4080.626 kb on - strand, within MPMX20_03872 at 4080.671 kb on - strand at 4080.676 kb on + strand at 4080.702 kb on - strand at 4080.720 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 0.1X LB plate, Mixed culture; Pseudomonas lini TBS_028 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct remove 4,077,973 - -2.0 4,078,081 - +0.0 4,078,131 - -0.3 4,078,182 - MPMX20_03870 0.12 -0.8 4,078,188 + MPMX20_03870 0.12 -3.3 4,078,257 + MPMX20_03870 0.21 +0.4 4,078,291 + MPMX20_03870 0.25 -2.8 4,078,299 - MPMX20_03870 0.26 +0.2 4,078,301 + MPMX20_03870 0.26 -0.9 4,078,301 + MPMX20_03870 0.26 -0.2 4,078,301 + MPMX20_03870 0.26 +0.6 4,078,308 - MPMX20_03870 0.27 -0.9 4,078,309 - MPMX20_03870 0.27 +0.7 4,078,319 + MPMX20_03870 0.28 -3.9 4,078,335 + MPMX20_03870 0.30 -1.2 4,078,416 + MPMX20_03870 0.40 -3.2 4,078,453 - MPMX20_03870 0.44 +0.9 4,078,466 - MPMX20_03870 0.46 -0.6 4,078,466 - MPMX20_03870 0.46 -1.3 4,078,512 + MPMX20_03870 0.51 +1.6 4,078,584 + MPMX20_03870 0.60 +0.9 4,078,584 + MPMX20_03870 0.60 -0.1 4,078,605 - MPMX20_03870 0.62 -1.0 4,078,605 - MPMX20_03870 0.62 +0.4 4,078,635 - MPMX20_03870 0.66 -0.7 4,078,672 + MPMX20_03870 0.70 -2.4 4,078,672 + MPMX20_03870 0.70 -1.6 4,078,704 - MPMX20_03870 0.74 +0.6 4,078,736 + MPMX20_03870 0.78 -2.1 4,078,736 + MPMX20_03870 0.78 -0.1 4,078,756 + MPMX20_03870 0.80 -0.7 4,078,756 + MPMX20_03870 0.80 -2.9 4,078,764 - MPMX20_03870 0.81 -0.4 4,078,924 + +1.4 4,078,929 + -0.1 4,078,932 - +0.2 4,078,945 - -0.5 4,078,948 + +1.9 4,078,948 + -0.9 4,078,948 + -0.9 4,078,987 + -2.0 4,078,987 + -2.0 4,079,016 - -1.5 4,079,035 + MPMX20_03871 0.12 -3.6 4,079,045 + MPMX20_03871 0.13 -1.2 4,079,045 + MPMX20_03871 0.13 +1.9 4,079,053 - MPMX20_03871 0.14 -0.4 4,079,053 - MPMX20_03871 0.14 +2.3 4,079,053 - MPMX20_03871 0.14 -3.7 4,079,053 - MPMX20_03871 0.14 -1.0 4,079,053 - MPMX20_03871 0.14 -2.0 4,079,053 - MPMX20_03871 0.14 -1.3 4,079,063 - MPMX20_03871 0.15 -1.1 4,079,095 + MPMX20_03871 0.19 -0.6 4,079,145 - MPMX20_03871 0.24 +0.4 4,079,181 + MPMX20_03871 0.28 -2.3 4,079,229 + MPMX20_03871 0.34 -0.8 4,079,260 - MPMX20_03871 0.37 -0.3 4,079,260 - MPMX20_03871 0.37 +0.0 4,079,267 - MPMX20_03871 0.38 -1.1 4,079,274 + MPMX20_03871 0.39 -0.7 4,079,291 - MPMX20_03871 0.41 +0.4 4,079,330 - MPMX20_03871 0.45 -0.8 4,079,332 + MPMX20_03871 0.45 +0.4 4,079,340 - MPMX20_03871 0.46 +3.6 4,079,340 - MPMX20_03871 0.46 -1.2 4,079,462 + MPMX20_03871 0.60 -2.1 4,079,506 + MPMX20_03871 0.65 +0.5 4,079,506 + MPMX20_03871 0.65 +0.5 4,079,520 + MPMX20_03871 0.67 -1.4 4,079,575 + MPMX20_03871 0.73 +0.5 4,079,587 + MPMX20_03871 0.74 -0.4 4,079,587 + MPMX20_03871 0.74 -0.8 4,079,620 + MPMX20_03871 0.78 -1.5 4,079,635 + MPMX20_03871 0.80 -0.4 4,079,636 - MPMX20_03871 0.80 +0.2 4,079,727 + -1.6 4,079,735 - +0.4 4,079,786 - -0.6 4,079,822 + -0.6 4,079,864 - -0.5 4,079,874 + -2.7 4,079,882 - +2.9 4,079,882 - -1.5 4,080,056 + MPMX20_03872 0.26 +1.1 4,080,074 + MPMX20_03872 0.27 +0.2 4,080,077 - MPMX20_03872 0.28 -0.1 4,080,082 - MPMX20_03872 0.28 -2.0 4,080,115 - MPMX20_03872 0.32 -3.1 4,080,115 - MPMX20_03872 0.32 -2.1 4,080,147 + MPMX20_03872 0.35 -0.9 4,080,179 + MPMX20_03872 0.38 +0.4 4,080,251 + MPMX20_03872 0.46 -0.5 4,080,259 - MPMX20_03872 0.47 +0.0 4,080,261 + MPMX20_03872 0.47 -1.4 4,080,261 - MPMX20_03872 0.47 -0.1 4,080,264 + MPMX20_03872 0.47 -0.1 4,080,284 - MPMX20_03872 0.49 -2.4 4,080,313 - MPMX20_03872 0.53 -0.9 4,080,313 - MPMX20_03872 0.53 -3.4 4,080,365 - MPMX20_03872 0.58 -0.2 4,080,420 - MPMX20_03872 0.64 -1.1 4,080,425 - MPMX20_03872 0.64 +3.8 4,080,471 + MPMX20_03872 0.69 -1.5 4,080,626 - MPMX20_03872 0.85 -0.6 4,080,671 - +0.4 4,080,676 + -0.6 4,080,702 - -1.1 4,080,720 + +0.9
Or see this region's nucleotide sequence