Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03871

Experiment: 0.1X LB plate, Mixed culture; Pseudomonas lini TBS_028 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03870 and MPMX20_03871 are separated by 5 nucleotidesMPMX20_03871 and MPMX20_03872 overlap by 4 nucleotidesMPMX20_03872 and MPMX20_03873 are separated by 6 nucleotides MPMX20_03870: MPMX20_03870 - HTH-type transcriptional activator RhaS, at 4,078,083 to 4,078,922 _03870 MPMX20_03871: MPMX20_03871 - hypothetical protein, at 4,078,928 to 4,079,815 _03871 MPMX20_03872: MPMX20_03872 - Iron(3+)-hydroxamate-binding protein FhuD, at 4,079,812 to 4,080,765 _03872 MPMX20_03873: MPMX20_03873 - Iron-uptake system permease protein FeuC, at 4,080,772 to 4,081,812 _03873 Position (kb) 4078 4079 4080Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 4077.973 kb on - strandat 4078.081 kb on - strandat 4078.131 kb on - strandat 4078.182 kb on - strand, within MPMX20_03870at 4078.188 kb on + strand, within MPMX20_03870at 4078.257 kb on + strand, within MPMX20_03870at 4078.291 kb on + strand, within MPMX20_03870at 4078.299 kb on - strand, within MPMX20_03870at 4078.301 kb on + strand, within MPMX20_03870at 4078.301 kb on + strand, within MPMX20_03870at 4078.301 kb on + strand, within MPMX20_03870at 4078.308 kb on - strand, within MPMX20_03870at 4078.309 kb on - strand, within MPMX20_03870at 4078.319 kb on + strand, within MPMX20_03870at 4078.335 kb on + strand, within MPMX20_03870at 4078.416 kb on + strand, within MPMX20_03870at 4078.453 kb on - strand, within MPMX20_03870at 4078.466 kb on - strand, within MPMX20_03870at 4078.466 kb on - strand, within MPMX20_03870at 4078.512 kb on + strand, within MPMX20_03870at 4078.584 kb on + strand, within MPMX20_03870at 4078.584 kb on + strand, within MPMX20_03870at 4078.605 kb on - strand, within MPMX20_03870at 4078.605 kb on - strand, within MPMX20_03870at 4078.635 kb on - strand, within MPMX20_03870at 4078.672 kb on + strand, within MPMX20_03870at 4078.672 kb on + strand, within MPMX20_03870at 4078.704 kb on - strand, within MPMX20_03870at 4078.736 kb on + strand, within MPMX20_03870at 4078.736 kb on + strand, within MPMX20_03870at 4078.756 kb on + strand, within MPMX20_03870at 4078.756 kb on + strand, within MPMX20_03870at 4078.764 kb on - strand, within MPMX20_03870at 4078.924 kb on + strandat 4078.929 kb on + strandat 4078.932 kb on - strandat 4078.945 kb on - strandat 4078.948 kb on + strandat 4078.948 kb on + strandat 4078.948 kb on + strandat 4078.987 kb on + strandat 4078.987 kb on + strandat 4079.016 kb on - strandat 4079.035 kb on + strand, within MPMX20_03871at 4079.045 kb on + strand, within MPMX20_03871at 4079.045 kb on + strand, within MPMX20_03871at 4079.053 kb on - strand, within MPMX20_03871at 4079.053 kb on - strand, within MPMX20_03871at 4079.053 kb on - strand, within MPMX20_03871at 4079.053 kb on - strand, within MPMX20_03871at 4079.053 kb on - strand, within MPMX20_03871at 4079.053 kb on - strand, within MPMX20_03871at 4079.063 kb on - strand, within MPMX20_03871at 4079.095 kb on + strand, within MPMX20_03871at 4079.145 kb on - strand, within MPMX20_03871at 4079.181 kb on + strand, within MPMX20_03871at 4079.229 kb on + strand, within MPMX20_03871at 4079.260 kb on - strand, within MPMX20_03871at 4079.260 kb on - strand, within MPMX20_03871at 4079.267 kb on - strand, within MPMX20_03871at 4079.274 kb on + strand, within MPMX20_03871at 4079.291 kb on - strand, within MPMX20_03871at 4079.330 kb on - strand, within MPMX20_03871at 4079.332 kb on + strand, within MPMX20_03871at 4079.340 kb on - strand, within MPMX20_03871at 4079.340 kb on - strand, within MPMX20_03871at 4079.462 kb on + strand, within MPMX20_03871at 4079.506 kb on + strand, within MPMX20_03871at 4079.506 kb on + strand, within MPMX20_03871at 4079.520 kb on + strand, within MPMX20_03871at 4079.575 kb on + strand, within MPMX20_03871at 4079.587 kb on + strand, within MPMX20_03871at 4079.587 kb on + strand, within MPMX20_03871at 4079.620 kb on + strand, within MPMX20_03871at 4079.635 kb on + strand, within MPMX20_03871at 4079.636 kb on - strand, within MPMX20_03871at 4079.727 kb on + strandat 4079.735 kb on - strandat 4079.786 kb on - strandat 4079.822 kb on + strandat 4079.864 kb on - strandat 4079.874 kb on + strandat 4079.882 kb on - strandat 4079.882 kb on - strandat 4080.056 kb on + strand, within MPMX20_03872at 4080.074 kb on + strand, within MPMX20_03872at 4080.077 kb on - strand, within MPMX20_03872at 4080.082 kb on - strand, within MPMX20_03872at 4080.115 kb on - strand, within MPMX20_03872at 4080.115 kb on - strand, within MPMX20_03872at 4080.147 kb on + strand, within MPMX20_03872at 4080.179 kb on + strand, within MPMX20_03872at 4080.251 kb on + strand, within MPMX20_03872at 4080.259 kb on - strand, within MPMX20_03872at 4080.261 kb on + strand, within MPMX20_03872at 4080.261 kb on - strand, within MPMX20_03872at 4080.264 kb on + strand, within MPMX20_03872at 4080.284 kb on - strand, within MPMX20_03872at 4080.313 kb on - strand, within MPMX20_03872at 4080.313 kb on - strand, within MPMX20_03872at 4080.365 kb on - strand, within MPMX20_03872at 4080.420 kb on - strand, within MPMX20_03872at 4080.425 kb on - strand, within MPMX20_03872at 4080.471 kb on + strand, within MPMX20_03872at 4080.626 kb on - strand, within MPMX20_03872at 4080.671 kb on - strandat 4080.676 kb on + strandat 4080.702 kb on - strandat 4080.720 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 0.1X LB plate, Mixed culture; Pseudomonas lini TBS_028 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
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4,077,973 - -2.0
4,078,081 - +0.0
4,078,131 - -0.3
4,078,182 - MPMX20_03870 0.12 -0.8
4,078,188 + MPMX20_03870 0.12 -3.3
4,078,257 + MPMX20_03870 0.21 +0.4
4,078,291 + MPMX20_03870 0.25 -2.8
4,078,299 - MPMX20_03870 0.26 +0.2
4,078,301 + MPMX20_03870 0.26 -0.9
4,078,301 + MPMX20_03870 0.26 -0.2
4,078,301 + MPMX20_03870 0.26 +0.6
4,078,308 - MPMX20_03870 0.27 -0.9
4,078,309 - MPMX20_03870 0.27 +0.7
4,078,319 + MPMX20_03870 0.28 -3.9
4,078,335 + MPMX20_03870 0.30 -1.2
4,078,416 + MPMX20_03870 0.40 -3.2
4,078,453 - MPMX20_03870 0.44 +0.9
4,078,466 - MPMX20_03870 0.46 -0.6
4,078,466 - MPMX20_03870 0.46 -1.3
4,078,512 + MPMX20_03870 0.51 +1.6
4,078,584 + MPMX20_03870 0.60 +0.9
4,078,584 + MPMX20_03870 0.60 -0.1
4,078,605 - MPMX20_03870 0.62 -1.0
4,078,605 - MPMX20_03870 0.62 +0.4
4,078,635 - MPMX20_03870 0.66 -0.7
4,078,672 + MPMX20_03870 0.70 -2.4
4,078,672 + MPMX20_03870 0.70 -1.6
4,078,704 - MPMX20_03870 0.74 +0.6
4,078,736 + MPMX20_03870 0.78 -2.1
4,078,736 + MPMX20_03870 0.78 -0.1
4,078,756 + MPMX20_03870 0.80 -0.7
4,078,756 + MPMX20_03870 0.80 -2.9
4,078,764 - MPMX20_03870 0.81 -0.4
4,078,924 + +1.4
4,078,929 + -0.1
4,078,932 - +0.2
4,078,945 - -0.5
4,078,948 + +1.9
4,078,948 + -0.9
4,078,948 + -0.9
4,078,987 + -2.0
4,078,987 + -2.0
4,079,016 - -1.5
4,079,035 + MPMX20_03871 0.12 -3.6
4,079,045 + MPMX20_03871 0.13 -1.2
4,079,045 + MPMX20_03871 0.13 +1.9
4,079,053 - MPMX20_03871 0.14 -0.4
4,079,053 - MPMX20_03871 0.14 +2.3
4,079,053 - MPMX20_03871 0.14 -3.7
4,079,053 - MPMX20_03871 0.14 -1.0
4,079,053 - MPMX20_03871 0.14 -2.0
4,079,053 - MPMX20_03871 0.14 -1.3
4,079,063 - MPMX20_03871 0.15 -1.1
4,079,095 + MPMX20_03871 0.19 -0.6
4,079,145 - MPMX20_03871 0.24 +0.4
4,079,181 + MPMX20_03871 0.28 -2.3
4,079,229 + MPMX20_03871 0.34 -0.8
4,079,260 - MPMX20_03871 0.37 -0.3
4,079,260 - MPMX20_03871 0.37 +0.0
4,079,267 - MPMX20_03871 0.38 -1.1
4,079,274 + MPMX20_03871 0.39 -0.7
4,079,291 - MPMX20_03871 0.41 +0.4
4,079,330 - MPMX20_03871 0.45 -0.8
4,079,332 + MPMX20_03871 0.45 +0.4
4,079,340 - MPMX20_03871 0.46 +3.6
4,079,340 - MPMX20_03871 0.46 -1.2
4,079,462 + MPMX20_03871 0.60 -2.1
4,079,506 + MPMX20_03871 0.65 +0.5
4,079,506 + MPMX20_03871 0.65 +0.5
4,079,520 + MPMX20_03871 0.67 -1.4
4,079,575 + MPMX20_03871 0.73 +0.5
4,079,587 + MPMX20_03871 0.74 -0.4
4,079,587 + MPMX20_03871 0.74 -0.8
4,079,620 + MPMX20_03871 0.78 -1.5
4,079,635 + MPMX20_03871 0.80 -0.4
4,079,636 - MPMX20_03871 0.80 +0.2
4,079,727 + -1.6
4,079,735 - +0.4
4,079,786 - -0.6
4,079,822 + -0.6
4,079,864 - -0.5
4,079,874 + -2.7
4,079,882 - +2.9
4,079,882 - -1.5
4,080,056 + MPMX20_03872 0.26 +1.1
4,080,074 + MPMX20_03872 0.27 +0.2
4,080,077 - MPMX20_03872 0.28 -0.1
4,080,082 - MPMX20_03872 0.28 -2.0
4,080,115 - MPMX20_03872 0.32 -3.1
4,080,115 - MPMX20_03872 0.32 -2.1
4,080,147 + MPMX20_03872 0.35 -0.9
4,080,179 + MPMX20_03872 0.38 +0.4
4,080,251 + MPMX20_03872 0.46 -0.5
4,080,259 - MPMX20_03872 0.47 +0.0
4,080,261 + MPMX20_03872 0.47 -1.4
4,080,261 - MPMX20_03872 0.47 -0.1
4,080,264 + MPMX20_03872 0.47 -0.1
4,080,284 - MPMX20_03872 0.49 -2.4
4,080,313 - MPMX20_03872 0.53 -0.9
4,080,313 - MPMX20_03872 0.53 -3.4
4,080,365 - MPMX20_03872 0.58 -0.2
4,080,420 - MPMX20_03872 0.64 -1.1
4,080,425 - MPMX20_03872 0.64 +3.8
4,080,471 + MPMX20_03872 0.69 -1.5
4,080,626 - MPMX20_03872 0.85 -0.6
4,080,671 - +0.4
4,080,676 + -0.6
4,080,702 - -1.1
4,080,720 + +0.9

Or see this region's nucleotide sequence